Wall clock time and date at job start Tue Mar 31 2020 18:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46948 * 2 1 4 4 C 1.52998 * 109.47530 * 120.00300 * 2 1 3 5 5 N 1.46896 * 109.47254 * 175.00316 * 4 2 1 6 6 C 1.46900 * 111.00236 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47403 * 179.97438 * 6 5 4 8 8 O 1.21292 * 119.99915 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00071 * 179.97438 * 7 6 5 10 10 C 1.37093 * 120.00131 * 179.97438 * 9 7 6 11 11 H 1.08009 * 120.00040 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00165 * 180.02562 * 10 9 7 13 13 N 1.31414 * 119.99909 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00067 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47009 * 60.00222 * 14 12 10 16 16 H 1.48497 * 109.46935 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47004 * 299.99956 * 14 12 10 18 18 N 1.46502 * 109.47163 * 240.00330 * 2 1 3 19 19 C 1.34779 * 120.00193 * 84.99404 * 18 2 1 20 20 O 1.21284 * 119.99525 * 0.02562 * 19 18 2 21 21 C 1.50693 * 120.00203 * 180.02562 * 19 18 2 22 22 C 1.52999 * 109.47352 * 180.02562 * 21 19 18 23 23 C 1.50698 * 109.47164 * 179.97438 * 22 21 19 24 24 C 1.38624 * 120.44417 * 124.99635 * 23 22 21 25 25 C 1.38574 * 118.39673 * 179.70022 * 24 23 22 26 26 N 1.32345 * 119.10916 * 0.28037 * 25 24 23 27 27 C 1.31789 * 120.81651 * 359.97438 * 26 25 24 28 28 N 1.31809 * 121.75220 * 0.02562 * 27 26 25 29 29 H 1.08993 * 109.47671 * 59.99601 * 1 2 3 30 30 H 1.09003 * 109.46948 * 179.97438 * 1 2 3 31 31 H 1.09011 * 109.47073 * 299.99719 * 1 2 3 32 32 H 1.09006 * 109.46704 * 295.00151 * 4 2 1 33 33 H 1.08995 * 109.47443 * 54.99577 * 4 2 1 34 34 H 1.00901 * 111.00556 * 56.04035 * 5 4 2 35 35 H 1.09010 * 109.46849 * 299.99941 * 6 5 4 36 36 H 1.09000 * 109.47268 * 59.99347 * 6 5 4 37 37 H 0.96999 * 119.99706 * 0.02562 * 9 7 6 38 38 H 0.97001 * 120.00002 * 179.97438 * 13 12 10 39 39 H 0.96994 * 120.00001 * 265.00098 * 18 2 1 40 40 H 1.09003 * 109.47073 * 59.99726 * 21 19 18 41 41 H 1.09005 * 109.47163 * 300.00108 * 21 19 18 42 42 H 1.08995 * 109.47163 * 59.99700 * 22 21 19 43 43 H 1.08995 * 109.46907 * 299.99945 * 22 21 19 44 44 H 1.08002 * 120.80485 * 359.97438 * 24 23 22 45 45 H 1.08001 * 120.45088 * 180.29937 * 25 24 23 46 46 H 1.08001 * 119.12241 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8266 1.1903 6 6 4.0304 -1.5159 2.3760 7 6 5.5317 -1.6053 2.2799 8 8 6.1067 -1.1402 1.3186 9 7 6.2355 -2.2013 3.2628 10 6 7.6012 -2.2831 3.1752 11 1 8.1132 -1.8697 2.3187 12 6 8.3268 -2.8980 4.1882 13 7 7.7038 -3.4015 5.2300 14 14 10.1877 -3.0089 4.0691 15 1 10.7614 -1.6411 3.9963 16 1 10.7197 -3.7062 5.2674 17 1 10.5613 -3.7680 2.8487 18 7 2.0183 -0.6905 -1.1962 19 6 2.1469 -0.0182 -2.3572 20 8 1.8588 1.1587 -2.4115 21 6 2.6487 -0.7286 -3.5878 22 6 2.7008 0.2547 -4.7588 23 6 3.2032 -0.4557 -5.9893 24 6 2.4618 -0.4414 -7.1605 25 6 2.9669 -1.1032 -8.2683 26 7 4.1297 -1.7274 -8.1706 27 6 4.8048 -1.7241 -7.0387 28 7 4.3555 -1.1054 -5.9650 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.7517 -0.1583 2.1369 33 1 1.6055 -1.7198 1.2951 34 1 3.9280 0.0826 1.0822 35 1 3.7558 -0.9588 3.2718 36 1 3.6096 -2.5200 2.4293 37 1 5.7757 -2.5729 4.0317 38 1 8.2103 -3.8311 5.9370 39 1 2.2490 -1.6317 -1.1527 40 1 1.9759 -1.5505 -3.8326 41 1 3.6479 -1.1211 -3.3987 42 1 3.3738 1.0762 -4.5138 43 1 1.7019 0.6475 -4.9480 44 1 1.5154 0.0767 -7.2098 45 1 2.4191 -1.1093 -9.1991 46 1 5.7512 -2.2420 -6.9896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321861264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:20 Heat of formation + Delta-G solvation = -35.210224 kcal Electronic energy + Delta-G solvation = -27398.353176 eV Core-core repulsion = 23322.665363 eV Total energy + Delta-G solvation = -4075.687813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.31924 -39.85627 -38.31950 -36.78382 -35.21679 -34.28006 -33.64869 -33.07343 -31.76443 -31.22013 -30.53342 -27.61011 -26.15113 -25.00900 -24.65541 -23.31821 -22.65516 -21.17643 -20.31410 -19.24169 -17.95695 -17.88997 -17.46747 -16.77833 -16.56793 -15.89147 -15.79103 -15.59331 -15.22399 -14.98597 -14.58249 -14.55854 -14.05431 -14.03346 -13.97487 -13.56257 -13.42778 -13.33035 -12.81777 -12.59218 -12.45973 -12.37133 -12.01017 -11.79334 -11.54735 -11.52391 -11.47267 -11.14085 -11.02241 -10.95073 -10.82636 -10.44533 -10.21890 -9.97229 -9.79060 -9.51063 -9.50569 -9.03826 -8.49127 -8.11553 -7.96932 -6.42377 -3.83199 0.59235 0.73922 2.66977 3.13929 3.20059 3.25692 3.30295 3.48262 3.74651 3.87956 3.89723 4.04312 4.13662 4.28509 4.55760 4.70469 4.74501 4.81498 4.88525 4.96049 5.06573 5.09997 5.20635 5.22185 5.27304 5.33908 5.43722 5.47059 5.54798 5.58393 5.73816 5.76232 5.81416 5.89298 5.94018 6.03259 6.08273 6.24223 6.51563 6.69699 7.13086 7.54496 7.55675 7.58626 7.79462 8.05294 8.25962 8.60415 9.17219 9.53337 10.04853 10.75226 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.002229 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.389608 B =12555.956341 C =15143.345461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.086 0.914 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.707 5.707 19 C 0.518 3.482 20 O -0.552 6.552 21 C -0.133 4.133 22 C -0.056 4.056 23 C 0.181 3.819 24 C -0.226 4.226 25 C 0.147 3.853 26 N -0.528 5.528 27 C 0.299 3.701 28 N -0.514 5.514 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.351 0.649 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.406 0.594 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.148 0.852 45 H 0.167 0.833 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.189 3.304 -17.657 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.104 0.896 4 C -0.082 4.082 5 N -0.299 5.299 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.466 6.466 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.357 5.357 19 C 0.305 3.695 20 O -0.431 6.431 21 C -0.173 4.173 22 C -0.094 4.094 23 C 0.034 3.966 24 C -0.248 4.248 25 C -0.018 4.018 26 N -0.243 5.243 27 C 0.011 3.989 28 N -0.228 5.228 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.171 0.829 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.241 0.759 40 H 0.107 0.893 41 H 0.128 0.872 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.165 0.835 45 H 0.184 0.816 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -16.051 3.309 -18.487 24.706 hybrid contribution -0.103 0.193 1.231 1.251 sum -16.155 3.502 -17.256 23.896 Atomic orbital electron populations 1.22134 0.95068 1.02160 1.02562 1.20933 0.93504 0.97518 0.84120 0.89601 1.22312 0.89573 1.00665 0.95695 1.60051 1.03000 1.26898 1.39974 1.21677 0.95344 0.99823 0.91353 1.19801 0.88000 0.84651 0.85052 1.90536 1.71089 1.51781 1.33165 1.41855 1.07401 1.50962 1.19803 1.19652 0.81524 1.35200 1.06517 0.87981 1.25263 1.00709 0.96755 0.95225 1.69604 1.36796 1.38551 1.09409 0.85916 0.82109 0.78606 0.77587 1.19907 1.20987 1.19862 1.45832 1.66516 1.14493 1.08898 1.20505 0.77062 0.87192 0.84746 1.90682 1.50933 1.16047 1.85437 1.21539 1.04622 0.98928 0.92248 1.20354 1.02683 0.97304 0.89043 1.21806 0.89125 0.90556 0.95069 1.22817 1.03222 1.03704 0.95096 1.23234 0.90994 0.89296 0.98325 1.68440 1.08153 1.19478 1.28191 1.25072 0.98681 0.92091 0.83073 1.68302 1.13921 1.09168 1.31384 0.91940 0.92364 0.91655 0.93951 0.90493 0.82948 0.93864 0.89622 0.77488 0.91830 0.75878 0.89254 0.87198 0.88302 0.89087 0.83464 0.81582 0.78601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.48 37.16 0.35 -1.05 16 2 C 0.14 1.54 2.81 -67.93 -0.19 1.35 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 4 C 0.05 0.52 5.24 -3.83 -0.02 0.50 16 5 N -0.67 -10.01 5.85 -115.06 -0.67 -10.69 16 6 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 7 C 0.44 10.20 7.82 -10.99 -0.09 10.11 16 8 O -0.58 -15.66 15.78 5.55 0.09 -15.57 16 9 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 10 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 11 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 14 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 N -0.71 -7.65 4.80 -53.81 -0.26 -7.91 16 19 C 0.52 6.16 7.79 -10.99 -0.09 6.07 16 20 O -0.55 -8.23 15.64 5.55 0.09 -8.14 16 21 C -0.13 -1.26 5.57 -27.89 -0.16 -1.42 16 22 C -0.06 -0.51 4.94 -27.88 -0.14 -0.65 16 23 C 0.18 1.69 6.21 -82.24 -0.51 1.18 16 24 C -0.23 -1.63 9.80 -39.32 -0.39 -2.01 16 25 C 0.15 1.08 11.30 -17.21 -0.19 0.89 16 26 N -0.53 -5.09 10.44 -14.58 -0.15 -5.25 16 27 C 0.30 2.91 12.29 -92.15 -1.13 1.78 16 28 N -0.51 -5.60 10.03 -10.79 -0.11 -5.70 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.35 5.81 8.43 -39.29 -0.33 5.48 16 35 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 38 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.41 4.03 8.60 -40.82 -0.35 3.67 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.11 1.17 7.98 -51.93 -0.41 0.76 16 42 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 43 H 0.09 0.72 7.90 -51.93 -0.41 0.31 16 44 H 0.15 0.65 8.01 -52.49 -0.42 0.23 16 45 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.20 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 397.58 15.07 5.99 5.99 Total: -1.00 -34.58 397.58 -9.00 -43.58 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -6.80 Total: 15.95 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: -2.82 Total: 9.59 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: -0.53 Total: -67.45 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.17 Total: -23.71 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.58 -9.00 -43.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321861264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.370 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds