Wall clock time and date at job start Tue Mar 31 2020 19:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47073 * 2 1 4 4 C 1.35309 * 125.86567 * 125.00229 * 3 2 1 5 5 C 1.35348 * 106.17678 * 179.77071 * 4 3 2 6 6 C 1.50703 * 126.75473 * 180.24562 * 5 4 3 7 7 N 1.46501 * 109.46877 * 95.00395 * 6 5 4 8 8 C 1.34777 * 119.99413 * 180.02562 * 7 6 5 9 9 O 1.21341 * 120.00445 * 359.97438 * 8 7 6 10 10 C 1.49456 * 119.99385 * 179.97438 * 8 7 6 11 11 O 1.21345 * 120.00136 * 6.39821 * 10 8 7 12 12 N 1.34780 * 119.99724 * 186.39937 * 10 8 7 13 13 C 1.46926 * 120.62872 * 7.08432 * 12 10 8 14 14 C 1.53194 * 108.77641 * 233.58146 * 13 12 10 15 15 C 1.53039 * 109.31636 * 305.37293 * 14 13 12 16 16 C 1.53037 * 109.53853 * 61.35717 * 15 14 13 17 17 H 1.09005 * 109.49742 * 58.62372 * 16 15 14 18 18 C 1.50696 * 109.49629 * 178.68404 * 16 15 14 19 19 H 1.08004 * 120.00458 * 0.02562 * 18 16 15 20 20 C 1.37876 * 120.00034 * 180.02562 * 18 16 15 21 21 N 1.31513 * 120.00105 * 359.97438 * 20 18 16 22 22 Si 1.86806 * 120.00156 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47305 * 59.99382 * 22 20 18 24 24 H 1.48501 * 109.47266 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46622 * 299.99969 * 22 20 18 26 26 C 1.46922 * 120.62942 * 186.80326 * 12 10 8 27 27 N 1.33771 * 106.49627 * 0.22915 * 5 4 3 28 28 N 1.28641 * 108.88689 * 359.97438 * 27 5 4 29 29 H 1.08995 * 109.47180 * 299.99975 * 1 2 3 30 30 H 1.09001 * 109.47399 * 59.99444 * 1 2 3 31 31 H 1.08998 * 109.47185 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47200 * 240.00599 * 2 1 3 33 33 H 1.08991 * 109.47365 * 120.00425 * 2 1 3 34 34 H 1.08006 * 126.91190 * 0.03803 * 4 3 2 35 35 H 1.08998 * 109.47143 * 215.00651 * 6 5 4 36 36 H 1.09002 * 109.46854 * 335.00524 * 6 5 4 37 37 H 0.96996 * 120.00359 * 359.97438 * 7 6 5 38 38 H 1.08996 * 109.59257 * 353.37439 * 13 12 10 39 39 H 1.09008 * 109.58588 * 113.66039 * 13 12 10 40 40 H 1.09007 * 109.49247 * 65.32164 * 14 13 12 41 41 H 1.08994 * 109.49910 * 185.41335 * 14 13 12 42 42 H 1.08998 * 109.45756 * 181.38163 * 15 14 13 43 43 H 1.09005 * 109.45507 * 301.35311 * 15 14 13 44 44 H 0.97003 * 120.00153 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.58720 * 246.19831 * 26 12 10 46 46 H 1.08998 * 109.58458 * 6.63056 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8756 1.9190 0.8982 5 6 3.0577 3.2062 0.5217 6 6 3.9325 4.2290 1.1999 7 7 5.2431 4.2610 0.5461 8 6 6.1956 5.1066 0.9870 9 8 5.9673 5.8416 1.9251 10 6 7.5328 5.1388 0.3204 11 8 7.7242 4.4906 -0.6874 12 7 8.5262 5.8878 0.8387 13 6 8.3617 6.5540 2.1379 14 6 8.6711 8.0450 1.9702 15 6 10.0618 8.2071 1.3524 16 6 10.0876 7.5499 -0.0295 17 1 9.3307 8.0095 -0.6651 18 6 11.4477 7.7381 -0.6505 19 1 12.2174 8.2727 -0.1135 20 6 11.7096 7.2280 -1.9044 21 7 10.7726 6.5766 -2.5582 22 14 13.3958 7.4607 -2.6740 23 1 14.4259 6.8322 -1.8086 24 1 13.4202 6.8229 -4.0149 25 1 13.6817 8.9115 -2.8100 26 6 9.7965 6.0487 0.1182 27 7 2.3089 3.3920 -0.5711 28 7 1.7035 2.2925 -0.8529 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.3273 1.4201 1.7429 35 1 3.4661 5.2115 1.1272 36 1 4.0564 3.9624 2.2495 37 1 5.4257 3.6732 -0.2035 38 1 7.3358 6.4304 2.4847 39 1 9.0477 6.1157 2.8628 40 1 7.9270 8.4995 1.3160 41 1 8.6465 8.5334 2.9443 42 1 10.2943 9.2675 1.2547 43 1 10.8023 7.7305 1.9948 44 1 10.9570 6.2174 -3.4402 45 1 10.5988 5.5718 0.6811 46 1 9.7174 5.5916 -0.8682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328240550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:34 Heat of formation + Delta-G solvation = 18.453510 kcal Electronic energy + Delta-G solvation = -28635.427290 eV Core-core repulsion = 24562.066511 eV Total energy + Delta-G solvation = -4073.360779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.33952 -41.91284 -39.79318 -38.51164 -36.95550 -35.95548 -35.11309 -33.45003 -32.51151 -31.73894 -31.53686 -28.60399 -27.21942 -26.57899 -25.60341 -24.03733 -23.47014 -22.87486 -21.89396 -21.63926 -20.46035 -18.99207 -18.36274 -18.18757 -17.84125 -17.43742 -17.01783 -16.72651 -16.48662 -16.11687 -15.94664 -15.53300 -15.37671 -15.29243 -14.81310 -14.62594 -14.42693 -14.35199 -14.03169 -13.72806 -13.67291 -13.42463 -13.08768 -13.01740 -12.84728 -12.72791 -12.51033 -12.38219 -12.28024 -12.16377 -11.83510 -11.69122 -11.59943 -11.17333 -11.11513 -10.96705 -10.55118 -10.48577 -10.34918 -9.92981 -9.52335 -8.11669 -6.28346 0.36841 0.55640 1.03250 1.42009 1.43564 1.45764 1.51908 1.68933 2.17556 2.41957 2.67182 3.15904 3.16778 3.34637 3.61578 3.81912 3.97374 4.08330 4.18789 4.22516 4.29523 4.35527 4.38626 4.51617 4.61132 4.73310 4.73537 4.74766 4.80907 4.84520 4.91734 5.01263 5.07715 5.17299 5.23367 5.26353 5.29269 5.41468 5.54060 5.58097 5.64414 5.85205 5.94167 5.97750 6.29936 6.46037 6.72999 6.83746 7.00186 7.41483 7.42706 8.92242 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019179 B = 0.002299 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.603148 B =12177.661762 C =13257.179616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.099 3.901 3 N -0.285 5.285 4 C -0.001 4.001 5 C -0.066 4.066 6 C 0.211 3.789 7 N -0.684 5.684 8 C 0.527 3.473 9 O -0.514 6.514 10 C 0.485 3.515 11 O -0.562 6.562 12 N -0.574 5.574 13 C 0.049 3.951 14 C -0.121 4.121 15 C -0.106 4.106 16 C 0.038 3.962 17 H -0.013 1.013 18 C -0.535 4.535 19 H 0.064 0.936 20 C 0.009 3.991 21 N -0.917 5.917 22 Si 0.960 3.040 23 H -0.266 1.266 24 H -0.288 1.288 25 H -0.269 1.269 26 C 0.122 3.878 27 N -0.296 5.296 28 N -0.114 5.114 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.147 0.853 34 H 0.241 0.759 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.413 0.587 38 H 0.158 0.842 39 H 0.074 0.926 40 H 0.044 0.956 41 H 0.099 0.901 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.261 0.739 45 H 0.046 0.954 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.151 -15.652 13.853 28.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.078 5.078 4 C -0.155 4.155 5 C -0.205 4.205 6 C 0.088 3.912 7 N -0.336 5.336 8 C 0.308 3.692 9 O -0.392 6.392 10 C 0.268 3.732 11 O -0.442 6.442 12 N -0.305 5.305 13 C -0.071 4.071 14 C -0.159 4.159 15 C -0.144 4.144 16 C 0.018 3.982 17 H 0.005 0.995 18 C -0.573 4.573 19 H 0.082 0.918 20 C -0.190 4.190 21 N -0.555 5.555 22 Si 0.785 3.215 23 H -0.191 1.191 24 H -0.214 1.214 25 H -0.194 1.194 26 C 0.000 4.000 27 N -0.163 5.163 28 N -0.093 5.093 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.165 0.835 34 H 0.257 0.743 35 H 0.101 0.899 36 H 0.143 0.857 37 H 0.249 0.751 38 H 0.174 0.826 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.118 0.882 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.128 -15.283 12.552 28.218 hybrid contribution 1.643 -0.290 -0.738 1.824 sum -18.485 -15.573 11.814 26.904 Atomic orbital electron populations 1.22069 0.92513 1.05026 1.02652 1.22652 0.97157 0.74186 1.07903 1.47970 1.29448 1.12943 1.17478 1.24152 0.97596 0.94125 0.99594 1.21977 1.04492 0.96196 0.97859 1.19626 0.78272 0.97026 0.96311 1.45826 1.12716 1.39287 1.35763 1.19814 0.85129 0.80848 0.83368 1.90279 1.79679 1.40796 1.28463 1.20486 0.86336 0.81223 0.85159 1.90734 1.82840 1.43913 1.26683 1.48474 1.14473 1.45901 1.21682 1.23346 1.08587 0.92531 0.82607 1.21833 0.96492 0.95962 1.01656 1.21556 0.96674 0.99890 0.96263 1.18998 0.95180 0.90937 0.93052 0.99490 1.21468 0.98415 1.35733 1.01708 0.91822 1.25914 1.00694 0.94683 0.97726 1.70060 1.34685 1.37157 1.13616 0.85576 0.79980 0.78547 0.77364 1.19065 1.21416 1.19447 1.22019 0.81306 1.00012 0.96658 1.75095 1.09211 1.17418 1.14581 1.78258 1.21667 0.93262 1.16142 0.92205 0.92983 0.87212 0.87261 0.83496 0.74263 0.89908 0.85728 0.75069 0.82553 0.90787 0.93721 0.88226 0.92927 0.92262 0.93005 0.93533 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 10.04 71.98 0.72 -0.04 16 2 C 0.10 0.40 7.18 86.38 0.62 1.02 16 3 N -0.29 -3.95 3.44 -347.74 -1.20 -5.15 16 4 C 0.00 -0.02 11.50 83.49 0.96 0.94 16 5 C -0.07 -1.29 6.61 41.60 0.28 -1.01 16 6 C 0.21 4.04 6.23 85.63 0.53 4.57 16 7 N -0.68 -17.59 5.54 -468.14 -2.59 -20.19 16 8 C 0.53 16.92 7.78 87.27 0.68 17.60 16 9 O -0.51 -16.17 13.10 -3.22 -0.04 -16.21 16 10 C 0.49 20.20 7.74 87.27 0.68 20.87 16 11 O -0.56 -27.25 15.94 -3.23 -0.05 -27.30 16 12 N -0.57 -24.43 2.97 -819.63 -2.43 -26.86 16 13 C 0.05 1.67 6.27 86.36 0.54 2.21 16 14 C -0.12 -4.15 6.08 30.67 0.19 -3.96 16 15 C -0.11 -4.35 5.10 30.62 0.16 -4.19 16 16 C 0.04 1.95 2.26 -11.32 -0.03 1.93 16 17 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 18 C -0.53 -29.83 8.56 25.60 0.22 -29.61 16 19 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 20 C 0.01 0.52 5.30 84.65 0.45 0.97 16 21 N -0.92 -55.89 11.41 21.45 0.24 -55.65 16 22 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 C 0.12 6.19 5.41 86.51 0.47 6.66 16 27 N -0.30 -7.97 12.41 -48.60 -0.60 -8.58 16 28 N -0.11 -2.68 12.91 37.02 0.48 -2.20 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.05 0.51 8.12 -2.39 -0.02 0.49 16 31 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.15 -0.54 8.07 -2.39 -0.02 -0.56 16 34 H 0.24 0.32 8.06 -2.91 -0.02 0.30 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.41 11.17 7.95 -92.71 -0.74 10.43 16 38 H 0.16 4.97 3.78 -78.81 -0.30 4.67 16 39 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 44 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 45 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.08 4.87 5.20 -2.39 -0.01 4.86 16 Total: -1.00 -80.57 379.57 2.28 -78.30 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -0.02 Total: 19.34 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 6.46 Total: 17.96 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -6.10 Total: -118.61 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -0.09 Total: -43.51 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -80.57 2.28 -78.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328240550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.749 kcal (2) G-P(sol) polarization free energy of solvation -80.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds