Wall clock time and date at job start Tue Mar 31 2020 18:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50695 * 120.00679 * 2 1 4 4 N 1.46501 * 109.47249 * 126.60788 * 3 2 1 5 5 C 1.37833 * 127.14975 * 83.75442 * 4 3 2 6 6 C 1.46865 * 126.49829 * 359.97438 * 5 4 3 7 7 N 1.29424 * 125.88453 * 359.71224 * 6 5 4 8 8 O 1.41391 * 112.80059 * 179.68099 * 7 6 5 9 9 C 1.44195 * 107.61672 * 17.52508 * 8 7 6 10 10 H 1.08999 * 110.99625 * 92.66407 * 9 8 7 11 11 C 1.52996 * 110.96333 * 216.39982 * 9 8 7 12 12 O 1.42901 * 109.47315 * 287.40653 * 11 9 8 13 13 C 1.51686 * 125.89308 * 179.71452 * 6 5 4 14 14 N 1.31554 * 107.00980 * 179.72903 * 5 4 3 15 15 N 1.28521 * 109.86629 * 0.23112 * 14 5 4 16 16 C 1.31634 * 110.10026 * 359.97438 * 15 14 5 17 17 N 1.38136 * 126.33675 * 179.97438 * 16 15 14 18 18 C 1.46898 * 111.00224 * 251.92906 * 17 16 15 19 19 C 1.46897 * 111.00069 * 15.88987 * 17 16 15 20 20 H 1.08995 * 109.47453 * 54.99250 * 19 17 16 21 21 C 1.53004 * 109.46726 * 294.99710 * 19 17 16 22 22 C 1.50703 * 109.47349 * 174.99999 * 19 17 16 23 23 H 1.07992 * 119.99879 * 5.09190 * 22 19 17 24 24 C 1.37877 * 119.99691 * 185.09580 * 22 19 17 25 25 N 1.31509 * 120.00359 * 8.29886 * 24 22 19 26 26 Si 1.86796 * 119.99566 * 188.29453 * 24 22 19 27 27 H 1.48500 * 109.47072 * 94.98028 * 26 24 22 28 28 H 1.48498 * 109.47291 * 214.98030 * 26 24 22 29 29 H 1.48504 * 109.47641 * 334.97862 * 26 24 22 30 30 H 1.07999 * 120.00791 * 179.97438 * 1 2 3 31 31 H 1.08006 * 119.99625 * 359.97438 * 1 2 3 32 32 H 1.08006 * 119.99625 * 180.02562 * 2 1 3 33 33 H 1.09005 * 109.46962 * 6.61415 * 3 2 1 34 34 H 1.08998 * 109.47336 * 246.61149 * 3 2 1 35 35 H 1.08999 * 109.47403 * 47.41238 * 11 9 8 36 36 H 1.09005 * 109.47043 * 167.41086 * 11 9 8 37 37 H 0.96703 * 114.00459 * 180.02562 * 12 11 9 38 38 H 1.09001 * 110.79038 * 46.30672 * 13 6 5 39 39 H 1.09006 * 110.78820 * 282.85554 * 13 6 5 40 40 H 1.09001 * 109.46857 * 50.98371 * 18 17 16 41 41 H 1.09000 * 109.46899 * 170.97790 * 18 17 16 42 42 H 1.08994 * 109.47481 * 290.97956 * 18 17 16 43 43 H 1.08999 * 109.46910 * 183.52415 * 21 19 17 44 44 H 1.08996 * 109.47079 * 303.52278 * 21 19 17 45 45 H 1.09000 * 109.47046 * 63.52943 * 21 19 17 46 46 H 0.97001 * 119.99913 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0210 1.3160 1.1087 5 6 4.2885 0.7743 1.1194 6 6 4.9459 0.0680 0.0123 7 7 4.4315 -0.1620 -1.1528 8 8 5.3114 -0.8593 -2.0123 9 6 6.3401 -1.4535 -1.1951 10 1 6.0736 -2.4714 -0.9107 11 6 7.6924 -1.4240 -1.9101 12 8 7.6919 -2.3827 -2.9699 13 6 6.3449 -0.5178 0.0372 14 7 4.7997 1.0146 2.3075 15 7 3.9490 1.6545 3.0277 16 6 2.8433 1.8624 2.3443 17 7 1.7134 2.5168 2.7950 18 6 0.6136 1.5706 3.0254 19 6 2.0031 3.2929 4.0081 20 1 2.8333 3.9723 3.8152 21 6 2.3774 2.3404 5.1455 22 6 0.7839 4.0877 4.3992 23 1 -0.1406 3.9608 3.8556 24 6 0.8488 4.9768 5.4510 25 7 2.0077 5.2536 6.0075 26 14 -0.7095 5.7883 6.0853 27 1 -1.2383 5.0128 7.2360 28 1 -0.4035 7.1745 6.5215 29 1 -1.7256 5.8230 5.0029 30 1 -0.5401 -0.9352 -0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 1.3612 2.1301 0.1184 34 1 2.5985 1.4156 -0.9432 35 1 7.8650 -0.4290 -2.3203 36 1 8.4837 -1.6669 -1.2009 37 1 8.5202 -2.4193 -3.4676 38 1 6.5106 -1.0851 0.9531 39 1 7.0944 0.2657 -0.0748 40 1 0.9658 0.7491 3.6492 41 1 -0.2069 2.0827 3.5281 42 1 0.2658 1.1780 2.0699 43 1 2.5313 2.9110 6.0614 44 1 1.5726 1.6210 5.2966 45 1 3.2948 1.8108 4.8888 46 1 2.0533 5.8789 6.7477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338937524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:54 Heat of formation + Delta-G solvation = 103.845866 kcal Electronic energy + Delta-G solvation = -29625.517031 eV Core-core repulsion = 25555.859143 eV Total energy + Delta-G solvation = -4069.657888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.68367 -40.36703 -37.50309 -37.09369 -36.17915 -33.67266 -32.95951 -32.49320 -31.80432 -29.55880 -28.88781 -26.90494 -26.51658 -25.52596 -25.20272 -23.33324 -22.19728 -21.63276 -20.63422 -19.68365 -19.47000 -18.00843 -17.30873 -16.70542 -16.51662 -16.12590 -16.02589 -15.57138 -15.41599 -14.89926 -14.82918 -14.44006 -13.86159 -13.73796 -13.63062 -13.42017 -13.32717 -13.11529 -12.60496 -12.47516 -12.24139 -11.90524 -11.79134 -11.66670 -11.53687 -11.23912 -11.08961 -10.98255 -10.84489 -10.63910 -10.50871 -10.43275 -10.16223 -10.09759 -10.02213 -9.83496 -9.60809 -8.93363 -8.89727 -8.44023 -7.63134 -6.11406 -4.15227 0.82245 1.81727 2.35582 2.45146 2.76704 3.17680 3.25905 3.33471 3.35170 3.43959 3.89729 3.96638 4.26996 4.32934 4.49815 4.59595 4.64030 4.65583 4.78726 4.94381 4.98550 5.09111 5.11595 5.22330 5.30719 5.40210 5.47238 5.58026 5.65312 5.67836 5.92271 5.97036 6.08804 6.37577 6.39575 6.46479 6.61800 6.77311 7.00506 7.03040 7.15081 7.16280 7.32917 7.49310 7.68504 7.86662 8.10825 8.35998 8.83215 8.97574 9.48154 10.97544 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.002790 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.583117 B =10032.989818 C =10932.752238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.171 4.171 3 C 0.137 3.863 4 N -0.460 5.460 5 C 0.176 3.824 6 C 0.187 3.813 7 N -0.287 5.287 8 O -0.180 6.180 9 C 0.044 3.956 10 H 0.097 0.903 11 C 0.083 3.917 12 O -0.567 6.567 13 C -0.128 4.128 14 N -0.233 5.233 15 N -0.302 5.302 16 C 0.411 3.589 17 N -0.456 5.456 18 C 0.030 3.970 19 C 0.226 3.774 20 H 0.056 0.944 21 C -0.175 4.175 22 C -0.518 4.518 23 H 0.065 0.935 24 C 0.067 3.933 25 N -0.882 5.882 26 Si 0.897 3.103 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.384 0.616 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.032 0.968 41 H 0.099 0.901 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.023 0.977 45 H 0.057 0.943 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.667 -13.310 -14.282 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.190 4.190 3 C 0.015 3.985 4 N -0.155 5.155 5 C -0.086 4.086 6 C -0.004 4.004 7 N -0.031 5.031 8 O -0.200 6.200 9 C -0.015 4.015 10 H 0.115 0.885 11 C 0.004 3.996 12 O -0.372 6.372 13 C -0.167 4.167 14 N -0.080 5.080 15 N -0.151 5.151 16 C 0.056 3.944 17 N -0.180 5.180 18 C -0.117 4.117 19 C 0.122 3.878 20 H 0.074 0.926 21 C -0.234 4.234 22 C -0.556 4.556 23 H 0.083 0.917 24 C -0.137 4.137 25 N -0.519 5.519 26 Si 0.724 3.276 27 H -0.206 1.206 28 H -0.212 1.212 29 H -0.198 1.198 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.231 0.769 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.051 0.949 41 H 0.118 0.882 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.042 0.958 45 H 0.076 0.924 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.056 -12.815 -14.061 19.966 hybrid contribution -0.190 0.002 0.215 0.287 sum 5.866 -12.814 -13.846 19.757 Atomic orbital electron populations 1.23959 0.95446 1.02668 0.97902 1.22992 0.96229 0.97832 1.01967 1.21075 0.91328 0.97781 0.88303 1.46291 1.12889 1.43823 1.12499 1.20686 0.85050 1.07205 0.95685 1.22336 0.93397 0.93881 0.90836 1.78666 1.13728 1.09184 1.01534 1.91322 1.37392 1.65763 1.25536 1.23692 0.89628 0.98414 0.89786 0.88508 1.22195 0.94602 0.92908 0.89860 1.86511 1.41836 1.60751 1.48149 1.22784 0.94088 0.99602 1.00274 1.74438 1.23577 1.11082 0.98886 1.75139 1.00221 1.17734 1.21965 1.23218 0.95848 0.92958 0.82379 1.59163 1.00808 1.20459 1.37531 1.22524 0.94252 0.94363 1.00526 1.19449 0.98262 0.89798 0.80251 0.92614 1.22529 0.99170 0.99107 1.02599 1.20994 0.96130 1.23018 1.15459 0.91667 1.24885 0.96166 0.95982 0.96635 1.69982 1.23450 1.34376 1.24119 0.86509 0.83213 0.78651 0.79195 1.20650 1.21202 1.19802 0.87720 0.87617 0.87070 0.87261 0.87479 0.92171 0.91325 0.76864 0.86433 0.86959 0.94945 0.88211 0.92516 0.90814 0.95763 0.92446 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 12.56 29.02 0.36 -1.30 16 2 C -0.17 -2.07 9.33 -36.03 -0.34 -2.40 16 3 C 0.14 1.87 5.54 -5.20 -0.03 1.84 16 4 N -0.46 -7.72 2.82 -116.24 -0.33 -8.05 16 5 C 0.18 2.90 7.94 -153.71 -1.22 1.68 16 6 C 0.19 2.51 7.25 -79.63 -0.58 1.93 16 7 N -0.29 -3.98 10.90 35.17 0.38 -3.59 16 8 O -0.18 -2.41 12.23 -11.37 -0.14 -2.55 16 9 C 0.04 0.42 4.09 -25.83 -0.11 0.32 16 10 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 11 C 0.08 0.59 6.74 37.16 0.25 0.84 16 12 O -0.57 -4.59 13.66 -35.23 -0.48 -5.07 16 13 C -0.13 -1.23 6.60 -26.49 -0.17 -1.41 16 14 N -0.23 -4.40 12.24 32.46 0.40 -4.00 16 15 N -0.30 -6.48 8.92 30.26 0.27 -6.21 16 16 C 0.41 8.22 6.60 -319.25 -2.11 6.11 16 17 N -0.46 -9.51 4.70 -176.17 -0.83 -10.33 16 18 C 0.03 0.54 8.55 60.06 0.51 1.06 16 19 C 0.23 5.58 1.96 -68.86 -0.13 5.45 16 20 H 0.06 1.58 8.07 -51.93 -0.42 1.16 16 21 C -0.17 -4.21 8.43 37.16 0.31 -3.90 16 22 C -0.52 -13.43 7.80 -34.44 -0.27 -13.70 16 23 H 0.07 1.64 6.66 -52.49 -0.35 1.29 16 24 C 0.07 1.77 5.19 -17.82 -0.09 1.68 16 25 N -0.88 -24.76 12.08 55.43 0.67 -24.09 16 26 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 30 H 0.10 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.11 1.02 7.73 -52.48 -0.41 0.62 16 32 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 33 H 0.11 1.47 7.74 -51.93 -0.40 1.06 16 34 H 0.11 1.40 7.03 -51.93 -0.36 1.03 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.38 1.17 9.12 45.56 0.42 1.58 16 38 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.11 0.92 7.91 -51.93 -0.41 0.51 16 40 H 0.03 0.59 6.90 -51.93 -0.36 0.23 16 41 H 0.10 1.86 6.13 -51.93 -0.32 1.54 16 42 H 0.06 0.85 4.92 -51.93 -0.26 0.59 16 43 H 0.07 1.95 6.75 -51.93 -0.35 1.60 16 44 H 0.02 0.54 6.50 -51.93 -0.34 0.20 16 45 H 0.06 1.37 5.43 -51.93 -0.28 1.08 16 46 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -32.29 374.88 -8.54 -40.84 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.51 Total: 3.75 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -3.61 Total: -1.80 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.56 Total: -56.28 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.62 Total: -7.62 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.29 -8.54 -40.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338937524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.684 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds