Wall clock time and date at job start Tue Mar 31 2020 18:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00140 * 2 1 4 4 N 1.46495 * 109.47263 * 124.99848 * 3 2 1 5 5 C 1.37837 * 127.15272 * 84.84299 * 4 3 2 6 6 C 1.46862 * 126.49700 * 0.03435 * 5 4 3 7 7 N 1.29426 * 125.88966 * 359.97257 * 6 5 4 8 8 O 1.41386 * 112.80926 * 180.31844 * 7 6 5 9 9 C 1.44192 * 107.61374 * 342.48144 * 8 7 6 10 10 H 1.09004 * 110.96742 * 267.30705 * 9 8 7 11 11 C 1.53001 * 110.96680 * 143.60008 * 9 8 7 12 12 O 1.42893 * 109.47271 * 66.44905 * 11 9 8 13 13 C 1.51687 * 125.89169 * 179.97438 * 6 5 4 14 14 N 1.31556 * 107.00969 * 180.29690 * 5 4 3 15 15 N 1.28519 * 109.86639 * 359.55844 * 14 5 4 16 16 C 1.31644 * 110.09980 * 0.45555 * 15 14 5 17 17 N 1.38130 * 126.33780 * 179.74666 * 16 15 14 18 18 C 1.46900 * 110.99826 * 71.41547 * 17 16 15 19 19 C 1.46897 * 111.00121 * 307.46591 * 17 16 15 20 20 H 1.09004 * 109.47454 * 59.99831 * 19 17 16 21 21 C 1.52995 * 109.47062 * 299.99763 * 19 17 16 22 22 C 1.50703 * 109.47369 * 179.97438 * 19 17 16 23 23 H 1.07996 * 119.99663 * 0.02562 * 22 19 17 24 24 C 1.37873 * 120.00202 * 179.97438 * 22 19 17 25 25 N 1.31517 * 119.99932 * 0.02562 * 24 22 19 26 26 Si 1.86802 * 119.99977 * 180.02562 * 24 22 19 27 27 H 1.48495 * 109.46899 * 60.00403 * 26 24 22 28 28 H 1.48509 * 109.46818 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.46903 * 299.99964 * 26 24 22 30 30 H 1.07999 * 120.00546 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99677 * 0.02562 * 1 2 3 32 32 H 1.07999 * 119.99442 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47038 * 4.99536 * 3 2 1 34 34 H 1.09009 * 109.46751 * 244.99652 * 3 2 1 35 35 H 1.09006 * 109.46884 * 306.44948 * 11 9 8 36 36 H 1.09007 * 109.47382 * 186.45642 * 11 9 8 37 37 H 0.96700 * 113.99829 * 180.02562 * 12 11 9 38 38 H 1.08999 * 110.79098 * 77.14752 * 13 6 5 39 39 H 1.08996 * 110.78927 * 313.68235 * 13 6 5 40 40 H 1.09001 * 109.47240 * 53.80366 * 18 17 16 41 41 H 1.09002 * 109.47459 * 173.80352 * 18 17 16 42 42 H 1.08998 * 109.47459 * 293.80668 * 18 17 16 43 43 H 1.09006 * 109.47534 * 59.99611 * 21 19 17 44 44 H 1.09002 * 109.47535 * 179.97438 * 21 19 17 45 45 H 1.09007 * 109.47438 * 299.99988 * 21 19 17 46 46 H 0.97004 * 119.99778 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.2683 0.8089 1.1737 6 6 4.9630 0.1115 0.0838 7 7 4.4825 -0.1227 -1.0949 8 8 5.3874 -0.8214 -1.9268 9 6 6.7014 -0.6925 -1.3472 10 1 7.2310 0.1625 -1.7675 11 6 7.5099 -1.9782 -1.5323 12 8 7.7777 -2.1767 -2.9218 13 6 6.3673 -0.4585 0.1453 14 7 4.7426 1.0478 2.3774 15 7 3.8679 1.6819 3.0735 16 6 2.7785 1.8784 2.3610 17 7 1.6300 2.5201 2.7817 18 6 1.8531 3.9661 2.9135 19 6 1.1378 1.9465 4.0413 20 1 1.9008 2.0543 4.8123 21 6 0.8243 0.4629 3.8380 22 6 -0.1129 2.6708 4.4684 23 1 -0.5033 3.4763 3.8642 24 6 -0.7593 2.3044 5.6298 25 7 -0.2841 1.3231 6.3653 26 14 -2.3099 3.2017 6.1586 27 1 -3.3492 3.0552 5.1081 28 1 -2.8081 2.6211 7.4315 29 1 -2.0055 4.6416 6.3564 30 1 -0.5401 -0.9352 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6214 1.4025 -0.9314 35 1 6.9402 -2.8242 -1.1476 36 1 8.4513 -1.8970 -0.9887 37 1 8.2876 -2.9756 -3.1139 38 1 6.3794 -1.3989 0.6965 39 1 7.0573 0.2596 0.5883 40 1 2.2548 4.3583 1.9792 41 1 0.9081 4.4605 3.1386 42 1 2.5619 4.1524 3.7203 43 1 1.7291 -0.0608 3.5293 44 1 0.4595 0.0371 4.7728 45 1 0.0612 0.3551 3.0670 46 1 -0.7387 1.0656 7.1826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338937525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:58 Heat of formation + Delta-G solvation = 97.818050 kcal Electronic energy + Delta-G solvation = -29732.394500 eV Core-core repulsion = 25662.475226 eV Total energy + Delta-G solvation = -4069.919274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.67788 -40.37259 -37.23717 -37.05088 -36.00077 -33.67063 -32.99694 -32.41397 -31.80854 -29.63259 -29.15375 -26.92185 -26.50336 -25.58519 -24.46374 -23.48887 -22.18518 -21.68033 -20.54153 -19.59308 -19.46736 -17.93294 -17.30374 -16.79747 -16.46081 -16.27834 -16.13570 -15.42742 -15.21378 -14.89236 -14.71993 -14.53336 -13.83147 -13.73979 -13.42820 -13.36277 -13.20518 -13.15994 -12.45014 -12.38756 -12.25750 -11.93108 -11.85139 -11.44173 -11.41803 -11.18520 -11.08421 -11.02586 -10.83873 -10.54748 -10.47343 -10.35929 -10.25706 -10.19883 -10.08387 -9.84405 -9.41767 -9.16730 -8.56900 -8.53847 -7.83172 -6.11479 -4.18615 0.80559 1.97162 2.33537 2.54067 2.81039 3.13834 3.26391 3.31751 3.33057 3.44085 3.88319 3.97201 4.27336 4.32308 4.52895 4.57927 4.65090 4.77049 4.93733 4.95413 4.98928 5.10959 5.20698 5.24801 5.33661 5.41518 5.56144 5.60084 5.68486 5.89536 5.96648 6.13749 6.20685 6.48478 6.61627 6.64116 6.72637 6.78354 6.92715 7.01022 7.03140 7.16186 7.29444 7.54953 7.66688 7.85443 8.12164 8.34812 8.81838 8.88424 9.46299 10.95297 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023243 B = 0.002822 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.356992 B = 9918.999585 C =10307.500072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.176 4.176 3 C 0.143 3.857 4 N -0.446 5.446 5 C 0.184 3.816 6 C 0.184 3.816 7 N -0.283 5.283 8 O -0.177 6.177 9 C 0.043 3.957 10 H 0.097 0.903 11 C 0.084 3.916 12 O -0.565 6.565 13 C -0.127 4.127 14 N -0.236 5.236 15 N -0.308 5.308 16 C 0.411 3.589 17 N -0.474 5.474 18 C 0.048 3.952 19 C 0.227 3.773 20 H 0.025 0.975 21 C -0.129 4.129 22 C -0.513 4.513 23 H 0.066 0.934 24 C 0.064 3.936 25 N -0.887 5.887 26 Si 0.901 3.099 27 H -0.276 1.276 28 H -0.287 1.287 29 H -0.276 1.276 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.383 0.617 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.044 0.956 41 H 0.093 0.907 42 H 0.038 0.962 43 H 0.001 0.999 44 H 0.092 0.908 45 H 0.034 0.966 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.741 -4.505 -14.814 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.195 4.195 3 C 0.021 3.979 4 N -0.138 5.138 5 C -0.079 4.079 6 C -0.008 4.008 7 N -0.026 5.026 8 O -0.197 6.197 9 C -0.016 4.016 10 H 0.115 0.885 11 C 0.005 3.995 12 O -0.371 6.371 13 C -0.167 4.167 14 N -0.084 5.084 15 N -0.155 5.155 16 C 0.056 3.944 17 N -0.201 5.201 18 C -0.099 4.099 19 C 0.123 3.877 20 H 0.042 0.958 21 C -0.188 4.188 22 C -0.551 4.551 23 H 0.084 0.916 24 C -0.139 4.139 25 N -0.525 5.525 26 Si 0.729 3.271 27 H -0.202 1.202 28 H -0.213 1.213 29 H -0.202 1.202 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.231 0.769 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.056 0.944 43 H 0.020 0.980 44 H 0.110 0.890 45 H 0.053 0.947 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.021 -4.093 -14.786 18.891 hybrid contribution -0.152 -0.279 0.417 0.524 sum 10.869 -4.372 -14.369 18.540 Atomic orbital electron populations 1.23916 0.95421 1.02569 0.96531 1.22797 0.96204 0.97280 1.03221 1.21028 0.91725 0.98412 0.86736 1.46525 1.12433 1.41641 1.13224 1.20776 0.85032 1.06907 0.95202 1.22331 0.94695 0.93875 0.89903 1.78675 1.14285 1.07649 1.02025 1.91340 1.14327 1.71254 1.42786 1.23720 0.86769 0.99408 0.91659 0.88514 1.22205 0.98074 0.95770 0.83488 1.86520 1.77913 1.48934 1.23725 1.22790 0.93009 1.04090 0.96828 1.74420 1.23528 1.11633 0.98844 1.74957 0.99215 1.17066 1.24260 1.22851 0.93152 0.96065 0.82331 1.59213 1.19296 1.03932 1.37678 1.22255 1.02871 0.85496 0.99300 1.19454 0.95289 0.92028 0.80923 0.95751 1.21806 0.97185 0.97083 1.02682 1.20977 1.09032 1.17957 1.07179 0.91580 1.24904 0.97674 0.95120 0.96179 1.69891 1.39949 1.27896 1.14743 0.86510 0.82925 0.79817 0.77864 1.20184 1.21264 1.20155 0.87951 0.87693 0.87352 0.87377 0.87980 0.92268 0.91350 0.76902 0.86961 0.86422 0.93711 0.88826 0.94376 0.98047 0.88993 0.94668 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 14.32 29.01 0.42 -1.54 16 2 C -0.18 -2.54 9.85 -36.03 -0.35 -2.90 16 3 C 0.14 2.08 6.11 -5.20 -0.03 2.05 16 4 N -0.45 -7.75 2.82 -116.24 -0.33 -8.07 16 5 C 0.18 3.09 7.94 -153.71 -1.22 1.86 16 6 C 0.18 2.52 7.25 -79.63 -0.58 1.94 16 7 N -0.28 -4.02 10.86 35.17 0.38 -3.64 16 8 O -0.18 -2.41 12.23 -12.02 -0.15 -2.56 16 9 C 0.04 0.42 4.09 -25.82 -0.11 0.32 16 10 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 11 C 0.08 0.60 6.74 37.16 0.25 0.85 16 12 O -0.57 -4.67 13.66 -35.89 -0.49 -5.16 16 13 C -0.13 -1.24 6.60 -26.49 -0.17 -1.42 16 14 N -0.24 -4.50 12.24 32.46 0.40 -4.10 16 15 N -0.31 -6.62 11.95 30.26 0.36 -6.26 16 16 C 0.41 8.30 5.06 -319.25 -1.62 6.68 16 17 N -0.47 -9.92 4.60 -176.17 -0.81 -10.73 16 18 C 0.05 0.90 9.14 60.06 0.55 1.44 16 19 C 0.23 5.60 1.95 -68.87 -0.13 5.46 16 20 H 0.02 0.69 7.98 -51.93 -0.41 0.28 16 21 C -0.13 -3.18 8.84 37.15 0.33 -2.85 16 22 C -0.51 -13.20 7.95 -34.44 -0.27 -13.47 16 23 H 0.07 1.64 6.40 -52.49 -0.34 1.30 16 24 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 25 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 26 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 30 H 0.10 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.10 1.35 7.84 -52.48 -0.41 0.94 16 32 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.11 1.52 7.75 -51.93 -0.40 1.12 16 34 H 0.10 1.37 6.96 -51.92 -0.36 1.00 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 37 H 0.38 1.22 9.12 45.56 0.42 1.64 16 38 H 0.11 0.94 7.91 -51.93 -0.41 0.53 16 39 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.09 1.73 6.32 -51.93 -0.33 1.40 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.00 0.01 7.23 -51.93 -0.38 -0.36 16 44 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 45 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -32.23 386.62 -8.12 -40.35 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.88 Total: 2.95 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -3.04 Total: 0.01 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.63 Total: -56.77 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.64 Total: -7.72 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.23 -8.12 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338937525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.164 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds