Wall clock time and date at job start Tue Mar 31 2020 19:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.46949 * 2 1 4 4 C 1.35855 * 126.13737 * 269.96296 * 3 2 1 5 5 N 1.30173 * 109.00658 * 180.02562 * 4 3 2 6 6 C 1.35757 * 108.86466 * 359.97438 * 5 4 3 7 7 C 1.47325 * 126.23717 * 179.97438 * 6 5 4 8 8 O 1.21616 * 120.00324 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99765 * 0.02768 * 7 6 5 10 10 C 1.46497 * 120.00419 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47456 * 175.59252 * 10 9 7 12 12 N 1.46896 * 115.54920 * 279.61119 * 11 10 9 13 13 C 1.46897 * 111.00461 * 294.63168 * 12 11 10 14 14 C 1.50701 * 109.47275 * 179.59809 * 13 12 11 15 15 O 1.21297 * 119.99946 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99930 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99822 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99782 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99567 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00028 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99522 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47210 * 59.99808 * 21 19 17 23 23 H 1.48509 * 109.46940 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47495 * 299.99587 * 21 19 17 25 25 C 1.53010 * 117.50014 * 133.94551 * 11 10 9 26 26 C 1.53001 * 117.49751 * 65.28582 * 11 10 9 27 27 C 1.35384 * 126.13593 * 89.99960 * 3 2 1 28 28 H 1.08998 * 109.47161 * 299.99502 * 1 2 3 29 29 H 1.08994 * 109.47369 * 60.00278 * 1 2 3 30 30 H 1.09003 * 109.46838 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47161 * 240.00498 * 2 1 3 32 32 H 1.08994 * 109.47369 * 119.99722 * 2 1 3 33 33 H 1.08004 * 125.49397 * 0.02562 * 4 3 2 34 34 H 0.97003 * 120.00147 * 0.02562 * 9 7 6 35 35 H 1.09010 * 109.46825 * 295.59322 * 10 9 7 36 36 H 1.08994 * 109.47184 * 55.58509 * 10 9 7 37 37 H 1.00907 * 111.00226 * 170.67035 * 12 11 10 38 38 H 1.08998 * 109.46662 * 299.59305 * 13 12 11 39 39 H 1.08992 * 109.47231 * 59.59486 * 13 12 11 40 40 H 0.96999 * 120.00223 * 359.97438 * 16 14 13 41 41 H 0.97006 * 119.99430 * 180.02562 * 20 19 17 42 42 H 1.08998 * 117.49647 * 359.97438 * 25 11 10 43 43 H 1.08994 * 117.49786 * 145.02156 * 25 11 10 44 44 H 1.09001 * 117.49824 * 214.97594 * 26 11 10 45 45 H 1.08992 * 117.50491 * 359.97438 * 26 11 10 46 46 H 1.07995 * 126.56448 * 0.22665 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2859 2.1363 -1.0972 5 7 2.7008 3.3091 -0.7137 6 6 2.7135 3.3482 0.6432 7 6 3.1186 4.4927 1.4777 8 8 3.0862 4.4029 2.6901 9 7 3.5251 5.6393 0.8975 10 6 3.9274 6.7776 1.7272 11 6 4.4447 7.9045 0.8309 12 7 5.8300 7.7579 0.3649 13 6 6.7737 7.8266 1.4885 14 6 8.1806 7.6629 0.9738 15 8 8.3777 7.5041 -0.2124 16 7 9.2196 7.6920 1.8317 17 6 10.4996 7.5435 1.3634 18 1 10.6751 7.4029 0.3071 19 6 11.5708 7.5740 2.2478 20 7 11.3571 7.7456 3.5330 21 14 13.3147 7.3711 1.6098 22 1 13.6172 8.4562 0.6422 23 1 14.2687 7.4412 2.7457 24 1 13.4447 6.0550 0.9342 25 6 3.9412 9.3211 1.1152 26 6 3.4454 8.5657 -0.1204 27 6 2.2843 2.1339 1.0934 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.1727 1.8153 -2.1222 34 1 3.5505 5.7110 -0.0695 35 1 3.0692 7.1324 2.2981 36 1 4.7161 6.4671 2.4123 37 1 6.0510 8.4497 -0.3358 38 1 6.6784 8.7926 1.9844 39 1 6.5516 7.0302 2.1987 40 1 9.0620 7.8186 2.7804 41 1 12.1051 7.7672 4.1503 42 1 3.2410 9.4501 1.9406 43 1 4.6377 10.1442 0.9560 44 1 3.8160 8.8923 -1.0921 45 1 2.4195 8.1977 -0.1081 46 1 2.1805 1.8300 2.1245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323592037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:58 Heat of formation + Delta-G solvation = -10.244112 kcal Electronic energy + Delta-G solvation = -27894.605157 eV Core-core repulsion = 23819.999956 eV Total energy + Delta-G solvation = -4074.605201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.13388 -40.75972 -40.10253 -39.10557 -36.03652 -35.93134 -35.11832 -33.93173 -33.21020 -31.27466 -30.81022 -28.37105 -28.12093 -25.88789 -24.85098 -23.93941 -23.28563 -21.81746 -21.21177 -21.03706 -20.63300 -19.92322 -18.84292 -17.96004 -17.24979 -17.11889 -16.99298 -16.68651 -16.39918 -16.21906 -15.83859 -15.65267 -15.44454 -15.31355 -14.93565 -14.66753 -14.61985 -14.50283 -14.15244 -13.84811 -13.60213 -13.52282 -13.36869 -12.97450 -12.93969 -12.86086 -12.44848 -12.41123 -12.20424 -12.13185 -11.90433 -11.51685 -11.39431 -11.18541 -11.01830 -10.74037 -10.34571 -10.11212 -10.03715 -9.57387 -9.26355 -8.47586 -5.96961 0.58276 1.38881 1.40290 1.47137 1.51961 1.70988 2.01954 2.20738 2.28264 2.56510 2.68718 3.03809 3.19115 3.41935 3.46786 3.60965 3.75468 3.80155 3.91127 4.00606 4.11859 4.19110 4.26654 4.42574 4.43230 4.44725 4.51320 4.58908 4.67421 4.74284 4.75897 4.79173 4.86013 4.99402 5.13529 5.21271 5.24580 5.39047 5.44828 5.45982 5.84917 6.05595 6.13790 6.34358 6.53304 6.57599 6.89809 7.10147 7.25527 7.53163 8.08095 8.69638 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011633 B = 0.002328 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.425898 B =12022.673509 C =13447.979455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 N -0.449 5.449 4 C 0.194 3.806 5 N -0.498 5.498 6 C -0.100 4.100 7 C 0.594 3.406 8 O -0.588 6.588 9 N -0.697 5.697 10 C 0.170 3.830 11 C 0.020 3.980 12 N -0.639 5.639 13 C 0.068 3.932 14 C 0.438 3.562 15 O -0.621 6.621 16 N -0.572 5.572 17 C -0.335 4.335 18 H 0.080 0.920 19 C -0.015 4.015 20 N -0.920 5.920 21 Si 0.996 3.004 22 H -0.270 1.270 23 H -0.269 1.269 24 H -0.273 1.273 25 C -0.191 4.191 26 C -0.147 4.147 27 C 0.040 3.960 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.249 0.751 34 H 0.414 0.586 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.351 0.649 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.115 0.885 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.115 0.885 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.827 -12.107 -5.657 29.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.130 5.130 4 C -0.090 4.090 5 N -0.216 5.216 6 C -0.228 4.228 7 C 0.382 3.618 8 O -0.469 6.469 9 N -0.347 5.347 10 C 0.046 3.954 11 C -0.073 4.073 12 N -0.271 5.271 13 C -0.064 4.064 14 C 0.225 3.775 15 O -0.508 6.508 16 N -0.209 5.209 17 C -0.465 4.465 18 H 0.098 0.902 19 C -0.215 4.215 20 N -0.561 5.561 21 Si 0.819 3.181 22 H -0.195 1.195 23 H -0.194 1.194 24 H -0.198 1.198 25 C -0.231 4.231 26 C -0.185 4.185 27 C -0.101 4.101 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.142 0.858 32 H 0.124 0.876 33 H 0.265 0.735 34 H 0.250 0.750 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.171 0.829 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.229 0.771 41 H 0.088 0.912 42 H 0.133 0.867 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.134 0.866 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -25.380 -12.415 -5.954 28.874 hybrid contribution 0.881 0.444 0.680 1.199 sum -24.499 -11.971 -5.273 27.772 Atomic orbital electron populations 1.22153 0.93208 1.04456 1.02595 1.22344 0.96211 0.77140 1.07103 1.45807 1.47267 1.14274 1.05648 1.25931 1.01321 0.86540 0.95216 1.70552 1.19339 1.21745 1.10012 1.20470 1.14984 0.96119 0.91207 1.17297 0.76235 0.82033 0.86216 1.90743 1.57675 1.83674 1.14819 1.45659 1.65286 1.12368 1.11362 1.20707 0.98979 0.84106 0.91654 1.21773 0.88730 0.93409 1.03363 1.59763 0.99282 1.56440 1.11583 1.21457 0.88640 1.02237 0.94062 1.20779 0.87522 0.82566 0.86583 1.90486 1.86325 1.56055 1.17928 1.41922 1.05468 1.63839 1.09663 1.19646 0.83183 1.48965 0.94691 0.90235 1.26102 1.03908 0.96276 0.95172 1.69680 1.34299 1.49522 1.02571 0.84955 0.76382 0.78944 0.77834 1.19462 1.19381 1.19792 1.23697 1.04398 0.94214 1.00791 1.23230 0.98756 1.01369 0.95127 1.22753 1.01640 0.91275 0.94441 0.93123 0.91899 0.88291 0.85759 0.87564 0.73535 0.74987 0.89644 0.92685 0.82872 0.91184 0.89038 0.77052 0.91245 0.86678 0.88381 0.87782 0.86637 0.78618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 10.24 71.98 0.74 0.19 16 2 C 0.09 0.37 6.84 86.38 0.59 0.96 16 3 N -0.45 -6.01 2.73 -528.39 -1.44 -7.45 16 4 C 0.19 3.05 12.55 180.10 2.26 5.31 16 5 N -0.50 -12.40 11.01 -188.80 -2.08 -14.48 16 6 C -0.10 -2.74 6.98 40.51 0.28 -2.46 16 7 C 0.59 19.17 7.81 86.63 0.68 19.85 16 8 O -0.59 -21.91 16.88 -4.08 -0.07 -21.97 16 9 N -0.70 -20.47 5.51 -466.48 -2.57 -23.05 16 10 C 0.17 4.71 5.68 86.38 0.49 5.20 16 11 C 0.02 0.50 1.81 3.53 0.01 0.51 16 12 N -0.64 -21.54 6.29 -474.17 -2.98 -24.52 16 13 C 0.07 2.55 6.01 85.56 0.51 3.07 16 14 C 0.44 22.02 7.82 87.66 0.69 22.70 16 15 O -0.62 -35.80 15.79 -3.08 -0.05 -35.84 16 16 N -0.57 -30.81 5.29 -306.98 -1.62 -32.43 16 17 C -0.34 -19.72 9.68 84.04 0.81 -18.91 16 18 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 19 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 20 N -0.92 -51.23 13.05 21.66 0.28 -50.94 16 21 Si 1.00 44.11 29.55 68.60 2.03 46.14 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 C -0.19 -3.81 10.07 30.62 0.31 -3.50 16 26 C -0.15 -2.90 9.89 30.62 0.30 -2.60 16 27 C 0.04 0.82 11.26 83.72 0.94 1.77 16 28 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.25 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.41 11.86 8.12 -92.71 -0.75 11.11 16 35 H 0.09 2.11 7.95 -2.38 -0.02 2.09 16 36 H 0.05 1.79 6.52 -2.39 -0.02 1.77 16 37 H 0.35 12.00 8.32 -89.69 -0.75 11.25 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.09 3.39 6.62 -2.39 -0.02 3.37 16 40 H 0.40 20.39 7.90 -92.71 -0.73 19.66 16 41 H 0.28 14.49 8.31 -92.70 -0.77 13.72 16 42 H 0.11 1.93 8.08 -2.39 -0.02 1.91 16 43 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.20 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -81.39 397.91 -0.62 -82.01 By element: Atomic # 1 Polarization: 52.00 SS G_CDS: -1.19 Total: 50.80 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: 9.08 Total: 31.75 kcal Atomic # 7 Polarization: -142.47 SS G_CDS: -10.41 Total: -152.88 kcal Atomic # 8 Polarization: -57.70 SS G_CDS: -0.12 Total: -57.82 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -81.39 -0.62 -82.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323592037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.763 kcal (2) G-P(sol) polarization free energy of solvation -81.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds