Wall clock time and date at job start Tue Mar 31 2020 18:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47259 * 2 1 4 4 C 1.53009 * 109.46995 * 119.99839 * 2 1 3 5 5 N 1.46492 * 109.47132 * 184.99891 * 4 2 1 6 6 C 1.34426 * 126.82291 * 124.70763 * 5 4 2 7 7 N 1.30830 * 108.07905 * 179.89181 * 6 5 4 8 8 C 1.33245 * 109.82805 * 0.38858 * 7 6 5 9 9 N 1.30709 * 108.94720 * 359.75723 * 8 7 6 10 10 N 1.46501 * 109.47348 * 239.99584 * 2 1 3 11 11 C 1.34777 * 119.99564 * 85.00044 * 10 2 1 12 12 O 1.21347 * 120.00220 * 0.02562 * 11 10 2 13 13 C 1.49457 * 119.99505 * 180.02562 * 11 10 2 14 14 O 1.21342 * 120.00380 * 353.24171 * 13 11 10 15 15 N 1.34782 * 119.99484 * 173.23616 * 13 11 10 16 16 C 1.46923 * 120.62684 * 171.44241 * 15 13 11 17 17 C 1.53197 * 108.89116 * 126.46037 * 16 15 13 18 18 C 1.53040 * 109.31091 * 54.56637 * 17 16 15 19 19 C 1.50700 * 109.46331 * 178.62515 * 18 17 16 20 20 H 1.08000 * 119.99425 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00362 * 179.97438 * 19 18 17 22 22 N 1.31523 * 119.99766 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00163 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47455 * 60.00184 * 23 21 19 25 25 H 1.48504 * 109.47140 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47298 * 300.00278 * 23 21 19 27 27 C 1.53045 * 109.53845 * 298.63723 * 18 17 16 28 28 C 1.46960 * 120.65505 * 351.26403 * 15 13 11 29 29 H 1.09004 * 109.47190 * 60.00220 * 1 2 3 30 30 H 1.08995 * 109.47259 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47540 * 300.00489 * 1 2 3 32 32 H 1.09000 * 109.46810 * 304.99983 * 4 2 1 33 33 H 1.08997 * 109.46804 * 64.99475 * 4 2 1 34 34 H 1.08003 * 125.96280 * 0.04641 * 6 5 4 35 35 H 1.07999 * 125.52834 * 179.72965 * 8 7 6 36 36 H 0.96993 * 120.00049 * 265.00427 * 10 2 1 37 37 H 1.09007 * 109.59032 * 6.60837 * 16 15 13 38 38 H 1.08996 * 109.59077 * 246.31988 * 16 15 13 39 39 H 1.08998 * 109.49713 * 174.51284 * 17 16 15 40 40 H 1.08994 * 109.49757 * 294.58305 * 17 16 15 41 41 H 1.09008 * 109.46079 * 58.65092 * 18 17 16 42 42 H 0.96996 * 119.99667 * 180.02562 * 22 21 19 43 43 H 1.08996 * 109.49836 * 181.31973 * 27 18 17 44 44 H 1.09004 * 109.49264 * 301.40758 * 27 18 17 45 45 H 1.08999 * 109.46492 * 113.75401 * 28 15 13 46 46 H 1.09003 * 109.71205 * 353.46093 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4999 -0.6179 1.3111 6 6 4.2309 -0.1324 2.3294 7 7 5.4939 -0.2146 1.9979 8 6 5.6078 -0.7373 0.7776 9 7 4.4138 -1.0007 0.3156 10 7 2.0184 -0.6907 -1.1961 11 6 2.1471 -0.0183 -2.3571 12 8 1.8589 1.1592 -2.4115 13 6 2.6448 -0.7231 -3.5775 14 8 3.0485 -1.8645 -3.4967 15 7 2.6450 -0.0908 -4.7677 16 6 3.2994 -0.6950 -5.9362 17 6 2.2959 -0.7523 -7.0923 18 6 1.7315 0.6480 -7.3424 19 6 0.7691 0.6019 -8.5011 20 1 0.5787 -0.3325 -9.0080 21 6 0.1308 1.7524 -8.9135 22 7 0.3624 2.8903 -8.2958 23 14 -1.0626 1.6951 -10.3492 24 1 -2.1739 0.7624 -10.0324 25 1 -1.6103 3.0538 -10.5923 26 1 -0.3522 1.2235 -11.5650 27 6 0.9988 1.1357 -6.0904 28 6 1.9876 1.2144 -4.9230 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6053 -0.2617 2.1370 33 1 1.7515 -1.7715 1.2057 34 1 3.8434 0.2555 3.2599 35 1 6.5361 -0.9140 0.2547 36 1 2.2490 -1.6318 -1.1525 37 1 3.6299 -1.7040 -5.6889 38 1 4.1582 -0.0904 -6.2275 39 1 2.7975 -1.1085 -7.9921 40 1 1.4834 -1.4320 -6.8354 41 1 2.5476 1.3322 -7.5752 42 1 -0.0869 3.6995 -8.5857 43 1 0.5771 2.1233 -6.2772 44 1 0.1981 0.4387 -5.8428 45 1 2.7383 1.9768 -5.1307 46 1 1.4528 1.4678 -4.0076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327984199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:06 Heat of formation + Delta-G solvation = 35.061490 kcal Electronic energy + Delta-G solvation = -29493.133553 eV Core-core repulsion = 25420.492950 eV Total energy + Delta-G solvation = -4072.640603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.32863 -40.65363 -38.71376 -37.01203 -36.63960 -33.77289 -33.28838 -31.52334 -31.20106 -31.07907 -30.03133 -27.20287 -26.62996 -24.80536 -22.96590 -22.40705 -22.27515 -22.00352 -21.15052 -20.23656 -18.92258 -17.78582 -17.19982 -17.08352 -16.43918 -16.05232 -15.65477 -15.52104 -15.37272 -14.67973 -14.53513 -14.46801 -14.06813 -13.78116 -13.64712 -13.31945 -13.16937 -12.96618 -12.83161 -12.63758 -12.50124 -12.28937 -12.04874 -11.68884 -11.67096 -11.34355 -10.93267 -10.83535 -10.62469 -10.35655 -10.27278 -10.07359 -10.06257 -10.01093 -9.68237 -9.33054 -9.20493 -9.15727 -8.59284 -8.33278 -8.03876 -5.99717 -4.06331 1.35065 1.68054 1.94535 2.50961 2.72936 3.31071 3.35918 3.38559 3.46749 3.69355 3.89311 4.02641 4.23495 4.42749 4.49923 4.57057 4.62680 4.82770 4.96263 5.00102 5.24465 5.29793 5.50564 5.67319 5.81514 5.87312 5.92281 5.95419 6.09881 6.14159 6.16749 6.27114 6.45837 6.46979 6.61860 6.72516 6.81604 7.00507 7.14355 7.18319 7.32487 7.68159 7.80313 7.81182 7.92607 7.97186 8.08941 8.31589 8.43047 8.96750 9.58333 11.05653 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022282 B = 0.002596 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.334500 B =10783.425213 C =11355.864871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 H 0.097 0.903 4 C 0.120 3.880 5 N -0.383 5.383 6 C 0.251 3.749 7 N -0.547 5.547 8 C 0.197 3.803 9 N -0.300 5.300 10 N -0.690 5.690 11 C 0.516 3.484 12 O -0.510 6.510 13 C 0.501 3.499 14 O -0.540 6.540 15 N -0.564 5.564 16 C 0.108 3.892 17 C -0.122 4.122 18 C 0.046 3.954 19 C -0.513 4.513 20 H 0.054 0.946 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.891 3.109 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.122 4.122 28 C 0.068 3.932 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.218 0.782 35 H 0.216 0.784 36 H 0.414 0.586 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.028 0.972 42 H 0.261 0.739 43 H 0.105 0.895 44 H 0.035 0.965 45 H 0.060 0.940 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.852 -5.880 23.013 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.026 3.974 3 H 0.115 0.885 4 C -0.002 4.002 5 N -0.175 5.175 6 C -0.046 4.046 7 N -0.274 5.274 8 C -0.106 4.106 9 N -0.127 5.127 10 N -0.344 5.344 11 C 0.299 3.701 12 O -0.386 6.386 13 C 0.283 3.717 14 O -0.418 6.418 15 N -0.295 5.295 16 C -0.014 4.014 17 C -0.160 4.160 18 C 0.028 3.972 19 C -0.551 4.551 20 H 0.072 0.928 21 C -0.140 4.140 22 N -0.529 5.529 23 Si 0.719 3.281 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.161 4.161 28 C -0.053 4.053 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.116 0.884 34 H 0.234 0.766 35 H 0.232 0.768 36 H 0.251 0.749 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.123 0.877 44 H 0.054 0.946 45 H 0.078 0.922 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.867 -5.648 22.480 23.355 hybrid contribution -0.732 -0.242 -0.691 1.035 sum 2.136 -5.889 21.789 22.671 Atomic orbital electron populations 1.22174 0.93142 1.03140 1.03901 1.21261 0.95042 0.97986 0.83151 0.88474 1.22258 0.74329 1.03546 1.00106 1.50581 1.07623 1.46585 1.12666 1.26081 0.87321 0.96171 0.95039 1.70543 1.17974 1.23557 1.15300 1.26062 0.96967 0.96745 0.90852 1.78210 0.99550 1.23357 1.11586 1.45653 1.65614 1.14921 1.08179 1.20343 0.77986 0.86938 0.84864 1.90549 1.48848 1.15745 1.83497 1.19838 0.80969 0.86319 0.84570 1.90697 1.48704 1.16824 1.85621 1.48197 1.51787 1.21746 1.07811 1.21861 0.95730 0.98479 0.85333 1.22002 0.97354 1.01367 0.95267 1.18673 0.95313 0.90078 0.93153 1.21157 1.24953 0.94437 1.14574 0.92785 1.24967 0.96799 0.95528 0.96705 1.69840 1.43238 0.99103 1.40742 0.86676 0.81414 0.76986 0.83011 1.20376 1.21317 1.20326 1.22023 0.96413 1.04403 0.93218 1.23050 0.96954 0.81493 1.03755 0.90580 0.91667 0.90927 0.86219 0.88394 0.76601 0.76801 0.74900 0.90145 0.91621 0.91924 0.92873 0.95435 0.92916 0.87680 0.94583 0.92185 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.48 37.16 0.35 -0.76 16 2 C 0.13 1.07 2.80 -67.93 -0.19 0.88 16 3 H 0.10 0.99 7.58 -51.93 -0.39 0.59 16 4 C 0.12 0.60 6.07 -4.04 -0.02 0.57 16 5 N -0.38 -3.15 3.69 -62.63 -0.23 -3.38 16 6 C 0.25 1.85 12.63 -90.66 -1.14 0.70 16 7 N -0.55 -5.73 11.19 -15.83 -0.18 -5.91 16 8 C 0.20 2.13 13.03 -91.81 -1.20 0.93 16 9 N -0.30 -3.49 11.55 29.29 0.34 -3.15 16 10 N -0.69 -8.12 4.07 -54.23 -0.22 -8.34 16 11 C 0.52 8.17 7.71 -11.58 -0.09 8.08 16 12 O -0.51 -8.91 12.85 5.50 0.07 -8.84 16 13 C 0.50 9.12 7.73 -11.58 -0.09 9.03 16 14 O -0.54 -10.36 15.93 5.50 0.09 -10.27 16 15 N -0.56 -10.84 2.98 -173.24 -0.52 -11.36 16 16 C 0.11 2.01 6.44 -3.71 -0.02 1.99 16 17 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 18 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 19 C -0.51 -13.91 8.56 -34.44 -0.29 -14.20 16 20 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 21 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 22 N -0.89 -25.00 11.30 55.43 0.63 -24.37 16 23 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 C -0.12 -2.86 5.15 -26.61 -0.14 -3.00 16 28 C 0.07 1.38 5.97 -3.69 -0.02 1.36 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.12 0.12 8.09 -51.93 -0.42 -0.30 16 33 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.22 0.52 8.06 -52.48 -0.42 0.10 16 35 H 0.22 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.41 4.82 7.98 -40.82 -0.33 4.49 16 37 H 0.08 1.44 7.01 -51.92 -0.36 1.08 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.11 2.73 6.03 -51.93 -0.31 2.42 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.12 2.39 4.34 -54.68 -0.24 2.16 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -34.17 377.27 -9.31 -43.48 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.67 Total: 4.90 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -3.28 Total: 5.43 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.18 Total: -56.51 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.16 Total: -19.11 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.17 -9.31 -43.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327984199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.542 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds