Wall clock time and date at job start Tue Mar 31 2020 19:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46700 * 2 1 4 4 N 1.28602 * 124.61991 * 90.02857 * 3 2 1 5 5 C 1.31381 * 108.71422 * 179.97438 * 4 3 2 6 6 C 1.39670 * 105.90139 * 0.25715 * 5 4 3 7 7 C 1.50701 * 127.04796 * 179.74167 * 6 5 4 8 8 N 1.46505 * 109.47583 * 94.99683 * 7 6 5 9 9 C 1.34774 * 120.00155 * 179.97438 * 8 7 6 10 10 O 1.21347 * 120.00120 * 0.02562 * 9 8 7 11 11 C 1.49458 * 119.99596 * 180.02562 * 9 8 7 12 12 O 1.21348 * 119.99937 * 353.06982 * 11 9 8 13 13 N 1.34773 * 119.99441 * 173.07559 * 11 9 8 14 14 C 1.46920 * 120.63396 * 1.66749 * 13 11 9 15 15 C 1.52759 * 109.00819 * 233.58627 * 14 13 11 16 16 C 1.53040 * 109.38677 * 305.58762 * 15 14 13 17 17 C 1.50700 * 109.45099 * 181.25410 * 16 15 14 18 18 H 1.07999 * 119.99782 * 239.94481 * 17 16 15 19 19 C 1.37869 * 119.99988 * 59.93862 * 17 16 15 20 20 N 1.31517 * 120.00054 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99937 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47211 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46885 * 120.00596 * 21 19 17 24 24 H 1.48499 * 109.47190 * 240.00212 * 21 19 17 25 25 C 1.53041 * 109.53365 * 61.23928 * 16 15 14 26 26 C 1.46926 * 120.62546 * 181.95306 * 13 11 9 27 27 N 1.28599 * 124.61491 * 270.01882 * 3 2 1 28 28 H 1.09003 * 109.47255 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47536 * 300.00116 * 1 2 3 30 30 H 1.09004 * 109.46892 * 60.00616 * 1 2 3 31 31 H 1.09000 * 109.46818 * 239.99801 * 2 1 3 32 32 H 1.09002 * 109.46797 * 119.99925 * 2 1 3 33 33 H 1.08000 * 127.04401 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.47485 * 215.00147 * 7 6 5 35 35 H 1.09008 * 109.47209 * 335.00211 * 7 6 5 36 36 H 0.97002 * 119.99371 * 0.02562 * 8 7 6 37 37 H 1.08993 * 109.58798 * 353.42384 * 14 13 11 38 38 H 1.09002 * 109.58634 * 113.84805 * 14 13 11 39 39 H 1.09006 * 109.56449 * 185.55298 * 15 14 13 40 40 H 1.08994 * 109.36145 * 65.50378 * 15 14 13 41 41 H 1.09001 * 109.45913 * 301.22468 * 16 15 14 42 42 H 0.97005 * 119.99587 * 179.97438 * 20 19 17 43 43 H 1.09008 * 109.49686 * 178.68031 * 25 16 15 44 44 H 1.08998 * 109.52578 * 58.60509 * 25 16 15 45 45 H 1.08998 * 109.58754 * 246.15496 * 26 13 11 46 46 H 1.09001 * 109.58963 * 6.43485 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2622 2.0699 1.0583 5 6 2.6837 3.2611 0.6983 6 6 2.6776 3.2631 -0.6984 7 6 3.0713 4.3996 -1.6064 8 7 4.4731 4.2449 -2.0030 9 6 5.0462 5.1507 -2.8201 10 8 4.4012 6.0947 -3.2269 11 6 6.4761 4.9925 -3.2250 12 8 7.1566 4.1230 -2.7216 13 7 7.0097 5.8156 -4.1492 14 6 6.2090 6.8961 -4.7408 15 6 6.2600 6.7771 -6.2629 16 6 7.7197 6.7524 -6.7219 17 6 7.7716 6.6660 -8.2255 18 1 8.2593 5.8283 -8.7018 19 6 7.1963 7.6563 -8.9932 20 7 6.6028 8.6766 -8.4132 21 14 7.2612 7.5495 -10.8570 22 1 7.9805 6.3135 -11.2573 23 1 5.8792 7.5151 -11.3992 24 1 7.9751 8.7348 -11.3962 25 6 8.4260 5.5371 -6.1167 26 6 8.4013 5.6456 -4.5888 27 7 2.2614 2.0701 -1.0584 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9710 4.0737 1.3490 34 1 2.4394 4.3908 -2.4945 35 1 2.9450 5.3458 -1.0800 36 1 4.9885 3.4901 -1.6781 37 1 5.1760 6.8122 -4.4035 38 1 6.6169 7.8607 -4.4387 39 1 5.7515 7.6298 -6.7130 40 1 5.7664 5.8551 -6.5700 41 1 8.2192 7.6637 -6.3930 42 1 6.1984 9.3735 -8.9534 43 1 9.4592 5.5070 -6.4627 44 1 7.9125 4.6264 -6.4250 45 1 8.9917 6.5060 -4.2740 46 1 8.8151 4.7380 -4.1492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328802847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:43 Heat of formation + Delta-G solvation = 32.450391 kcal Electronic energy + Delta-G solvation = -28500.211765 eV Core-core repulsion = 24427.457936 eV Total energy + Delta-G solvation = -4072.753828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.65070 -41.99587 -39.87641 -38.58828 -36.86477 -35.57616 -35.11997 -33.52511 -33.00729 -31.74278 -31.67970 -28.90626 -28.05608 -25.89052 -25.03928 -24.13722 -23.63587 -22.94829 -21.92979 -21.71566 -20.52582 -18.86361 -18.42927 -18.33472 -18.03242 -17.50757 -17.12622 -16.80581 -16.45515 -16.23457 -15.90333 -15.61179 -15.37785 -15.08675 -14.77523 -14.65925 -14.55985 -14.36616 -14.08932 -13.86400 -13.72513 -13.37122 -13.19207 -13.07466 -12.83124 -12.49443 -12.48566 -12.32811 -12.26475 -12.13708 -11.90979 -11.87559 -11.50236 -11.41081 -11.04855 -10.99965 -10.46608 -10.40839 -10.37017 -9.89207 -9.67795 -8.06354 -6.20079 0.32126 0.61636 1.05985 1.34693 1.40715 1.43318 1.53727 1.58658 2.11599 2.44711 2.56067 2.99150 3.19955 3.27295 3.59439 3.92570 3.93598 4.12431 4.14330 4.24589 4.29085 4.34519 4.43652 4.53170 4.55635 4.59271 4.70917 4.76275 4.77292 4.82617 4.96242 4.99372 5.13240 5.13508 5.15539 5.21509 5.33911 5.41481 5.52829 5.64641 5.69126 5.95838 5.99818 6.13212 6.30377 6.39962 6.67703 6.89631 6.91914 7.24606 7.47545 8.97401 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.002156 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.336271 B =12983.097753 C =13463.460477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.122 3.878 3 N -0.150 5.150 4 N -0.306 5.306 5 C -0.004 4.004 6 C -0.031 4.031 7 C 0.213 3.787 8 N -0.681 5.681 9 C 0.519 3.481 10 O -0.517 6.517 11 C 0.501 3.499 12 O -0.554 6.554 13 N -0.567 5.567 14 C 0.059 3.941 15 C -0.111 4.111 16 C 0.042 3.958 17 C -0.533 4.533 18 H 0.050 0.950 19 C 0.013 3.987 20 N -0.913 5.913 21 Si 0.951 3.049 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.280 1.280 25 C -0.113 4.113 26 C 0.111 3.889 27 N -0.288 5.288 28 H 0.113 0.887 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.228 0.772 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.416 0.584 37 H 0.151 0.849 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.022 0.978 41 H 0.003 0.997 42 H 0.261 0.739 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.078 0.922 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 -14.334 20.471 27.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.004 3.996 3 N -0.053 5.053 4 N -0.146 5.146 5 C -0.186 4.186 6 C -0.193 4.193 7 C 0.090 3.910 8 N -0.334 5.334 9 C 0.301 3.699 10 O -0.395 6.395 11 C 0.284 3.716 12 O -0.434 6.434 13 N -0.298 5.298 14 C -0.061 4.061 15 C -0.150 4.150 16 C 0.023 3.977 17 C -0.571 4.571 18 H 0.068 0.932 19 C -0.185 4.185 20 N -0.553 5.553 21 Si 0.777 3.223 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.206 1.206 25 C -0.152 4.152 26 C -0.011 4.011 27 N -0.132 5.132 28 H 0.131 0.869 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.245 0.755 34 H 0.105 0.895 35 H 0.138 0.862 36 H 0.253 0.747 37 H 0.167 0.833 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.022 0.978 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.097 0.903 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.769 -15.297 20.422 28.099 hybrid contribution 0.652 0.797 -1.256 1.624 sum -11.117 -14.500 19.166 26.480 Atomic orbital electron populations 1.22145 0.92237 1.05324 1.02454 1.22449 0.96762 0.72942 1.07430 1.48649 1.43822 1.14209 0.98643 1.74090 1.17871 1.06135 1.16520 1.25219 1.02912 0.96164 0.94336 1.23014 1.07498 0.94045 0.94735 1.19587 0.80089 0.94269 0.97101 1.45717 1.13223 1.27313 1.47175 1.19942 0.87377 0.83034 0.79595 1.90359 1.64367 1.31508 1.53258 1.20144 0.88352 0.82123 0.81011 1.90691 1.62655 1.34604 1.55419 1.48232 1.13780 1.30444 1.37362 1.23228 1.00464 0.87987 0.94420 1.21680 0.99827 1.00603 0.92886 1.18668 0.92450 0.92668 0.93913 1.21580 1.35709 1.07021 0.92799 0.93194 1.25698 0.95059 0.95147 1.02624 1.69985 1.37792 1.11179 1.36294 0.85612 0.77676 0.77978 0.81001 1.19451 1.20766 1.20614 1.21859 1.00957 0.99056 0.93280 1.21842 0.80974 1.03023 0.95221 1.74021 1.16610 1.05683 1.16911 0.86887 0.92287 0.92817 0.86170 0.85453 0.75524 0.89520 0.86189 0.74688 0.83254 0.92261 0.90539 0.95889 0.97838 0.92980 0.91027 0.93744 0.90334 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 10.24 71.98 0.74 -0.41 16 2 C 0.12 1.08 7.26 86.38 0.63 1.71 16 3 N -0.15 -2.58 3.95 -187.50 -0.74 -3.32 16 4 N -0.31 -5.52 12.05 -56.87 -0.69 -6.20 16 5 C 0.00 -0.06 12.16 85.11 1.03 0.97 16 6 C -0.03 -0.56 6.72 42.97 0.29 -0.27 16 7 C 0.21 3.81 6.26 85.63 0.54 4.35 16 8 N -0.68 -15.16 5.54 -468.12 -2.59 -17.75 16 9 C 0.52 15.14 7.80 87.27 0.68 15.83 16 10 O -0.52 -16.79 13.02 -3.24 -0.04 -16.84 16 11 C 0.50 16.95 7.76 87.27 0.68 17.63 16 12 O -0.55 -19.63 15.91 -3.24 -0.05 -19.68 16 13 N -0.57 -20.82 2.98 -821.34 -2.45 -23.26 16 14 C 0.06 2.36 6.20 86.22 0.53 2.89 16 15 C -0.11 -5.31 5.14 30.53 0.16 -5.16 16 16 C 0.04 2.06 2.07 -11.51 -0.02 2.04 16 17 C -0.53 -29.35 8.56 25.60 0.22 -29.13 16 18 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 19 C 0.01 0.74 5.30 84.65 0.45 1.19 16 20 N -0.91 -52.18 11.31 21.44 0.24 -51.93 16 21 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 C -0.11 -4.67 5.30 30.67 0.16 -4.51 16 26 C 0.11 3.95 6.43 86.36 0.56 4.51 16 27 N -0.29 -5.89 12.05 -47.25 -0.57 -6.46 16 28 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.23 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.12 1.67 8.14 -2.38 -0.02 1.66 16 36 H 0.42 8.98 7.95 -92.71 -0.74 8.24 16 37 H 0.15 5.79 3.78 -82.29 -0.31 5.48 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.08 4.11 6.03 -2.38 -0.01 4.09 16 40 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 43 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 44 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.09 3.11 7.01 -2.39 -0.02 3.09 16 Total: -1.00 -69.51 379.59 1.75 -67.76 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.03 Total: 20.25 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 6.63 Total: 11.65 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -6.79 Total: -108.93 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.09 Total: -36.52 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -69.51 1.75 -67.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328802847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.215 kcal (2) G-P(sol) polarization free energy of solvation -69.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds