Wall clock time and date at job start Tue Mar 31 2020 18:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47118 * 2 1 4 4 C 1.53000 * 109.47072 * 120.00511 * 2 1 3 5 5 N 1.46503 * 109.46575 * 292.52571 * 4 2 1 6 6 C 1.46501 * 119.99819 * 95.98004 * 5 4 2 7 7 C 1.34779 * 120.00398 * 275.97523 * 5 4 2 8 8 O 1.21278 * 119.99579 * 4.91485 * 7 5 4 9 9 C 1.50701 * 119.99953 * 184.91796 * 7 5 4 10 10 H 1.08993 * 109.50689 * 326.52523 * 9 7 5 11 11 C 1.53103 * 109.50592 * 86.65901 * 9 7 5 12 12 O 1.43016 * 109.25496 * 176.78191 * 11 9 7 13 13 C 1.43017 * 113.73989 * 301.32624 * 12 11 9 14 14 C 1.53097 * 109.25671 * 58.67238 * 13 12 11 15 15 N 1.47012 * 109.50122 * 206.43579 * 9 7 5 16 16 C 1.46903 * 111.00160 * 57.67844 * 15 9 7 17 17 C 1.52995 * 109.47310 * 196.20796 * 16 15 9 18 18 F 1.39903 * 109.46939 * 293.83169 * 17 16 15 19 19 F 1.39904 * 109.46964 * 53.82876 * 17 16 15 20 20 N 1.46497 * 109.47175 * 240.00103 * 2 1 3 21 21 C 1.36943 * 120.00022 * 82.21121 * 20 2 1 22 22 H 1.07999 * 119.99582 * 5.39399 * 21 20 2 23 23 C 1.38810 * 120.00223 * 185.39875 * 21 20 2 24 24 N 1.31621 * 119.99906 * 185.75587 * 23 21 20 25 25 Si 1.86804 * 119.99701 * 5.75465 * 23 21 20 26 26 H 1.48499 * 109.47111 * 265.67818 * 25 23 21 27 27 H 1.48504 * 109.46844 * 145.68185 * 25 23 21 28 28 H 1.48491 * 109.47255 * 25.68360 * 25 23 21 29 29 H 1.08998 * 109.47380 * 299.99868 * 1 2 3 30 30 H 1.09000 * 109.47199 * 60.00021 * 1 2 3 31 31 H 1.09003 * 109.46969 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47149 * 52.52637 * 4 2 1 33 33 H 1.08999 * 109.47134 * 172.53239 * 4 2 1 34 34 H 1.08998 * 109.47282 * 89.99611 * 6 5 4 35 35 H 1.09003 * 109.47427 * 209.99611 * 6 5 4 36 36 H 1.09004 * 109.46992 * 329.99261 * 6 5 4 37 37 H 1.09003 * 109.50176 * 296.71285 * 11 9 7 38 38 H 1.08999 * 109.50740 * 56.84494 * 11 9 7 39 39 H 1.08999 * 109.50599 * 298.74017 * 13 12 11 40 40 H 1.08992 * 109.50871 * 178.60670 * 13 12 11 41 41 H 1.09004 * 109.50711 * 183.21891 * 14 13 12 42 42 H 1.08996 * 109.54514 * 63.10840 * 14 13 12 43 43 H 1.09003 * 109.46471 * 316.20774 * 16 15 9 44 44 H 1.08997 * 109.47335 * 76.20294 * 16 15 9 45 45 H 1.08996 * 109.47241 * 173.82534 * 17 16 15 46 46 H 0.97001 * 120.00406 * 262.21027 * 20 2 1 47 47 H 0.97001 * 119.99496 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.7038 0.0652 2.4386 6 6 0.4942 -0.2457 3.2045 7 6 2.5073 1.0747 2.8283 8 8 3.4592 1.3898 2.1461 9 6 2.2228 1.8116 4.1116 10 1 1.1460 1.8583 4.2735 11 6 2.8851 1.0773 5.2805 12 8 2.6755 1.8207 6.4841 13 6 3.1926 3.1532 6.4353 14 6 2.5335 3.9085 5.2782 15 7 2.7659 3.1750 4.0254 16 6 2.1969 3.8969 2.8794 17 6 3.0530 5.1281 2.5761 18 9 2.9597 6.0341 3.6380 19 9 4.3868 4.7394 2.4106 20 7 2.0183 -0.6906 -1.1962 21 6 2.0950 -0.0225 -2.3891 22 1 1.8791 1.0349 -2.4307 23 6 2.4502 -0.7044 -3.5449 24 7 2.6345 -0.0438 -4.6683 25 14 2.6666 -2.5594 -3.5057 26 1 4.0976 -2.8862 -3.2801 27 1 2.2253 -3.1367 -4.8008 28 1 1.8491 -3.1300 -2.4052 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.5716 -1.7031 1.3184 33 1 3.1217 -0.8385 1.1849 34 1 0.7317 -0.9759 3.9781 35 1 0.1139 0.6644 3.6684 36 1 -0.2629 -0.6569 2.5368 37 1 2.4446 0.0856 5.3837 38 1 3.9546 0.9834 5.0922 39 1 4.2710 3.1197 6.2806 40 1 2.9745 3.6629 7.3737 41 1 2.9660 4.9062 5.2014 42 1 1.4617 3.9895 5.4590 43 1 2.1815 3.2415 2.0086 44 1 1.1803 4.2106 3.1160 45 1 2.6966 5.6021 1.6616 46 1 2.2874 -1.6210 -1.1432 47 1 2.8831 -0.5203 -5.4758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331516876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:17 Heat of formation + Delta-G solvation = -138.105899 kcal Electronic energy + Delta-G solvation = -31422.057849 eV Core-core repulsion = 26891.218959 eV Total energy + Delta-G solvation = -4530.838891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.99118 -46.92159 -40.84412 -38.99945 -36.71267 -35.89545 -34.80800 -32.28534 -31.50701 -30.61811 -29.19507 -27.72650 -26.67825 -25.96256 -24.60233 -23.30831 -22.59085 -21.31407 -20.19490 -19.24837 -17.82397 -17.69113 -17.54204 -17.11926 -16.97932 -16.58195 -16.28478 -15.79735 -15.54175 -14.97107 -14.81080 -14.57620 -14.24072 -14.03275 -13.88870 -13.83197 -13.44182 -13.42726 -13.27810 -12.93199 -12.76423 -12.62184 -12.45321 -12.38700 -12.20209 -12.00099 -11.87118 -11.69906 -11.35584 -11.01498 -10.95860 -10.78539 -10.76236 -10.55545 -10.15532 -10.09140 -9.62816 -9.57276 -8.93819 -8.76312 -8.58191 -7.27896 -5.76337 -3.12208 2.49926 2.75661 3.22536 3.38372 3.40466 3.46071 3.53396 3.73229 4.12166 4.26232 4.37094 4.51192 4.53820 4.60018 4.64238 4.77575 4.85846 4.92544 4.99032 5.16634 5.21491 5.26812 5.31457 5.34686 5.38812 5.40416 5.48373 5.51233 5.52556 5.59960 5.63782 5.87622 6.10006 6.25130 6.29900 6.33468 6.43912 6.50396 6.71725 6.81179 6.94504 7.34312 7.99723 8.17602 8.42121 9.20332 9.92482 10.11623 11.42011 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.003415 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.359632 B = 8197.445860 C = 9352.972117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.166 3.834 3 H 0.057 0.943 4 C 0.110 3.890 5 N -0.609 5.609 6 C 0.071 3.929 7 C 0.510 3.490 8 O -0.496 6.496 9 C 0.032 3.968 10 H 0.074 0.926 11 C 0.080 3.920 12 O -0.379 6.379 13 C 0.062 3.938 14 C 0.003 3.997 15 N -0.509 5.509 16 C -0.001 4.001 17 C 0.273 3.727 18 F -0.210 7.210 19 F -0.186 7.186 20 N -0.744 5.744 21 C -0.239 4.239 22 H 0.088 0.912 23 C 0.005 3.995 24 N -0.933 5.933 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.276 1.276 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.046 0.954 43 H 0.114 0.886 44 H 0.065 0.935 45 H 0.115 0.885 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.095 6.013 24.724 25.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.056 3.944 3 H 0.075 0.925 4 C -0.013 4.013 5 N -0.344 5.344 6 C -0.072 4.072 7 C 0.295 3.705 8 O -0.369 6.369 9 C -0.080 4.080 10 H 0.092 0.908 11 C 0.002 3.998 12 O -0.298 6.298 13 C -0.015 4.015 14 C -0.125 4.125 15 N -0.234 5.234 16 C -0.130 4.130 17 C 0.219 3.781 18 F -0.192 7.192 19 F -0.167 7.167 20 N -0.387 5.387 21 C -0.369 4.369 22 H 0.106 0.894 23 C -0.191 4.191 24 N -0.580 5.580 25 Si 0.712 3.288 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.201 1.201 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.128 0.872 42 H 0.064 0.936 43 H 0.132 0.868 44 H 0.083 0.917 45 H 0.133 0.867 46 H 0.192 0.808 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.128 6.258 24.273 25.404 hybrid contribution -0.721 -1.147 -0.288 1.385 sum -4.849 5.112 23.984 24.998 Atomic orbital electron populations 1.22466 0.98993 1.00632 1.00308 1.20478 0.91927 0.96596 0.85433 0.92490 1.21887 1.01928 0.93655 0.83836 1.47823 1.24546 1.33678 1.28386 1.21981 0.87440 1.01271 0.96540 1.20120 0.83271 0.80614 0.86530 1.90827 1.28311 1.63580 1.54157 1.22431 0.99354 0.90674 0.95571 0.90821 1.22490 1.00918 0.94257 0.82132 1.88002 1.80813 1.25570 1.35366 1.22729 0.98403 0.82365 0.97988 1.23279 1.00125 0.99881 0.89191 1.61858 1.58201 1.00599 1.02789 1.23359 0.96360 0.96224 0.97058 1.21857 0.80450 0.87257 0.88522 1.92862 1.96274 1.69695 1.60331 1.93047 1.36326 1.91646 1.95712 1.42607 1.78829 1.11246 1.06033 1.19008 1.39661 0.94440 0.83818 0.89372 1.24681 1.01566 0.97371 0.95432 1.69715 1.53797 1.34496 1.00023 0.86558 0.77915 0.87425 0.76939 1.21134 1.21785 1.20143 0.94421 0.92356 0.93657 0.90621 0.89829 0.92448 0.91359 0.90101 0.87809 0.91198 0.91763 0.88015 0.87223 0.93618 0.86785 0.91668 0.86746 0.80818 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 8.72 37.16 0.32 -2.38 16 2 C 0.17 3.14 3.11 -67.93 -0.21 2.93 16 3 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 4 C 0.11 1.67 4.89 -4.04 -0.02 1.65 16 5 N -0.61 -7.47 2.66 -181.57 -0.48 -7.95 16 6 C 0.07 0.58 9.36 59.85 0.56 1.14 16 7 C 0.51 7.01 5.57 -10.98 -0.06 6.95 16 8 O -0.50 -9.17 15.05 5.56 0.08 -9.08 16 9 C 0.03 0.34 1.80 -68.75 -0.12 0.22 16 10 H 0.07 0.67 5.94 -51.93 -0.31 0.36 16 11 C 0.08 0.79 6.27 37.21 0.23 1.03 16 12 O -0.38 -3.83 10.83 -35.23 -0.38 -4.21 16 13 C 0.06 0.54 7.01 37.21 0.26 0.80 16 14 C 0.00 0.03 5.32 -3.71 -0.02 0.01 16 15 N -0.51 -5.88 4.04 -227.72 -0.92 -6.80 16 16 C 0.00 -0.01 5.00 -3.82 -0.02 -0.03 16 17 C 0.27 2.99 5.56 37.16 0.21 3.19 16 18 F -0.21 -2.23 14.52 2.25 0.03 -2.20 16 19 F -0.19 -2.77 17.15 2.25 0.04 -2.73 16 20 N -0.74 -17.50 4.92 -53.43 -0.26 -17.76 16 21 C -0.24 -6.78 10.38 -15.06 -0.16 -6.94 16 22 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 23 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 24 N -0.93 -29.49 13.97 55.49 0.78 -28.72 16 25 Si 0.88 22.04 27.67 -169.99 -4.70 17.33 16 26 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.28 -6.41 6.64 56.52 0.38 -6.03 16 29 H 0.04 0.50 6.34 -51.93 -0.33 0.17 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.00 8.02 -51.93 -0.42 0.58 16 33 H 0.08 1.44 7.68 -51.93 -0.40 1.04 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.46 5.92 -51.93 -0.31 0.15 16 36 H 0.08 0.64 6.62 -51.93 -0.34 0.30 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.11 1.03 5.44 -51.93 -0.28 0.74 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.11 1.52 5.91 -51.93 -0.31 1.21 16 44 H 0.07 0.56 8.04 -51.93 -0.42 0.15 16 45 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.36 8.21 5.79 -40.82 -0.24 7.97 16 47 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -35.37 373.44 -6.46 -41.83 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.15 Total: 6.05 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 0.88 Total: 8.61 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.89 Total: -61.23 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.30 Total: -13.30 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.07 Total: -4.93 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.70 Total: 17.33 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.37 -6.46 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331516876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.274 kcal (2) G-P(sol) polarization free energy of solvation -35.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds