Wall clock time and date at job start Tue Mar 31 2020 18:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47118 * 2 1 4 4 C 1.53000 * 109.47072 * 120.00511 * 2 1 3 5 5 N 1.46503 * 109.46575 * 292.52571 * 4 2 1 6 6 C 1.46501 * 119.99819 * 95.98004 * 5 4 2 7 7 C 1.34779 * 120.00398 * 275.97523 * 5 4 2 8 8 O 1.21278 * 119.99579 * 4.91485 * 7 5 4 9 9 C 1.50701 * 119.99953 * 184.91796 * 7 5 4 10 10 H 1.08993 * 109.50689 * 326.52523 * 9 7 5 11 11 C 1.53103 * 109.50592 * 86.65901 * 9 7 5 12 12 O 1.43016 * 109.25496 * 176.78191 * 11 9 7 13 13 C 1.43017 * 113.73989 * 301.32624 * 12 11 9 14 14 C 1.53097 * 109.25671 * 58.67238 * 13 12 11 15 15 N 1.47012 * 109.50122 * 206.43579 * 9 7 5 16 16 C 1.46903 * 111.00160 * 57.67844 * 15 9 7 17 17 C 1.52995 * 109.47310 * 196.20796 * 16 15 9 18 18 F 1.39903 * 109.46939 * 293.83169 * 17 16 15 19 19 F 1.39904 * 109.46964 * 53.82876 * 17 16 15 20 20 N 1.46497 * 109.47175 * 240.00103 * 2 1 3 21 21 C 1.36943 * 120.00022 * 82.21121 * 20 2 1 22 22 H 1.07999 * 119.99582 * 5.39399 * 21 20 2 23 23 C 1.38810 * 120.00223 * 185.39875 * 21 20 2 24 24 N 1.31621 * 119.99906 * 185.75587 * 23 21 20 25 25 Si 1.86804 * 119.99701 * 5.75465 * 23 21 20 26 26 H 1.48499 * 109.47111 * 265.67818 * 25 23 21 27 27 H 1.48504 * 109.46844 * 145.68185 * 25 23 21 28 28 H 1.48491 * 109.47255 * 25.68360 * 25 23 21 29 29 H 1.08998 * 109.47380 * 299.99868 * 1 2 3 30 30 H 1.09000 * 109.47199 * 60.00021 * 1 2 3 31 31 H 1.09003 * 109.46969 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47149 * 52.52637 * 4 2 1 33 33 H 1.08999 * 109.47134 * 172.53239 * 4 2 1 34 34 H 1.08998 * 109.47282 * 89.99611 * 6 5 4 35 35 H 1.09003 * 109.47427 * 209.99611 * 6 5 4 36 36 H 1.09004 * 109.46992 * 329.99261 * 6 5 4 37 37 H 1.09003 * 109.50176 * 296.71285 * 11 9 7 38 38 H 1.08999 * 109.50740 * 56.84494 * 11 9 7 39 39 H 1.08999 * 109.50599 * 298.74017 * 13 12 11 40 40 H 1.08992 * 109.50871 * 178.60670 * 13 12 11 41 41 H 1.09004 * 109.50711 * 183.21891 * 14 13 12 42 42 H 1.08996 * 109.54514 * 63.10840 * 14 13 12 43 43 H 1.09003 * 109.46471 * 316.20774 * 16 15 9 44 44 H 1.08997 * 109.47335 * 76.20294 * 16 15 9 45 45 H 1.08996 * 109.47241 * 173.82534 * 17 16 15 46 46 H 0.97001 * 120.00406 * 262.21027 * 20 2 1 47 47 H 0.97001 * 119.99496 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.7038 0.0652 2.4386 6 6 0.4942 -0.2457 3.2045 7 6 2.5073 1.0747 2.8283 8 8 3.4592 1.3898 2.1461 9 6 2.2228 1.8116 4.1116 10 1 1.1460 1.8583 4.2735 11 6 2.8851 1.0773 5.2805 12 8 2.6755 1.8207 6.4841 13 6 3.1926 3.1532 6.4353 14 6 2.5335 3.9085 5.2782 15 7 2.7659 3.1750 4.0254 16 6 2.1969 3.8969 2.8794 17 6 3.0530 5.1281 2.5761 18 9 2.9597 6.0341 3.6380 19 9 4.3868 4.7394 2.4106 20 7 2.0183 -0.6906 -1.1962 21 6 2.0950 -0.0225 -2.3891 22 1 1.8791 1.0349 -2.4307 23 6 2.4502 -0.7044 -3.5449 24 7 2.6345 -0.0438 -4.6683 25 14 2.6666 -2.5594 -3.5057 26 1 4.0976 -2.8862 -3.2801 27 1 2.2253 -3.1367 -4.8008 28 1 1.8491 -3.1300 -2.4052 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.5716 -1.7031 1.3184 33 1 3.1217 -0.8385 1.1849 34 1 0.7317 -0.9759 3.9781 35 1 0.1139 0.6644 3.6684 36 1 -0.2629 -0.6569 2.5368 37 1 2.4446 0.0856 5.3837 38 1 3.9546 0.9834 5.0922 39 1 4.2710 3.1197 6.2806 40 1 2.9745 3.6629 7.3737 41 1 2.9660 4.9062 5.2014 42 1 1.4617 3.9895 5.4590 43 1 2.1815 3.2415 2.0086 44 1 1.1803 4.2106 3.1160 45 1 2.6966 5.6021 1.6616 46 1 2.2874 -1.6210 -1.1432 47 1 2.8831 -0.5203 -5.4758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331516876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:16 Heat of formation + Delta-G solvation = -165.638196 kcal Electronic energy + Delta-G solvation = -31423.251739 eV Core-core repulsion = 26891.218959 eV Total energy + Delta-G solvation = -4532.032780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.91983 -47.90190 -41.78691 -39.93317 -38.03403 -36.85339 -36.20595 -34.05756 -32.65255 -31.45148 -30.90914 -28.72871 -27.52078 -26.89445 -25.84312 -24.92997 -23.44338 -22.37009 -21.61362 -20.34487 -19.62728 -18.70455 -18.48658 -18.09224 -17.84468 -17.52035 -17.17765 -16.87405 -16.59429 -16.31618 -15.86070 -15.73717 -15.53422 -15.16900 -15.01647 -14.85898 -14.69201 -14.61877 -14.35323 -14.25005 -13.86529 -13.65619 -13.60918 -13.43843 -13.36883 -13.14940 -12.91252 -12.78709 -12.57632 -12.49753 -12.31102 -12.16893 -12.05708 -11.88134 -11.80387 -11.53643 -11.03717 -10.94728 -10.60724 -9.70297 -9.54045 -9.32430 -8.03411 -5.37517 1.37714 1.41648 1.47112 1.50047 1.79472 2.40881 2.48911 2.79941 2.88438 3.28160 3.28612 3.40142 3.52299 3.68725 3.69670 3.77835 3.90099 3.98139 4.02496 4.14987 4.19842 4.22989 4.33017 4.37418 4.47626 4.50075 4.58934 4.62572 4.67291 4.77712 4.80924 4.86181 4.89893 4.91614 5.02836 5.18820 5.43882 5.53334 5.55381 5.73529 5.76316 5.98184 6.20057 6.36958 7.06507 7.15283 7.81058 8.01655 9.18506 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.003415 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.359632 B = 8197.445860 C = 9352.972117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 H 0.019 0.981 4 C 0.122 3.878 5 N -0.603 5.603 6 C 0.061 3.939 7 C 0.508 3.492 8 O -0.555 6.555 9 C 0.041 3.959 10 H 0.101 0.899 11 C 0.083 3.917 12 O -0.381 6.381 13 C 0.060 3.940 14 C 0.007 3.993 15 N -0.535 5.535 16 C 0.003 3.997 17 C 0.267 3.733 18 F -0.207 7.207 19 F -0.214 7.214 20 N -0.748 5.748 21 C -0.228 4.228 22 H 0.046 0.954 23 C -0.066 4.066 24 N -0.986 5.986 25 Si 0.957 3.043 26 H -0.283 1.283 27 H -0.295 1.295 28 H -0.241 1.241 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.129 0.871 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.141 0.859 46 H 0.367 0.633 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.314 4.225 27.927 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.053 3.947 3 H 0.037 0.963 4 C -0.002 4.002 5 N -0.337 5.337 6 C -0.080 4.080 7 C 0.295 3.705 8 O -0.432 6.432 9 C -0.070 4.070 10 H 0.118 0.882 11 C 0.005 3.995 12 O -0.299 6.299 13 C -0.017 4.017 14 C -0.120 4.120 15 N -0.262 5.262 16 C -0.126 4.126 17 C 0.213 3.787 18 F -0.188 7.188 19 F -0.195 7.195 20 N -0.392 5.392 21 C -0.359 4.359 22 H 0.064 0.936 23 C -0.257 4.257 24 N -0.636 5.636 25 Si 0.783 3.217 26 H -0.209 1.209 27 H -0.222 1.222 28 H -0.165 1.165 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.146 0.854 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.147 0.853 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.159 0.841 46 H 0.200 0.800 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.406 4.463 27.574 28.658 hybrid contribution -0.035 -0.439 -1.220 1.297 sum -6.441 4.024 26.354 27.426 Atomic orbital electron populations 1.22272 0.96319 1.01811 1.00547 1.20647 0.93674 0.94764 0.85579 0.96306 1.21566 1.00552 0.94833 0.83274 1.47868 1.25678 1.32708 1.27445 1.22340 0.85581 1.03125 0.96975 1.20709 0.82412 0.80401 0.86991 1.90807 1.30962 1.65320 1.56098 1.22408 1.00793 0.90006 0.93821 0.88165 1.22506 0.99779 0.95300 0.81889 1.88004 1.80733 1.26065 1.35147 1.22869 0.97658 0.82069 0.99085 1.23285 1.01072 0.99430 0.88207 1.61813 1.59343 1.01283 1.03750 1.23275 0.97725 0.95523 0.96077 1.22213 0.79061 0.87792 0.89663 1.92861 1.96134 1.69470 1.60332 1.92988 1.38603 1.92020 1.95916 1.42565 1.79296 1.11517 1.05795 1.18903 1.38125 0.92975 0.85923 0.93594 1.25573 1.02096 1.03144 0.94888 1.69915 1.55891 1.36823 1.00971 0.85358 0.78241 0.80366 0.77688 1.20905 1.22219 1.16503 0.90763 0.95551 0.91864 0.87289 0.92458 0.89684 0.89458 0.89209 0.85370 0.93450 0.93048 0.85309 0.87608 0.92015 0.89574 0.88853 0.84146 0.80023 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 8.72 71.98 0.63 -4.05 16 2 C 0.16 6.12 3.11 44.99 0.14 6.26 16 3 H 0.02 0.85 7.93 -2.39 -0.02 0.83 16 4 C 0.12 3.50 4.89 86.38 0.42 3.92 16 5 N -0.60 -13.39 2.66 -846.75 -2.25 -15.64 16 6 C 0.06 0.70 9.36 127.77 1.20 1.89 16 7 C 0.51 13.61 5.57 87.66 0.49 14.10 16 8 O -0.56 -21.41 15.05 -3.02 -0.05 -21.46 16 9 C 0.04 0.81 1.80 44.18 0.08 0.89 16 10 H 0.10 1.42 5.94 -2.39 -0.01 1.40 16 11 C 0.08 1.47 6.27 72.02 0.45 1.93 16 12 O -0.38 -6.67 10.83 -148.98 -1.61 -8.28 16 13 C 0.06 0.92 7.01 72.01 0.50 1.42 16 14 C 0.01 0.11 5.32 86.31 0.46 0.57 16 15 N -0.54 -11.86 4.04 -874.37 -3.53 -15.40 16 16 C 0.00 0.06 5.00 86.30 0.43 0.49 16 17 C 0.27 5.83 5.56 71.98 0.40 6.23 16 18 F -0.21 -4.22 14.52 44.97 0.65 -3.57 16 19 F -0.21 -6.67 17.15 44.97 0.77 -5.90 16 20 N -0.75 -35.20 4.92 -322.95 -1.59 -36.79 16 21 C -0.23 -13.39 10.38 84.03 0.87 -12.52 16 22 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 24 N -0.99 -64.70 13.97 21.65 0.30 -64.40 16 25 Si 0.96 45.65 27.67 68.60 1.90 47.55 16 26 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 28 H -0.24 -10.04 6.64 99.48 0.66 -9.38 16 29 H 0.07 1.75 6.34 -2.39 -0.02 1.73 16 30 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 2.43 8.02 -2.39 -0.02 2.42 16 33 H 0.06 1.97 7.68 -2.39 -0.02 1.95 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.09 0.71 5.92 -2.39 -0.01 0.69 16 36 H 0.09 0.93 6.62 -2.39 -0.02 0.92 16 37 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.11 1.83 5.44 -2.38 -0.01 1.82 16 42 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 2.37 5.91 -2.39 -0.01 2.36 16 44 H 0.09 1.41 8.04 -2.39 -0.02 1.39 16 45 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.37 16.13 5.79 -92.71 -0.54 15.60 16 47 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -82.85 373.44 1.54 -81.31 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.41 Total: 24.93 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 6.54 Total: 17.64 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -7.07 Total: -132.23 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -1.66 Total: -29.74 kcal Atomic # 9 Polarization: -10.89 SS G_CDS: 1.42 Total: -9.47 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Total: -82.85 1.54 -81.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331516876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.328 kcal (2) G-P(sol) polarization free energy of solvation -82.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds