Wall clock time and date at job start Tue Mar 31 2020 18:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46934 * 2 1 4 4 C 1.52998 * 109.47209 * 120.00086 * 2 1 3 5 5 N 1.46901 * 109.46936 * 175.00205 * 4 2 1 6 6 C 1.46901 * 110.99705 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47246 * 180.02562 * 6 5 4 8 8 O 1.21301 * 119.99939 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00352 * 179.97438 * 7 6 5 10 10 C 1.37104 * 120.00298 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99494 * 359.97438 * 10 9 7 12 12 C 1.38946 * 120.00123 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99943 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00096 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47149 * 90.00109 * 14 12 10 16 16 H 1.48500 * 109.47077 * 210.00548 * 14 12 10 17 17 H 1.48500 * 109.47158 * 330.00277 * 14 12 10 18 18 N 1.46494 * 109.47393 * 240.00601 * 2 1 3 19 19 C 1.34768 * 120.00548 * 84.99437 * 18 2 1 20 20 O 1.21281 * 120.00116 * 0.02562 * 19 18 2 21 21 C 1.50707 * 120.00316 * 180.02562 * 19 18 2 22 22 C 1.53004 * 109.47251 * 180.02562 * 21 19 18 23 23 C 1.50698 * 109.47253 * 179.97438 * 22 21 19 24 24 C 1.38597 * 120.79551 * 89.99434 * 23 22 21 25 25 N 1.32337 * 119.09979 * 179.72102 * 24 23 22 26 26 C 1.31795 * 120.82153 * 0.28399 * 25 24 23 27 27 N 1.31796 * 121.75342 * 0.02562 * 26 25 24 28 28 C 1.32339 * 120.81472 * 359.96878 * 27 26 25 29 29 H 1.08998 * 109.46980 * 299.99790 * 1 2 3 30 30 H 1.08997 * 109.47180 * 59.99760 * 1 2 3 31 31 H 1.08990 * 109.46644 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47251 * 294.99938 * 4 2 1 33 33 H 1.08994 * 109.46994 * 54.99973 * 4 2 1 34 34 H 1.00903 * 111.00313 * 56.05163 * 5 4 2 35 35 H 1.09000 * 109.47361 * 299.99364 * 6 5 4 36 36 H 1.09001 * 109.47589 * 60.00176 * 6 5 4 37 37 H 0.97004 * 120.00124 * 0.02562 * 9 7 6 38 38 H 0.96999 * 119.99950 * 179.97438 * 13 12 10 39 39 H 0.97008 * 119.99978 * 264.99875 * 18 2 1 40 40 H 1.08994 * 109.46796 * 60.00187 * 21 19 18 41 41 H 1.08998 * 109.47011 * 300.00199 * 21 19 18 42 42 H 1.09001 * 109.47020 * 59.99947 * 22 21 19 43 43 H 1.08997 * 109.46897 * 300.00424 * 22 21 19 44 44 H 1.08002 * 120.45366 * 0.02562 * 24 23 22 45 45 H 1.07992 * 119.12500 * 179.97438 * 26 25 24 46 46 H 1.08007 * 120.44447 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5041 -0.8266 1.1903 6 6 4.0303 -1.5159 2.3761 7 6 5.5317 -1.6043 2.2807 8 8 6.1068 -1.1393 1.3192 9 7 6.2355 -2.2000 3.2636 10 6 7.6014 -2.2809 3.1766 11 1 8.1133 -1.8676 2.3202 12 6 8.3269 -2.8955 4.1898 13 7 9.6361 -2.9726 4.1066 14 14 7.4414 -3.6110 5.6708 15 1 7.0913 -5.0286 5.4009 16 1 8.3274 -3.5376 6.8603 17 1 6.2015 -2.8354 5.9285 18 7 2.0184 -0.6904 -1.1962 19 6 2.1471 -0.0181 -2.3571 20 8 1.8590 1.1587 -2.4115 21 6 2.6489 -0.7286 -3.5878 22 6 2.7011 0.2547 -4.7588 23 6 3.2035 -0.4556 -5.9893 24 6 2.3219 -1.0773 -6.8594 25 7 2.7992 -1.6865 -7.9329 26 6 4.0945 -1.7112 -8.1754 27 7 4.9625 -1.1363 -7.3673 28 6 4.5587 -0.5082 -6.2747 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7197 1.2951 34 1 3.9280 0.0827 1.0824 35 1 3.7558 -0.9588 3.2719 36 1 3.6096 -2.5200 2.4294 37 1 5.7756 -2.5722 4.0324 38 1 10.1426 -3.4013 4.8140 39 1 2.2491 -1.6317 -1.1527 40 1 1.9761 -1.5504 -3.8326 41 1 3.6481 -1.1211 -3.3986 42 1 3.3742 1.0763 -4.5137 43 1 1.7021 0.6476 -4.9480 44 1 1.2593 -1.0605 -6.6668 45 1 4.4541 -2.2166 -9.0594 46 1 5.2753 -0.0395 -5.6164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321927145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:33 Heat of formation + Delta-G solvation = -58.108879 kcal Electronic energy + Delta-G solvation = -27439.987620 eV Core-core repulsion = 23363.306847 eV Total energy + Delta-G solvation = -4076.680773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.00396 -40.79323 -40.24613 -37.86544 -36.07938 -35.71416 -35.07560 -34.67465 -33.73457 -32.37874 -30.82681 -29.06871 -26.72985 -26.41341 -25.56104 -24.49392 -23.35405 -21.99445 -21.25502 -21.18919 -20.24644 -18.59370 -18.55788 -18.22221 -17.88221 -17.36856 -16.75208 -16.46793 -16.33387 -15.79358 -15.71768 -15.52561 -15.23200 -14.98581 -14.77711 -14.59162 -14.52848 -14.41511 -14.31507 -14.05214 -13.99927 -13.29081 -13.20461 -13.12354 -12.97859 -12.79091 -12.65215 -12.40718 -12.11761 -11.98074 -11.84646 -11.82969 -11.78449 -11.50471 -10.86761 -10.43684 -10.31623 -10.24280 -10.20495 -9.92769 -9.33796 -8.40921 -6.01991 -0.10773 0.09057 1.30339 1.36365 1.45147 1.76342 1.97468 2.23513 2.33253 2.72925 2.80152 3.15631 3.25734 3.29052 3.40845 3.65550 3.68090 3.84159 3.86018 4.01825 4.13733 4.24565 4.29546 4.34790 4.42600 4.49425 4.55195 4.59575 4.67817 4.70060 4.78522 4.79441 4.85043 5.10711 5.12742 5.14523 5.31700 5.44430 5.52892 5.66021 5.90326 5.97168 6.04009 6.31411 6.60177 6.70186 6.89066 7.08665 7.38946 7.40889 7.98021 8.76805 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010679 B = 0.002187 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.316394 B =12801.744115 C =14956.559656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 H 0.060 0.940 4 C 0.054 3.946 5 N -0.682 5.682 6 C 0.063 3.937 7 C 0.447 3.553 8 O -0.615 6.615 9 N -0.592 5.592 10 C -0.328 4.328 11 H 0.053 0.947 12 C -0.018 4.018 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.256 1.256 16 H -0.277 1.277 17 H -0.229 1.229 18 N -0.703 5.703 19 C 0.512 3.488 20 O -0.588 6.588 21 C -0.130 4.130 22 C -0.047 4.047 23 C -0.178 4.178 24 C 0.148 3.852 25 N -0.536 5.536 26 C 0.276 3.724 27 N -0.542 5.542 28 C 0.138 3.862 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.340 0.660 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.413 0.587 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.194 0.806 45 H 0.216 0.784 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.476 0.929 -11.484 27.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 H 0.079 0.921 4 C -0.075 4.075 5 N -0.314 5.314 6 C -0.069 4.069 7 C 0.235 3.765 8 O -0.499 6.499 9 N -0.233 5.233 10 C -0.457 4.457 11 H 0.072 0.928 12 C -0.216 4.216 13 N -0.577 5.577 14 Si 0.786 3.214 15 H -0.181 1.181 16 H -0.203 1.203 17 H -0.153 1.153 18 N -0.354 5.354 19 C 0.300 3.700 20 O -0.469 6.469 21 C -0.170 4.170 22 C -0.086 4.086 23 C -0.182 4.182 24 C -0.017 4.017 25 N -0.250 5.250 26 C -0.011 4.011 27 N -0.255 5.255 28 C -0.027 4.027 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.157 0.843 35 H 0.094 0.906 36 H 0.138 0.862 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.249 0.751 40 H 0.136 0.864 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.211 0.789 45 H 0.232 0.768 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -23.770 0.957 -13.276 27.243 hybrid contribution 0.451 0.420 2.151 2.238 sum -23.319 1.377 -11.125 25.873 Atomic orbital electron populations 1.22043 0.93265 1.03180 1.02517 1.20942 0.94790 0.96237 0.84192 0.92128 1.22385 0.86576 1.02250 0.96244 1.60062 1.05535 1.26336 1.39418 1.21642 0.89225 1.02584 0.93465 1.21083 0.90914 0.81454 0.83044 1.90557 1.73009 1.51878 1.34501 1.42039 1.06068 1.53996 1.21238 1.18990 0.82048 1.37370 1.07325 0.92838 1.26153 0.96203 0.97360 1.01892 1.69811 1.07560 1.44424 1.35859 0.85343 0.79425 0.79765 0.76827 1.18067 1.20274 1.15262 1.45881 1.65981 1.14741 1.08797 1.20968 0.76596 0.86849 0.85599 1.90677 1.52548 1.17686 1.85982 1.21646 1.04296 0.99705 0.91371 1.20093 1.03249 0.96408 0.88811 1.21693 0.95555 1.01292 0.99683 1.23656 1.02052 0.88476 0.87543 1.68506 1.17181 1.18759 1.20523 1.25458 0.84868 0.92693 0.98052 1.68492 1.41114 1.10399 1.05521 1.23546 0.94902 0.91700 0.92510 0.90329 0.93470 0.90710 0.92107 0.88202 0.84255 0.90634 0.86183 0.77440 0.91192 0.75119 0.86372 0.88405 0.90602 0.89038 0.78922 0.76766 0.80603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.48 71.98 0.68 -1.31 16 2 C 0.14 2.48 2.81 44.99 0.13 2.61 16 3 H 0.06 1.38 7.58 -2.38 -0.02 1.36 16 4 C 0.05 0.85 5.24 86.30 0.45 1.30 16 5 N -0.68 -16.95 5.85 -517.93 -3.03 -19.98 16 6 C 0.06 1.67 6.17 85.56 0.53 2.20 16 7 C 0.45 19.09 7.82 87.66 0.69 19.78 16 8 O -0.62 -32.96 15.78 -3.09 -0.05 -33.01 16 9 N -0.59 -26.82 5.09 -306.98 -1.56 -28.38 16 10 C -0.33 -18.90 10.16 84.04 0.85 -18.05 16 11 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 12 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 13 N -0.94 -56.07 13.96 21.66 0.30 -55.76 16 14 Si 0.97 37.78 27.74 68.60 1.90 39.68 16 15 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 16 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 17 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 18 N -0.70 -12.44 4.80 -442.54 -2.12 -14.57 16 19 C 0.51 10.50 7.79 87.66 0.68 11.19 16 20 O -0.59 -16.44 15.64 -3.03 -0.05 -16.49 16 21 C -0.13 -1.86 5.68 29.85 0.17 -1.69 16 22 C -0.05 -0.67 4.68 29.85 0.14 -0.53 16 23 C -0.18 -2.68 5.17 -19.69 -0.10 -2.78 16 24 C 0.15 2.14 11.01 84.70 0.93 3.07 16 25 N -0.54 -9.67 10.44 -200.05 -2.09 -11.76 16 26 C 0.28 4.95 12.29 180.88 2.22 7.17 16 27 N -0.54 -11.26 10.44 -200.05 -2.09 -13.34 16 28 C 0.14 2.51 11.01 84.70 0.93 3.45 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.34 10.03 8.43 -89.69 -0.76 9.28 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.39 14.41 5.76 -92.71 -0.53 13.87 16 38 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.41 6.18 8.60 -92.70 -0.80 5.38 16 40 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 1.31 8.06 -2.39 -0.02 1.29 16 43 H 0.09 1.24 8.06 -2.39 -0.02 1.23 16 44 H 0.19 1.57 8.06 -2.91 -0.02 1.54 16 45 H 0.22 2.53 8.06 -2.91 -0.02 2.51 16 46 H 0.18 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -84.07 394.93 -1.13 -85.20 By element: Atomic # 1 Polarization: 43.63 SS G_CDS: -1.12 Total: 42.51 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 8.77 Total: 25.90 kcal Atomic # 7 Polarization: -133.21 SS G_CDS: -10.59 Total: -143.80 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -0.10 Total: -49.50 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 1.90 Total: 39.68 kcal Total: -84.07 -1.13 -85.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321927145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.092 kcal (2) G-P(sol) polarization free energy of solvation -84.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds