Wall clock time and date at job start Tue Mar 31 2020 19:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.46949 * 2 1 4 4 C 1.35855 * 126.13737 * 269.96296 * 3 2 1 5 5 N 1.30173 * 109.00658 * 180.02562 * 4 3 2 6 6 C 1.35757 * 108.86466 * 359.97438 * 5 4 3 7 7 C 1.47325 * 126.23717 * 179.97438 * 6 5 4 8 8 O 1.21616 * 120.00324 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99765 * 0.02768 * 7 6 5 10 10 C 1.46497 * 120.00419 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47456 * 175.59252 * 10 9 7 12 12 N 1.46896 * 115.54920 * 279.61119 * 11 10 9 13 13 C 1.46897 * 111.00461 * 294.63168 * 12 11 10 14 14 C 1.50701 * 109.47275 * 179.59809 * 13 12 11 15 15 O 1.21297 * 119.99946 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99930 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99822 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99782 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99567 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00028 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99522 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47210 * 59.99808 * 21 19 17 23 23 H 1.48509 * 109.46940 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47495 * 299.99587 * 21 19 17 25 25 C 1.53010 * 117.50014 * 133.94551 * 11 10 9 26 26 C 1.53001 * 117.49751 * 65.28582 * 11 10 9 27 27 C 1.35384 * 126.13593 * 89.99960 * 3 2 1 28 28 H 1.08998 * 109.47161 * 299.99502 * 1 2 3 29 29 H 1.08994 * 109.47369 * 60.00278 * 1 2 3 30 30 H 1.09003 * 109.46838 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47161 * 240.00498 * 2 1 3 32 32 H 1.08994 * 109.47369 * 119.99722 * 2 1 3 33 33 H 1.08004 * 125.49397 * 0.02562 * 4 3 2 34 34 H 0.97003 * 120.00147 * 0.02562 * 9 7 6 35 35 H 1.09010 * 109.46825 * 295.59322 * 10 9 7 36 36 H 1.08994 * 109.47184 * 55.58509 * 10 9 7 37 37 H 1.00907 * 111.00226 * 170.67035 * 12 11 10 38 38 H 1.08998 * 109.46662 * 299.59305 * 13 12 11 39 39 H 1.08992 * 109.47231 * 59.59486 * 13 12 11 40 40 H 0.96999 * 120.00223 * 359.97438 * 16 14 13 41 41 H 0.97006 * 119.99430 * 180.02562 * 20 19 17 42 42 H 1.08998 * 117.49647 * 359.97438 * 25 11 10 43 43 H 1.08994 * 117.49786 * 145.02156 * 25 11 10 44 44 H 1.09001 * 117.49824 * 214.97594 * 26 11 10 45 45 H 1.08992 * 117.50491 * 359.97438 * 26 11 10 46 46 H 1.07995 * 126.56448 * 0.22665 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2859 2.1363 -1.0972 5 7 2.7008 3.3091 -0.7137 6 6 2.7135 3.3482 0.6432 7 6 3.1186 4.4927 1.4777 8 8 3.0862 4.4029 2.6901 9 7 3.5251 5.6393 0.8975 10 6 3.9274 6.7776 1.7272 11 6 4.4447 7.9045 0.8309 12 7 5.8300 7.7579 0.3649 13 6 6.7737 7.8266 1.4885 14 6 8.1806 7.6629 0.9738 15 8 8.3777 7.5041 -0.2124 16 7 9.2196 7.6920 1.8317 17 6 10.4996 7.5435 1.3634 18 1 10.6751 7.4029 0.3071 19 6 11.5708 7.5740 2.2478 20 7 11.3571 7.7456 3.5330 21 14 13.3147 7.3711 1.6098 22 1 13.6172 8.4562 0.6422 23 1 14.2687 7.4412 2.7457 24 1 13.4447 6.0550 0.9342 25 6 3.9412 9.3211 1.1152 26 6 3.4454 8.5657 -0.1204 27 6 2.2843 2.1339 1.0934 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.1727 1.8153 -2.1222 34 1 3.5505 5.7110 -0.0695 35 1 3.0692 7.1324 2.2981 36 1 4.7161 6.4671 2.4123 37 1 6.0510 8.4497 -0.3358 38 1 6.6784 8.7926 1.9844 39 1 6.5516 7.0302 2.1987 40 1 9.0620 7.8186 2.7804 41 1 12.1051 7.7672 4.1503 42 1 3.2410 9.4501 1.9406 43 1 4.6377 10.1442 0.9560 44 1 3.8160 8.8923 -1.0921 45 1 2.4195 8.1977 -0.1081 46 1 2.1805 1.8300 2.1245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323592037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:59 Heat of formation + Delta-G solvation = 17.188221 kcal Electronic energy + Delta-G solvation = -27893.415601 eV Core-core repulsion = 23819.999956 eV Total energy + Delta-G solvation = -4073.415646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.40037 -39.57218 -38.52291 -37.64945 -35.38472 -34.08541 -33.85837 -32.51847 -31.13054 -30.75038 -29.99368 -27.26346 -26.46414 -24.36239 -24.01357 -23.08918 -22.38211 -21.18212 -20.05777 -19.63024 -19.16673 -18.04705 -17.83167 -16.58324 -16.30409 -15.97711 -15.83486 -15.35789 -15.23952 -14.82855 -14.61608 -14.42458 -14.21246 -14.06743 -14.01337 -13.88141 -13.45261 -13.17206 -13.13844 -12.71725 -12.50305 -12.40085 -12.08250 -11.96751 -11.62931 -11.54848 -11.41934 -11.03500 -10.76685 -10.48300 -10.40707 -10.23298 -10.15186 -10.05183 -9.91640 -9.45355 -9.00168 -8.70568 -8.37047 -7.99019 -7.90593 -6.36735 -3.77480 1.45793 2.27339 2.29921 3.20244 3.23659 3.28846 3.33494 3.59577 3.79221 3.95649 4.07925 4.13639 4.26917 4.32287 4.35168 4.44078 4.59991 4.63029 4.75608 4.89782 4.98048 5.04104 5.05353 5.18613 5.29823 5.30578 5.44403 5.57679 5.64185 5.67241 5.79438 5.81251 5.85932 5.93411 6.05172 6.08704 6.23661 6.32593 6.56817 6.75262 7.22549 7.49245 7.59592 7.64719 7.82026 8.10812 8.37850 8.66293 9.22443 9.59360 10.10910 10.80932 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011633 B = 0.002328 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.425898 B =12022.673509 C =13447.979455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.458 5.458 4 C 0.184 3.816 5 N -0.459 5.459 6 C -0.059 4.059 7 C 0.602 3.398 8 O -0.552 6.552 9 N -0.701 5.701 10 C 0.167 3.833 11 C 0.039 3.961 12 N -0.626 5.626 13 C 0.050 3.950 14 C 0.442 3.558 15 O -0.584 6.584 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.207 4.207 26 C -0.165 4.165 27 C 0.033 3.967 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.210 0.790 34 H 0.413 0.587 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.354 0.646 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.393 0.607 41 H 0.272 0.728 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.686 -11.215 -5.006 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.141 5.141 4 C -0.099 4.099 5 N -0.178 5.178 6 C -0.188 4.188 7 C 0.388 3.612 8 O -0.431 6.431 9 N -0.351 5.351 10 C 0.043 3.957 11 C -0.054 4.054 12 N -0.257 5.257 13 C -0.082 4.082 14 C 0.227 3.773 15 O -0.468 6.468 16 N -0.199 5.199 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.247 4.247 26 C -0.203 4.203 27 C -0.106 4.106 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.226 0.774 34 H 0.249 0.751 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.174 0.826 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.226 0.774 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -24.203 -11.519 -5.306 27.325 hybrid contribution 0.625 0.250 0.527 0.856 sum -23.578 -11.269 -4.778 26.566 Atomic orbital electron populations 1.22179 0.93799 1.03414 1.03484 1.21959 0.95820 0.79397 1.05210 1.45542 1.48569 1.13115 1.06861 1.25172 1.03599 0.87542 0.93606 1.70634 1.17387 1.19382 1.10375 1.20566 1.12068 0.95613 0.90540 1.16877 0.76750 0.81285 0.86287 1.90788 1.55882 1.82954 1.13443 1.45628 1.65785 1.12338 1.11368 1.20720 0.99221 0.83977 0.91760 1.21846 0.90238 0.92174 1.01179 1.59831 0.97822 1.55918 1.12097 1.21681 0.92005 1.00967 0.93518 1.19780 0.85695 0.84596 0.87233 1.90524 1.85262 1.54800 1.16211 1.41843 1.05506 1.63269 1.09331 1.19649 0.81448 1.46518 0.95252 0.87997 1.25266 1.00320 0.97387 0.95028 1.69611 1.32892 1.49926 1.01833 0.85915 0.81234 0.79084 0.77948 1.19945 1.20999 1.19907 1.23651 1.04749 0.96168 1.00174 1.23145 0.98910 1.03044 0.95163 1.22572 1.03011 0.91813 0.93220 0.91654 0.91611 0.90312 0.88367 0.88646 0.77355 0.75082 0.91082 0.90289 0.82580 0.93484 0.89430 0.77420 0.91843 0.88437 0.88446 0.88172 0.88135 0.79654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.48 10.24 37.15 0.38 -0.10 16 2 C 0.10 0.33 6.84 -4.05 -0.03 0.31 16 3 N -0.46 -3.47 2.73 -118.36 -0.32 -3.79 16 4 C 0.18 1.61 12.55 -89.90 -1.13 0.48 16 5 N -0.46 -5.78 11.01 -11.03 -0.12 -5.91 16 6 C -0.06 -0.79 6.98 -83.09 -0.58 -1.37 16 7 C 0.60 9.35 7.81 -12.56 -0.10 9.25 16 8 O -0.55 -9.87 16.88 5.26 0.09 -9.78 16 9 N -0.70 -10.04 5.51 -61.42 -0.34 -10.38 16 10 C 0.17 2.31 5.68 -4.05 -0.02 2.29 16 11 C 0.04 0.51 1.81 -131.60 -0.24 0.27 16 12 N -0.63 -10.51 6.29 -101.22 -0.64 -11.15 16 13 C 0.05 0.94 6.01 -4.98 -0.03 0.91 16 14 C 0.44 10.81 7.82 -10.99 -0.09 10.72 16 15 O -0.58 -16.29 15.79 5.54 0.09 -16.20 16 16 N -0.56 -14.75 5.29 -10.96 -0.06 -14.81 16 17 C -0.30 -8.57 9.68 -14.93 -0.14 -8.71 16 18 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -25.11 13.05 55.50 0.72 -24.39 16 21 Si 0.93 21.56 29.55 -169.99 -5.02 16.53 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.21 -2.28 10.07 -26.69 -0.27 -2.55 16 26 C -0.16 -1.78 9.89 -26.69 -0.26 -2.04 16 27 C 0.03 0.34 11.26 -16.64 -0.19 0.15 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.21 0.99 8.06 -52.48 -0.42 0.56 16 34 H 0.41 5.79 8.12 -40.82 -0.33 5.46 16 35 H 0.07 0.89 7.95 -51.92 -0.41 0.48 16 36 H 0.08 1.24 6.52 -51.93 -0.34 0.90 16 37 H 0.35 6.03 8.32 -39.29 -0.33 5.70 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.59 6.62 -51.93 -0.34 1.25 16 40 H 0.39 9.87 7.90 -40.82 -0.32 9.55 16 41 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 43 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -36.28 397.91 -9.05 -45.33 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -6.66 Total: 18.44 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -2.79 Total: 10.11 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -0.75 Total: -70.43 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: 0.18 Total: -25.98 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.28 -9.05 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323592037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.520 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds