Wall clock time and date at job start Tue Mar 31 2020 18:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46948 * 2 1 4 4 C 1.52998 * 109.47530 * 120.00300 * 2 1 3 5 5 N 1.46896 * 109.47254 * 175.00316 * 4 2 1 6 6 C 1.46900 * 111.00236 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47403 * 179.97438 * 6 5 4 8 8 O 1.21292 * 119.99915 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00071 * 179.97438 * 7 6 5 10 10 C 1.37093 * 120.00131 * 179.97438 * 9 7 6 11 11 H 1.08009 * 120.00040 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00165 * 180.02562 * 10 9 7 13 13 N 1.31414 * 119.99909 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00067 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47009 * 60.00222 * 14 12 10 16 16 H 1.48497 * 109.46935 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47004 * 299.99956 * 14 12 10 18 18 N 1.46502 * 109.47163 * 240.00330 * 2 1 3 19 19 C 1.34779 * 120.00193 * 84.99404 * 18 2 1 20 20 O 1.21284 * 119.99525 * 0.02562 * 19 18 2 21 21 C 1.50693 * 120.00203 * 180.02562 * 19 18 2 22 22 C 1.52999 * 109.47352 * 180.02562 * 21 19 18 23 23 C 1.50698 * 109.47164 * 179.97438 * 22 21 19 24 24 C 1.38624 * 120.44417 * 124.99635 * 23 22 21 25 25 C 1.38574 * 118.39673 * 179.70022 * 24 23 22 26 26 N 1.32345 * 119.10916 * 0.28037 * 25 24 23 27 27 C 1.31789 * 120.81651 * 359.97438 * 26 25 24 28 28 N 1.31809 * 121.75220 * 0.02562 * 27 26 25 29 29 H 1.08993 * 109.47671 * 59.99601 * 1 2 3 30 30 H 1.09003 * 109.46948 * 179.97438 * 1 2 3 31 31 H 1.09011 * 109.47073 * 299.99719 * 1 2 3 32 32 H 1.09006 * 109.46704 * 295.00151 * 4 2 1 33 33 H 1.08995 * 109.47443 * 54.99577 * 4 2 1 34 34 H 1.00901 * 111.00556 * 56.04035 * 5 4 2 35 35 H 1.09010 * 109.46849 * 299.99941 * 6 5 4 36 36 H 1.09000 * 109.47268 * 59.99347 * 6 5 4 37 37 H 0.96999 * 119.99706 * 0.02562 * 9 7 6 38 38 H 0.97001 * 120.00002 * 179.97438 * 13 12 10 39 39 H 0.96994 * 120.00001 * 265.00098 * 18 2 1 40 40 H 1.09003 * 109.47073 * 59.99726 * 21 19 18 41 41 H 1.09005 * 109.47163 * 300.00108 * 21 19 18 42 42 H 1.08995 * 109.47163 * 59.99700 * 22 21 19 43 43 H 1.08995 * 109.46907 * 299.99945 * 22 21 19 44 44 H 1.08002 * 120.80485 * 359.97438 * 24 23 22 45 45 H 1.08001 * 120.45088 * 180.29937 * 25 24 23 46 46 H 1.08001 * 119.12241 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8266 1.1903 6 6 4.0304 -1.5159 2.3760 7 6 5.5317 -1.6053 2.2799 8 8 6.1067 -1.1402 1.3186 9 7 6.2355 -2.2013 3.2628 10 6 7.6012 -2.2831 3.1752 11 1 8.1132 -1.8697 2.3187 12 6 8.3268 -2.8980 4.1882 13 7 7.7038 -3.4015 5.2300 14 14 10.1877 -3.0089 4.0691 15 1 10.7614 -1.6411 3.9963 16 1 10.7197 -3.7062 5.2674 17 1 10.5613 -3.7680 2.8487 18 7 2.0183 -0.6905 -1.1962 19 6 2.1469 -0.0182 -2.3572 20 8 1.8588 1.1587 -2.4115 21 6 2.6487 -0.7286 -3.5878 22 6 2.7008 0.2547 -4.7588 23 6 3.2032 -0.4557 -5.9893 24 6 2.4618 -0.4414 -7.1605 25 6 2.9669 -1.1032 -8.2683 26 7 4.1297 -1.7274 -8.1706 27 6 4.8048 -1.7241 -7.0387 28 7 4.3555 -1.1054 -5.9650 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.7517 -0.1583 2.1369 33 1 1.6055 -1.7198 1.2951 34 1 3.9280 0.0826 1.0822 35 1 3.7558 -0.9588 3.2718 36 1 3.6096 -2.5200 2.4293 37 1 5.7757 -2.5729 4.0317 38 1 8.2103 -3.8311 5.9370 39 1 2.2490 -1.6317 -1.1527 40 1 1.9759 -1.5505 -3.8326 41 1 3.6479 -1.1211 -3.3987 42 1 3.3738 1.0762 -4.5138 43 1 1.7019 0.6475 -4.9480 44 1 1.5154 0.0767 -7.2098 45 1 2.4191 -1.1093 -9.1991 46 1 5.7512 -2.2420 -6.9896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321861264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:19 Heat of formation + Delta-G solvation = -61.583962 kcal Electronic energy + Delta-G solvation = -27399.496827 eV Core-core repulsion = 23322.665363 eV Total energy + Delta-G solvation = -4076.831464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.97597 -40.80464 -40.11024 -37.86137 -36.07777 -35.90187 -35.06689 -33.75872 -33.25595 -32.55760 -31.34176 -28.94679 -26.94501 -26.61555 -25.30425 -24.60971 -23.41372 -22.03960 -21.23398 -21.02300 -19.89943 -18.64408 -18.26007 -18.00490 -17.38920 -17.28310 -16.63428 -16.47654 -16.33601 -16.27736 -15.99103 -15.80708 -15.33424 -15.18033 -14.82872 -14.70869 -14.57212 -14.25897 -14.05021 -13.60419 -13.52352 -13.27618 -13.17026 -13.07078 -12.96958 -12.78252 -12.65351 -12.43084 -12.27733 -12.12889 -11.82100 -11.77317 -11.55136 -11.50073 -10.84388 -10.51361 -10.34759 -10.19420 -10.01045 -9.94683 -9.33877 -8.46552 -5.94972 -0.04611 0.10987 1.39491 1.41443 1.52095 1.72898 2.06690 2.28105 2.30729 2.81652 2.91120 3.08723 3.20909 3.30769 3.50510 3.56078 3.80620 3.87038 4.08607 4.13956 4.20038 4.23170 4.27551 4.34536 4.41174 4.53420 4.59860 4.62986 4.64433 4.67101 4.78009 4.80471 4.83518 4.98398 5.07362 5.09866 5.30446 5.40812 5.46535 5.63525 5.87859 6.06976 6.09716 6.32357 6.60821 6.66959 7.13272 7.13668 7.35138 7.57316 8.13153 8.70454 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.002229 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.389608 B =12555.956341 C =15143.345461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.145 3.855 3 H 0.062 0.938 4 C 0.054 3.946 5 N -0.679 5.679 6 C 0.066 3.934 7 C 0.436 3.564 8 O -0.624 6.624 9 N -0.573 5.573 10 C -0.334 4.334 11 H 0.077 0.923 12 C -0.013 4.013 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.273 1.273 16 H -0.270 1.270 17 H -0.272 1.272 18 N -0.703 5.703 19 C 0.515 3.485 20 O -0.586 6.586 21 C -0.124 4.124 22 C -0.049 4.049 23 C 0.163 3.837 24 C -0.216 4.216 25 C 0.144 3.856 26 N -0.546 5.546 27 C 0.284 3.716 28 N -0.543 5.543 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.339 0.661 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.412 0.588 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.179 0.821 45 H 0.202 0.798 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.964 2.567 -17.807 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 H 0.080 0.920 4 C -0.075 4.075 5 N -0.310 5.310 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.211 5.211 10 C -0.463 4.463 11 H 0.095 0.905 12 C -0.213 4.213 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.198 1.198 16 H -0.194 1.194 17 H -0.198 1.198 18 N -0.353 5.353 19 C 0.302 3.698 20 O -0.468 6.468 21 C -0.164 4.164 22 C -0.088 4.088 23 C 0.018 3.982 24 C -0.237 4.237 25 C -0.021 4.021 26 N -0.260 5.260 27 C -0.003 4.003 28 N -0.258 5.258 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.157 0.843 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.248 0.752 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.124 0.876 44 H 0.196 0.804 45 H 0.218 0.782 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -17.863 2.543 -18.607 25.919 hybrid contribution 0.385 0.453 1.238 1.373 sum -17.478 2.996 -17.369 24.823 Atomic orbital electron populations 1.22043 0.93090 1.03186 1.02621 1.20948 0.94908 0.96201 0.83995 0.92005 1.22386 0.86757 1.02110 0.96283 1.60057 1.05418 1.26202 1.39359 1.21538 0.90225 1.01819 0.92997 1.20968 0.90733 0.82435 0.83511 1.90508 1.72867 1.53021 1.34646 1.41923 1.06792 1.51763 1.20599 1.19597 0.83179 1.36933 1.06608 0.90531 1.26011 1.04791 0.95866 0.94587 1.69659 1.38275 1.38426 1.09646 0.85021 0.76990 0.78566 0.77967 1.19839 1.19414 1.19765 1.45872 1.65939 1.14714 1.08780 1.20886 0.76514 0.86836 0.85539 1.90662 1.52596 1.17490 1.86013 1.21477 1.04101 0.99397 0.91434 1.20279 1.02901 0.96531 0.89043 1.21919 0.89344 0.91022 0.95926 1.23119 1.03859 1.02859 0.93903 1.23869 0.90364 0.88191 0.99689 1.68484 1.09246 1.20254 1.28065 1.25354 0.99416 0.92444 0.83101 1.68268 1.15038 1.10214 1.32263 0.93259 0.90782 0.90237 0.92266 0.88483 0.84298 0.91571 0.87216 0.76924 0.91304 0.75215 0.86944 0.88634 0.90488 0.87610 0.80384 0.78161 0.77419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.48 71.98 0.68 -1.64 16 2 C 0.14 2.92 2.81 44.99 0.13 3.04 16 3 H 0.06 1.57 7.58 -2.39 -0.02 1.55 16 4 C 0.05 1.04 5.24 86.30 0.45 1.49 16 5 N -0.68 -19.58 5.85 -517.93 -3.03 -22.61 16 6 C 0.07 2.11 6.17 85.56 0.53 2.64 16 7 C 0.44 20.34 7.82 87.66 0.69 21.03 16 8 O -0.62 -34.48 15.78 -3.07 -0.05 -34.53 16 9 N -0.57 -29.08 5.29 -306.98 -1.62 -30.70 16 10 C -0.33 -18.95 9.68 84.04 0.81 -18.13 16 11 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 12 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 13 N -0.92 -49.32 13.05 21.66 0.28 -49.03 16 14 Si 0.99 43.08 29.55 68.60 2.03 45.10 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 N -0.70 -14.73 4.80 -442.53 -2.12 -16.86 16 19 C 0.51 12.26 7.79 87.65 0.68 12.94 16 20 O -0.59 -17.81 15.64 -3.04 -0.05 -17.86 16 21 C -0.12 -2.35 5.57 29.85 0.17 -2.19 16 22 C -0.05 -0.90 4.94 29.85 0.15 -0.76 16 23 C 0.16 2.99 6.21 42.58 0.26 3.25 16 24 C -0.22 -2.70 9.80 22.44 0.22 -2.48 16 25 C 0.14 1.85 11.30 84.70 0.96 2.80 16 26 N -0.55 -10.11 10.44 -200.05 -2.09 -12.20 16 27 C 0.28 5.61 12.29 180.88 2.22 7.83 16 28 N -0.54 -12.07 10.03 -188.06 -1.89 -13.96 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.34 11.23 8.43 -89.69 -0.76 10.47 16 35 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 38 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 39 H 0.41 7.69 8.60 -92.71 -0.80 6.89 16 40 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.10 2.12 7.98 -2.38 -0.02 2.11 16 42 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 43 H 0.11 1.58 7.90 -2.39 -0.02 1.56 16 44 H 0.18 1.02 8.01 -2.91 -0.02 1.00 16 45 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 46 H 0.21 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -76.88 397.58 -1.38 -78.26 By element: Atomic # 1 Polarization: 46.02 SS G_CDS: -1.26 Total: 44.76 kcal Atomic # 6 Polarization: 21.21 SS G_CDS: 8.42 Total: 29.62 kcal Atomic # 7 Polarization: -134.90 SS G_CDS: -10.47 Total: -145.36 kcal Atomic # 8 Polarization: -52.30 SS G_CDS: -0.10 Total: -52.39 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -76.88 -1.38 -78.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321861264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.677 kcal (2) G-P(sol) polarization free energy of solvation -76.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds