Wall clock time and date at job start Tue Mar 31 2020 18:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50695 * 120.00679 * 2 1 4 4 N 1.46501 * 109.47249 * 126.60788 * 3 2 1 5 5 C 1.37833 * 127.14975 * 83.75442 * 4 3 2 6 6 C 1.46865 * 126.49829 * 359.97438 * 5 4 3 7 7 N 1.29424 * 125.88453 * 359.71224 * 6 5 4 8 8 O 1.41391 * 112.80059 * 179.68099 * 7 6 5 9 9 C 1.44195 * 107.61672 * 17.52508 * 8 7 6 10 10 H 1.08999 * 110.99625 * 92.66407 * 9 8 7 11 11 C 1.52996 * 110.96333 * 216.39982 * 9 8 7 12 12 O 1.42901 * 109.47315 * 287.40653 * 11 9 8 13 13 C 1.51686 * 125.89308 * 179.71452 * 6 5 4 14 14 N 1.31554 * 107.00980 * 179.72903 * 5 4 3 15 15 N 1.28521 * 109.86629 * 0.23112 * 14 5 4 16 16 C 1.31634 * 110.10026 * 359.97438 * 15 14 5 17 17 N 1.38136 * 126.33675 * 179.97438 * 16 15 14 18 18 C 1.46898 * 111.00224 * 251.92906 * 17 16 15 19 19 C 1.46897 * 111.00069 * 15.88987 * 17 16 15 20 20 H 1.08995 * 109.47453 * 54.99250 * 19 17 16 21 21 C 1.53004 * 109.46726 * 294.99710 * 19 17 16 22 22 C 1.50703 * 109.47349 * 174.99999 * 19 17 16 23 23 H 1.07992 * 119.99879 * 5.09190 * 22 19 17 24 24 C 1.37877 * 119.99691 * 185.09580 * 22 19 17 25 25 N 1.31509 * 120.00359 * 8.29886 * 24 22 19 26 26 Si 1.86796 * 119.99566 * 188.29453 * 24 22 19 27 27 H 1.48500 * 109.47072 * 94.98028 * 26 24 22 28 28 H 1.48498 * 109.47291 * 214.98030 * 26 24 22 29 29 H 1.48504 * 109.47641 * 334.97862 * 26 24 22 30 30 H 1.07999 * 120.00791 * 179.97438 * 1 2 3 31 31 H 1.08006 * 119.99625 * 359.97438 * 1 2 3 32 32 H 1.08006 * 119.99625 * 180.02562 * 2 1 3 33 33 H 1.09005 * 109.46962 * 6.61415 * 3 2 1 34 34 H 1.08998 * 109.47336 * 246.61149 * 3 2 1 35 35 H 1.08999 * 109.47403 * 47.41238 * 11 9 8 36 36 H 1.09005 * 109.47043 * 167.41086 * 11 9 8 37 37 H 0.96703 * 114.00459 * 180.02562 * 12 11 9 38 38 H 1.09001 * 110.79038 * 46.30672 * 13 6 5 39 39 H 1.09006 * 110.78820 * 282.85554 * 13 6 5 40 40 H 1.09001 * 109.46857 * 50.98371 * 18 17 16 41 41 H 1.09000 * 109.46899 * 170.97790 * 18 17 16 42 42 H 1.08994 * 109.47481 * 290.97956 * 18 17 16 43 43 H 1.08999 * 109.46910 * 183.52415 * 21 19 17 44 44 H 1.08996 * 109.47079 * 303.52278 * 21 19 17 45 45 H 1.09000 * 109.47046 * 63.52943 * 21 19 17 46 46 H 0.97001 * 119.99913 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0210 1.3160 1.1087 5 6 4.2885 0.7743 1.1194 6 6 4.9459 0.0680 0.0123 7 7 4.4315 -0.1620 -1.1528 8 8 5.3114 -0.8593 -2.0123 9 6 6.3401 -1.4535 -1.1951 10 1 6.0736 -2.4714 -0.9107 11 6 7.6924 -1.4240 -1.9101 12 8 7.6919 -2.3827 -2.9699 13 6 6.3449 -0.5178 0.0372 14 7 4.7997 1.0146 2.3075 15 7 3.9490 1.6545 3.0277 16 6 2.8433 1.8624 2.3443 17 7 1.7134 2.5168 2.7950 18 6 0.6136 1.5706 3.0254 19 6 2.0031 3.2929 4.0081 20 1 2.8333 3.9723 3.8152 21 6 2.3774 2.3404 5.1455 22 6 0.7839 4.0877 4.3992 23 1 -0.1406 3.9608 3.8556 24 6 0.8488 4.9768 5.4510 25 7 2.0077 5.2536 6.0075 26 14 -0.7095 5.7883 6.0853 27 1 -1.2383 5.0128 7.2360 28 1 -0.4035 7.1745 6.5215 29 1 -1.7256 5.8230 5.0029 30 1 -0.5401 -0.9352 -0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 1.3612 2.1301 0.1184 34 1 2.5985 1.4156 -0.9432 35 1 7.8650 -0.4290 -2.3203 36 1 8.4837 -1.6669 -1.2009 37 1 8.5202 -2.4193 -3.4676 38 1 6.5106 -1.0851 0.9531 39 1 7.0944 0.2657 -0.0748 40 1 0.9658 0.7491 3.6492 41 1 -0.2069 2.0827 3.5281 42 1 0.2658 1.1780 2.0699 43 1 2.5313 2.9110 6.0614 44 1 1.5726 1.6210 5.2966 45 1 3.2948 1.8108 4.8888 46 1 2.0533 5.8789 6.7477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338937524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:53 Heat of formation + Delta-G solvation = 82.216137 kcal Electronic energy + Delta-G solvation = -29626.454966 eV Core-core repulsion = 25555.859143 eV Total energy + Delta-G solvation = -4070.595824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.10278 -41.30741 -39.16755 -37.71058 -37.32871 -34.98599 -34.52305 -33.76147 -32.60608 -31.14653 -30.58092 -28.06829 -27.33372 -27.18973 -26.92792 -24.63095 -23.52082 -22.75649 -21.70371 -21.14682 -20.66692 -18.73426 -18.45268 -18.17394 -17.61814 -17.57336 -17.25187 -16.97316 -16.52838 -16.46098 -15.74537 -15.60520 -15.37847 -15.02377 -14.72879 -14.45457 -14.38150 -14.13015 -14.00956 -13.79755 -13.50506 -13.17478 -13.02959 -13.01010 -12.77914 -12.68040 -12.59220 -12.49123 -12.37132 -12.19090 -11.98603 -11.94855 -11.68081 -11.33683 -11.09497 -11.02117 -10.83778 -10.53970 -10.49689 -10.30206 -9.21575 -8.14253 -6.24743 -0.35010 0.72510 1.01651 1.36376 1.46579 1.47570 1.57784 1.71973 1.80280 2.42608 2.65944 2.88903 3.02092 3.13978 3.19018 3.52142 3.63536 3.75971 3.84934 3.96995 4.07579 4.09920 4.18470 4.19750 4.37742 4.46170 4.48047 4.49299 4.56082 4.65180 4.72989 4.75324 4.82795 4.92162 4.96986 5.08141 5.18479 5.27217 5.51286 5.52102 5.58011 5.61827 5.74162 5.97212 6.03667 6.15254 6.51515 6.83690 6.86496 7.42097 7.50122 8.95376 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.002790 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.583117 B =10032.989818 C =10932.752238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.191 4.191 3 C 0.135 3.865 4 N -0.454 5.454 5 C 0.198 3.802 6 C 0.175 3.825 7 N -0.291 5.291 8 O -0.195 6.195 9 C 0.040 3.960 10 H 0.099 0.901 11 C 0.085 3.915 12 O -0.591 6.591 13 C -0.120 4.120 14 N -0.255 5.255 15 N -0.341 5.341 16 C 0.393 3.607 17 N -0.458 5.458 18 C 0.034 3.966 19 C 0.239 3.761 20 H 0.008 0.992 21 C -0.158 4.158 22 C -0.525 4.525 23 H 0.074 0.926 24 C 0.016 3.984 25 N -0.919 5.919 26 Si 0.964 3.036 27 H -0.275 1.275 28 H -0.289 1.289 29 H -0.261 1.261 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.404 0.596 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.026 0.974 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.034 0.966 45 H 0.057 0.943 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.886 -14.622 -15.840 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.210 4.210 3 C 0.014 3.986 4 N -0.148 5.148 5 C -0.067 4.067 6 C -0.017 4.017 7 N -0.034 5.034 8 O -0.217 6.217 9 C -0.018 4.018 10 H 0.117 0.883 11 C 0.007 3.993 12 O -0.401 6.401 13 C -0.160 4.160 14 N -0.101 5.101 15 N -0.188 5.188 16 C 0.037 3.963 17 N -0.181 5.181 18 C -0.112 4.112 19 C 0.133 3.867 20 H 0.026 0.974 21 C -0.218 4.218 22 C -0.563 4.563 23 H 0.092 0.908 24 C -0.184 4.184 25 N -0.558 5.558 26 Si 0.789 3.211 27 H -0.201 1.201 28 H -0.215 1.215 29 H -0.185 1.185 30 H 0.143 0.857 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.255 0.745 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.045 0.955 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.279 -14.152 -15.655 21.753 hybrid contribution 0.114 0.289 0.500 0.589 sum 5.393 -13.863 -15.154 21.235 Atomic orbital electron populations 1.24227 0.94744 1.04117 0.94694 1.22827 0.96784 0.96572 1.04823 1.21291 0.91051 0.98978 0.87248 1.46471 1.13484 1.42775 1.12092 1.21148 0.84571 1.05335 0.95634 1.22412 0.95115 0.94078 0.90054 1.78638 1.14430 1.08725 1.01607 1.91299 1.38320 1.65848 1.26183 1.23956 0.90098 0.98136 0.89593 0.88327 1.22255 0.93618 0.93098 0.90348 1.86447 1.43841 1.61008 1.48784 1.22861 0.92089 1.00074 1.00972 1.74346 1.23667 1.12202 0.99876 1.74984 1.01176 1.18911 1.23754 1.23028 0.95416 0.94312 0.83548 1.59035 1.01793 1.21533 1.35774 1.22573 0.93027 0.93478 1.02120 1.19022 0.96270 0.89640 0.81767 0.97367 1.22330 0.99585 0.98712 1.01135 1.21312 0.96669 1.22889 1.15411 0.90799 1.25735 0.99037 0.96732 0.96905 1.70130 1.25694 1.35241 1.24687 0.85453 0.79564 0.77265 0.78809 1.20096 1.21500 1.18509 0.85674 0.86682 0.87729 0.87052 0.87079 0.91779 0.88157 0.74469 0.85014 0.85178 0.95519 0.88784 0.89397 0.93651 0.94694 0.92423 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 12.56 67.79 0.85 -1.61 16 2 C -0.19 -4.27 9.33 25.65 0.24 -4.03 16 3 C 0.13 3.53 5.54 85.63 0.47 4.01 16 4 N -0.45 -15.15 2.82 -521.68 -1.47 -16.62 16 5 C 0.20 6.45 7.94 135.75 1.08 7.53 16 6 C 0.17 4.51 7.25 45.49 0.33 4.84 16 7 N -0.29 -7.71 10.90 -42.64 -0.46 -8.17 16 8 O -0.20 -4.93 12.23 -38.32 -0.47 -5.40 16 9 C 0.04 0.70 4.09 31.18 0.13 0.83 16 10 H 0.10 1.66 8.14 -2.39 -0.02 1.65 16 11 C 0.09 0.98 6.74 71.98 0.48 1.47 16 12 O -0.59 -8.23 13.66 -148.98 -2.03 -10.27 16 13 C -0.12 -2.09 6.60 30.75 0.20 -1.88 16 14 N -0.26 -9.78 12.24 -51.23 -0.63 -10.41 16 15 N -0.34 -15.04 8.92 -58.18 -0.52 -15.55 16 16 C 0.39 15.97 6.60 260.24 1.72 17.69 16 17 N -0.46 -19.29 4.70 -711.29 -3.34 -22.63 16 18 C 0.03 1.20 8.55 127.69 1.09 2.29 16 19 C 0.24 12.14 1.96 44.17 0.09 12.23 16 20 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16 21 C -0.16 -7.90 8.43 71.98 0.61 -7.29 16 22 C -0.52 -27.49 7.80 25.60 0.20 -27.29 16 23 H 0.07 3.67 6.66 -2.91 -0.02 3.65 16 24 C 0.02 0.85 5.19 84.66 0.44 1.29 16 25 N -0.92 -53.15 12.08 21.45 0.26 -52.89 16 26 Si 0.96 42.05 29.54 68.60 2.03 44.07 16 27 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 28 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 29 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 30 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.12 1.84 7.73 -2.91 -0.02 1.82 16 32 H 0.10 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.11 2.85 7.74 -2.38 -0.02 2.83 16 34 H 0.11 2.80 7.03 -2.39 -0.02 2.78 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.40 1.51 9.12 -74.06 -0.68 0.84 16 38 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.13 1.80 7.91 -2.38 -0.02 1.78 16 40 H 0.03 0.95 6.90 -2.39 -0.02 0.93 16 41 H 0.09 3.40 6.13 -2.39 -0.01 3.38 16 42 H 0.09 2.47 4.92 -2.39 -0.01 2.46 16 43 H 0.04 2.49 6.75 -2.39 -0.02 2.47 16 44 H 0.03 1.60 6.50 -2.39 -0.02 1.59 16 45 H 0.06 2.86 5.43 -2.39 -0.01 2.85 16 46 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -72.00 374.88 1.64 -70.36 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.35 Total: 17.44 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 7.93 Total: 10.05 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -6.16 Total: -126.27 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -2.50 Total: -15.66 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -72.00 1.64 -70.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338937524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.577 kcal (2) G-P(sol) polarization free energy of solvation -71.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds