Wall clock time and date at job start Tue Mar 31 2020 19:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46700 * 2 1 4 4 N 1.28602 * 124.61991 * 90.02857 * 3 2 1 5 5 C 1.31381 * 108.71422 * 179.97438 * 4 3 2 6 6 C 1.39670 * 105.90139 * 0.25715 * 5 4 3 7 7 C 1.50701 * 127.04796 * 179.74167 * 6 5 4 8 8 N 1.46505 * 109.47583 * 94.99683 * 7 6 5 9 9 C 1.34774 * 120.00155 * 179.97438 * 8 7 6 10 10 O 1.21347 * 120.00120 * 0.02562 * 9 8 7 11 11 C 1.49458 * 119.99596 * 180.02562 * 9 8 7 12 12 O 1.21348 * 119.99937 * 353.06982 * 11 9 8 13 13 N 1.34773 * 119.99441 * 173.07559 * 11 9 8 14 14 C 1.46920 * 120.63396 * 1.66749 * 13 11 9 15 15 C 1.52759 * 109.00819 * 233.58627 * 14 13 11 16 16 C 1.53040 * 109.38677 * 305.58762 * 15 14 13 17 17 C 1.50700 * 109.45099 * 181.25410 * 16 15 14 18 18 H 1.07999 * 119.99782 * 239.94481 * 17 16 15 19 19 C 1.37869 * 119.99988 * 59.93862 * 17 16 15 20 20 N 1.31517 * 120.00054 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99937 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47211 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46885 * 120.00596 * 21 19 17 24 24 H 1.48499 * 109.47190 * 240.00212 * 21 19 17 25 25 C 1.53041 * 109.53365 * 61.23928 * 16 15 14 26 26 C 1.46926 * 120.62546 * 181.95306 * 13 11 9 27 27 N 1.28599 * 124.61491 * 270.01882 * 3 2 1 28 28 H 1.09003 * 109.47255 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47536 * 300.00116 * 1 2 3 30 30 H 1.09004 * 109.46892 * 60.00616 * 1 2 3 31 31 H 1.09000 * 109.46818 * 239.99801 * 2 1 3 32 32 H 1.09002 * 109.46797 * 119.99925 * 2 1 3 33 33 H 1.08000 * 127.04401 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.47485 * 215.00147 * 7 6 5 35 35 H 1.09008 * 109.47209 * 335.00211 * 7 6 5 36 36 H 0.97002 * 119.99371 * 0.02562 * 8 7 6 37 37 H 1.08993 * 109.58798 * 353.42384 * 14 13 11 38 38 H 1.09002 * 109.58634 * 113.84805 * 14 13 11 39 39 H 1.09006 * 109.56449 * 185.55298 * 15 14 13 40 40 H 1.08994 * 109.36145 * 65.50378 * 15 14 13 41 41 H 1.09001 * 109.45913 * 301.22468 * 16 15 14 42 42 H 0.97005 * 119.99587 * 179.97438 * 20 19 17 43 43 H 1.09008 * 109.49686 * 178.68031 * 25 16 15 44 44 H 1.08998 * 109.52578 * 58.60509 * 25 16 15 45 45 H 1.08998 * 109.58754 * 246.15496 * 26 13 11 46 46 H 1.09001 * 109.58963 * 6.43485 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2622 2.0699 1.0583 5 6 2.6837 3.2611 0.6983 6 6 2.6776 3.2631 -0.6984 7 6 3.0713 4.3996 -1.6064 8 7 4.4731 4.2449 -2.0030 9 6 5.0462 5.1507 -2.8201 10 8 4.4012 6.0947 -3.2269 11 6 6.4761 4.9925 -3.2250 12 8 7.1566 4.1230 -2.7216 13 7 7.0097 5.8156 -4.1492 14 6 6.2090 6.8961 -4.7408 15 6 6.2600 6.7771 -6.2629 16 6 7.7197 6.7524 -6.7219 17 6 7.7716 6.6660 -8.2255 18 1 8.2593 5.8283 -8.7018 19 6 7.1963 7.6563 -8.9932 20 7 6.6028 8.6766 -8.4132 21 14 7.2612 7.5495 -10.8570 22 1 7.9805 6.3135 -11.2573 23 1 5.8792 7.5151 -11.3992 24 1 7.9751 8.7348 -11.3962 25 6 8.4260 5.5371 -6.1167 26 6 8.4013 5.6456 -4.5888 27 7 2.2614 2.0701 -1.0584 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9710 4.0737 1.3490 34 1 2.4394 4.3908 -2.4945 35 1 2.9450 5.3458 -1.0800 36 1 4.9885 3.4901 -1.6781 37 1 5.1760 6.8122 -4.4035 38 1 6.6169 7.8607 -4.4387 39 1 5.7515 7.6298 -6.7130 40 1 5.7664 5.8551 -6.5700 41 1 8.2192 7.6637 -6.3930 42 1 6.1984 9.3735 -8.9534 43 1 9.4592 5.5070 -6.4627 44 1 7.9125 4.6264 -6.4250 45 1 8.9917 6.5060 -4.2740 46 1 8.8151 4.7380 -4.1492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328802847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:44 Heat of formation + Delta-G solvation = 55.260634 kcal Electronic energy + Delta-G solvation = -28499.222638 eV Core-core repulsion = 24427.457936 eV Total energy + Delta-G solvation = -4071.764702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.97139 -40.65426 -38.51956 -37.00728 -35.97015 -34.73610 -33.42370 -32.76089 -31.19490 -31.03261 -30.03248 -27.91670 -26.41465 -24.74827 -24.11635 -22.57117 -22.33256 -21.94415 -21.19179 -20.32211 -18.93870 -17.86445 -17.33258 -16.97640 -16.65984 -16.28972 -15.83680 -15.54743 -15.50053 -14.95248 -14.60115 -14.51996 -14.38854 -13.90897 -13.57566 -13.36552 -13.15831 -13.01875 -12.86489 -12.72820 -12.64983 -12.27332 -11.96396 -11.75708 -11.71790 -11.39528 -11.16725 -10.94756 -10.80983 -10.67933 -10.53604 -10.32997 -10.05246 -9.78710 -9.63211 -9.38052 -9.18884 -9.14816 -8.48348 -8.28845 -8.05814 -5.98267 -4.04598 1.36235 1.63119 1.82396 1.88983 2.70492 3.30066 3.38398 3.42114 3.43925 3.62239 3.84032 4.21211 4.28343 4.44214 4.44395 4.54938 4.56792 4.74987 4.98821 5.06959 5.18634 5.31431 5.35807 5.45000 5.66462 5.70321 5.75808 5.82894 5.90450 6.06383 6.13144 6.28401 6.29064 6.49859 6.64688 6.75895 6.83677 7.00367 7.11822 7.20065 7.33964 7.69841 7.82244 7.91809 7.93159 7.99020 8.11099 8.27715 8.45057 8.98870 9.60159 11.07156 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.002156 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.336271 B =12983.097753 C =13463.460477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.134 3.866 3 N -0.151 5.151 4 N -0.290 5.290 5 C -0.006 4.006 6 C -0.022 4.022 7 C 0.211 3.789 8 N -0.700 5.700 9 C 0.515 3.485 10 O -0.500 6.500 11 C 0.500 3.500 12 O -0.546 6.546 13 N -0.558 5.558 14 C 0.044 3.956 15 C -0.121 4.121 16 C 0.045 3.955 17 C -0.512 4.512 18 H 0.055 0.945 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.122 4.122 26 C 0.106 3.894 27 N -0.265 5.265 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.201 0.799 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.413 0.587 37 H 0.142 0.858 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.035 0.965 41 H 0.027 0.973 42 H 0.260 0.740 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.759 -13.209 19.320 25.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.015 3.985 3 N -0.053 5.053 4 N -0.130 5.130 5 C -0.189 4.189 6 C -0.184 4.184 7 C 0.086 3.914 8 N -0.355 5.355 9 C 0.297 3.703 10 O -0.376 6.376 11 C 0.282 3.718 12 O -0.426 6.426 13 N -0.289 5.289 14 C -0.076 4.076 15 C -0.159 4.159 16 C 0.026 3.974 17 C -0.550 4.550 18 H 0.073 0.927 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.718 3.282 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.161 4.161 26 C -0.015 4.015 27 N -0.108 5.108 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.218 0.782 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.249 0.751 37 H 0.158 0.842 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.427 -14.130 19.238 26.464 hybrid contribution 0.578 0.543 -0.954 1.241 sum -10.849 -13.587 18.284 25.232 Atomic orbital electron populations 1.22188 0.92983 1.04025 1.03738 1.22043 0.96132 0.74300 1.06013 1.48229 1.44440 1.13402 0.99198 1.74093 1.17259 1.05534 1.16083 1.24739 1.03908 0.95821 0.94451 1.23035 1.06890 0.94252 0.94258 1.19453 0.81882 0.93093 0.96951 1.45770 1.12376 1.28445 1.48863 1.20400 0.88423 0.82536 0.78932 1.90392 1.64503 1.30555 1.52128 1.19775 0.87381 0.82934 0.81716 1.90699 1.62068 1.34542 1.55300 1.48254 1.13704 1.30255 1.36692 1.23448 0.99525 0.87533 0.97077 1.21904 1.01007 1.02693 0.90335 1.18696 0.91661 0.92126 0.94878 1.21228 1.35628 1.07072 0.91062 0.92708 1.24967 0.95294 0.95353 0.98430 1.69860 1.37379 1.10718 1.34900 0.86569 0.77688 0.77904 0.86020 1.19889 1.21067 1.21090 1.22014 1.01124 1.01396 0.91524 1.21892 0.80680 1.01847 0.97124 1.74064 1.15947 1.04954 1.15846 0.89469 0.91410 0.91285 0.87173 0.87245 0.78239 0.89012 0.88358 0.75093 0.84153 0.92203 0.87671 0.94591 0.95445 0.93035 0.91898 0.92906 0.91502 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.24 37.16 0.38 -0.33 16 2 C 0.13 0.69 7.26 -4.04 -0.03 0.66 16 3 N -0.15 -1.39 3.95 -10.62 -0.04 -1.43 16 4 N -0.29 -2.84 12.05 30.67 0.37 -2.47 16 5 C -0.01 -0.05 12.16 -17.21 -0.21 -0.26 16 6 C -0.02 -0.21 6.72 -82.25 -0.55 -0.77 16 7 C 0.21 2.07 6.26 -5.19 -0.03 2.04 16 8 N -0.70 -8.40 5.54 -61.90 -0.34 -8.74 16 9 C 0.51 7.88 7.80 -11.58 -0.09 7.79 16 10 O -0.50 -8.42 13.02 5.50 0.07 -8.35 16 11 C 0.50 8.81 7.76 -11.58 -0.09 8.72 16 12 O -0.55 -10.17 15.91 5.50 0.09 -10.08 16 13 N -0.56 -10.49 2.98 -173.55 -0.52 -11.01 16 14 C 0.04 0.88 6.20 -3.94 -0.02 0.85 16 15 C -0.12 -2.83 5.14 -26.83 -0.14 -2.96 16 16 C 0.04 1.09 2.07 -91.73 -0.19 0.91 16 17 C -0.51 -13.88 8.56 -34.44 -0.29 -14.18 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 20 N -0.89 -24.98 11.31 55.43 0.63 -24.35 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C -0.12 -2.53 5.30 -26.61 -0.14 -2.68 16 26 C 0.11 1.95 6.43 -3.71 -0.02 1.93 16 27 N -0.26 -2.85 12.05 33.71 0.41 -2.45 16 28 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.20 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.81 8.14 -51.92 -0.42 0.38 16 36 H 0.41 4.83 7.95 -40.82 -0.32 4.51 16 37 H 0.14 2.75 3.78 -56.98 -0.22 2.53 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.11 2.74 6.03 -51.93 -0.31 2.42 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.08 1.41 7.01 -51.93 -0.36 1.05 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -32.48 379.59 -6.85 -39.33 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.68 Total: 4.36 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -1.53 Total: 3.29 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.50 Total: -50.45 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.16 Total: -18.43 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.48 -6.85 -39.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328802847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.586 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds