Wall clock time and date at job start Tue Mar 31 2020 18:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00140 * 2 1 4 4 N 1.46495 * 109.47263 * 124.99848 * 3 2 1 5 5 C 1.37837 * 127.15272 * 84.84299 * 4 3 2 6 6 C 1.46862 * 126.49700 * 0.03435 * 5 4 3 7 7 N 1.29426 * 125.88966 * 359.97257 * 6 5 4 8 8 O 1.41386 * 112.80926 * 180.31844 * 7 6 5 9 9 C 1.44192 * 107.61374 * 342.48144 * 8 7 6 10 10 H 1.09004 * 110.96742 * 267.30705 * 9 8 7 11 11 C 1.53001 * 110.96680 * 143.60008 * 9 8 7 12 12 O 1.42893 * 109.47271 * 66.44905 * 11 9 8 13 13 C 1.51687 * 125.89169 * 179.97438 * 6 5 4 14 14 N 1.31556 * 107.00969 * 180.29690 * 5 4 3 15 15 N 1.28519 * 109.86639 * 359.55844 * 14 5 4 16 16 C 1.31644 * 110.09980 * 0.45555 * 15 14 5 17 17 N 1.38130 * 126.33780 * 179.74666 * 16 15 14 18 18 C 1.46900 * 110.99826 * 71.41547 * 17 16 15 19 19 C 1.46897 * 111.00121 * 307.46591 * 17 16 15 20 20 H 1.09004 * 109.47454 * 59.99831 * 19 17 16 21 21 C 1.52995 * 109.47062 * 299.99763 * 19 17 16 22 22 C 1.50703 * 109.47369 * 179.97438 * 19 17 16 23 23 H 1.07996 * 119.99663 * 0.02562 * 22 19 17 24 24 C 1.37873 * 120.00202 * 179.97438 * 22 19 17 25 25 N 1.31517 * 119.99932 * 0.02562 * 24 22 19 26 26 Si 1.86802 * 119.99977 * 180.02562 * 24 22 19 27 27 H 1.48495 * 109.46899 * 60.00403 * 26 24 22 28 28 H 1.48509 * 109.46818 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.46903 * 299.99964 * 26 24 22 30 30 H 1.07999 * 120.00546 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99677 * 0.02562 * 1 2 3 32 32 H 1.07999 * 119.99442 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47038 * 4.99536 * 3 2 1 34 34 H 1.09009 * 109.46751 * 244.99652 * 3 2 1 35 35 H 1.09006 * 109.46884 * 306.44948 * 11 9 8 36 36 H 1.09007 * 109.47382 * 186.45642 * 11 9 8 37 37 H 0.96700 * 113.99829 * 180.02562 * 12 11 9 38 38 H 1.08999 * 110.79098 * 77.14752 * 13 6 5 39 39 H 1.08996 * 110.78927 * 313.68235 * 13 6 5 40 40 H 1.09001 * 109.47240 * 53.80366 * 18 17 16 41 41 H 1.09002 * 109.47459 * 173.80352 * 18 17 16 42 42 H 1.08998 * 109.47459 * 293.80668 * 18 17 16 43 43 H 1.09006 * 109.47534 * 59.99611 * 21 19 17 44 44 H 1.09002 * 109.47535 * 179.97438 * 21 19 17 45 45 H 1.09007 * 109.47438 * 299.99988 * 21 19 17 46 46 H 0.97004 * 119.99778 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.2683 0.8089 1.1737 6 6 4.9630 0.1115 0.0838 7 7 4.4825 -0.1227 -1.0949 8 8 5.3874 -0.8214 -1.9268 9 6 6.7014 -0.6925 -1.3472 10 1 7.2310 0.1625 -1.7675 11 6 7.5099 -1.9782 -1.5323 12 8 7.7777 -2.1767 -2.9218 13 6 6.3673 -0.4585 0.1453 14 7 4.7426 1.0478 2.3774 15 7 3.8679 1.6819 3.0735 16 6 2.7785 1.8784 2.3610 17 7 1.6300 2.5201 2.7817 18 6 1.8531 3.9661 2.9135 19 6 1.1378 1.9465 4.0413 20 1 1.9008 2.0543 4.8123 21 6 0.8243 0.4629 3.8380 22 6 -0.1129 2.6708 4.4684 23 1 -0.5033 3.4763 3.8642 24 6 -0.7593 2.3044 5.6298 25 7 -0.2841 1.3231 6.3653 26 14 -2.3099 3.2017 6.1586 27 1 -3.3492 3.0552 5.1081 28 1 -2.8081 2.6211 7.4315 29 1 -2.0055 4.6416 6.3564 30 1 -0.5401 -0.9352 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6214 1.4025 -0.9314 35 1 6.9402 -2.8242 -1.1476 36 1 8.4513 -1.8970 -0.9887 37 1 8.2876 -2.9756 -3.1139 38 1 6.3794 -1.3989 0.6965 39 1 7.0573 0.2596 0.5883 40 1 2.2548 4.3583 1.9792 41 1 0.9081 4.4605 3.1386 42 1 2.5619 4.1524 3.7203 43 1 1.7291 -0.0608 3.5293 44 1 0.4595 0.0371 4.7728 45 1 0.0612 0.3551 3.0670 46 1 -0.7387 1.0656 7.1826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338937525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:57 Heat of formation + Delta-G solvation = 75.854264 kcal Electronic energy + Delta-G solvation = -29733.346921 eV Core-core repulsion = 25662.475226 eV Total energy + Delta-G solvation = -4070.871695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.12089 -41.32037 -38.90145 -37.70061 -37.24068 -35.06224 -34.57604 -33.69870 -32.61781 -31.43927 -30.69672 -28.22033 -27.44324 -27.17003 -26.15725 -24.79204 -23.57890 -22.78834 -21.75598 -21.08834 -20.69643 -18.66556 -18.53454 -18.23020 -17.75627 -17.57454 -17.39073 -16.82619 -16.53307 -16.29722 -15.85698 -15.65826 -15.38950 -15.02030 -14.69619 -14.40761 -14.20262 -14.15952 -14.04930 -13.73070 -13.52970 -13.07996 -13.03643 -12.95394 -12.77834 -12.67522 -12.61194 -12.56358 -12.25201 -12.19378 -12.09199 -12.06157 -11.79941 -11.31772 -11.12346 -11.02564 -10.99839 -10.56172 -10.53892 -9.95500 -9.57368 -8.12501 -6.26400 -0.39254 0.71773 0.98197 1.38855 1.48489 1.49583 1.57033 1.72284 1.73708 2.42793 2.64721 2.88036 3.01239 3.14545 3.19164 3.52720 3.65752 3.80338 3.88745 3.95367 4.07864 4.09838 4.17852 4.18017 4.37443 4.47150 4.48968 4.54128 4.61398 4.71051 4.72481 4.75124 4.82080 4.88166 4.91102 4.92171 5.06692 5.31855 5.38620 5.54637 5.62353 5.65227 5.76989 5.93915 6.02075 6.13479 6.52244 6.83254 6.86767 7.38694 7.43486 8.94369 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023243 B = 0.002822 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.356992 B = 9918.999585 C =10307.500072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.192 4.192 3 C 0.142 3.858 4 N -0.443 5.443 5 C 0.203 3.797 6 C 0.172 3.828 7 N -0.289 5.289 8 O -0.193 6.193 9 C 0.039 3.961 10 H 0.102 0.898 11 C 0.085 3.915 12 O -0.590 6.590 13 C -0.120 4.120 14 N -0.256 5.256 15 N -0.343 5.343 16 C 0.394 3.606 17 N -0.467 5.467 18 C 0.049 3.951 19 C 0.238 3.762 20 H -0.020 1.020 21 C -0.109 4.109 22 C -0.520 4.520 23 H 0.076 0.924 24 C 0.015 3.985 25 N -0.921 5.921 26 Si 0.967 3.033 27 H -0.267 1.267 28 H -0.290 1.290 29 H -0.268 1.268 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.404 0.596 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.022 0.978 43 H -0.004 1.004 44 H 0.066 0.934 45 H 0.040 0.960 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.870 -4.451 -16.494 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.211 4.211 3 C 0.022 3.978 4 N -0.134 5.134 5 C -0.061 4.061 6 C -0.020 4.020 7 N -0.032 5.032 8 O -0.214 6.214 9 C -0.019 4.019 10 H 0.120 0.880 11 C 0.007 3.993 12 O -0.400 6.400 13 C -0.159 4.159 14 N -0.102 5.102 15 N -0.190 5.190 16 C 0.038 3.962 17 N -0.194 5.194 18 C -0.097 4.097 19 C 0.133 3.867 20 H -0.002 1.002 21 C -0.167 4.167 22 C -0.558 4.558 23 H 0.094 0.906 24 C -0.185 4.185 25 N -0.559 5.559 26 Si 0.792 3.208 27 H -0.192 1.192 28 H -0.216 1.216 29 H -0.193 1.193 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.255 0.745 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.041 0.959 43 H 0.015 0.985 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.171 -4.040 -16.496 20.328 hybrid contribution -0.090 -0.367 0.791 0.877 sum 11.081 -4.408 -15.704 19.719 Atomic orbital electron populations 1.24127 0.95126 1.03583 0.94695 1.22753 0.96609 0.96824 1.04881 1.21224 0.91632 0.98831 0.86140 1.46676 1.12973 1.40849 1.12947 1.21247 0.84606 1.05051 0.95197 1.22423 0.96404 0.94035 0.89146 1.78639 1.15184 1.07153 1.02221 1.91315 1.16062 1.70973 1.43079 1.24011 0.85381 1.01306 0.91168 0.88035 1.22277 0.99155 0.94374 0.83529 1.86454 1.78620 1.50564 1.24357 1.22871 0.90803 1.04984 0.97283 1.74339 1.23469 1.12678 0.99729 1.74859 1.00203 1.18230 1.25714 1.22687 0.92855 0.97297 0.83376 1.59103 1.20021 1.04859 1.35405 1.22303 1.02708 0.84402 1.00327 1.19092 0.93936 0.92169 0.81534 1.00211 1.21549 0.96803 0.97089 1.01302 1.21273 1.09132 1.18078 1.07357 0.90608 1.25739 1.00688 0.95783 0.96266 1.70043 1.41366 1.29417 1.15123 0.85475 0.79243 0.78786 0.77318 1.19221 1.21575 1.19309 0.86628 0.87012 0.88156 0.86732 0.86768 0.91919 0.88070 0.74518 0.85349 0.84746 0.90779 0.88626 0.95932 0.98531 0.91523 0.94090 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 14.32 67.78 0.97 -2.49 16 2 C -0.19 -5.34 9.85 25.65 0.25 -5.09 16 3 C 0.14 3.99 6.11 85.63 0.52 4.51 16 4 N -0.44 -15.18 2.82 -521.68 -1.47 -16.64 16 5 C 0.20 6.73 7.94 135.75 1.08 7.81 16 6 C 0.17 4.49 7.25 45.49 0.33 4.82 16 7 N -0.29 -7.85 10.86 -42.64 -0.46 -8.32 16 8 O -0.19 -4.96 12.23 -37.68 -0.46 -5.42 16 9 C 0.04 0.68 4.09 31.18 0.13 0.81 16 10 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 11 C 0.09 0.99 6.74 71.98 0.48 1.47 16 12 O -0.59 -8.40 13.66 -148.35 -2.03 -10.43 16 13 C -0.12 -2.08 6.60 30.75 0.20 -1.88 16 14 N -0.26 -9.78 12.24 -51.23 -0.63 -10.40 16 15 N -0.34 -15.10 11.95 -58.18 -0.70 -15.79 16 16 C 0.39 16.01 5.06 260.24 1.32 17.33 16 17 N -0.47 -19.62 4.60 -711.28 -3.27 -22.89 16 18 C 0.05 1.83 9.14 127.69 1.17 3.00 16 19 C 0.24 12.00 1.95 44.17 0.09 12.09 16 20 H -0.02 -1.16 7.98 -2.38 -0.02 -1.18 16 21 C -0.11 -5.49 8.84 71.98 0.64 -4.85 16 22 C -0.52 -26.81 7.95 25.60 0.20 -26.61 16 23 H 0.08 3.69 6.40 -2.91 -0.02 3.67 16 24 C 0.01 0.77 5.30 84.65 0.45 1.22 16 25 N -0.92 -52.11 11.32 21.45 0.24 -51.87 16 26 Si 0.97 41.52 29.54 68.60 2.03 43.55 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 28 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 29 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 30 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.11 2.66 7.84 -2.91 -0.02 2.64 16 32 H 0.10 2.95 8.06 -2.91 -0.02 2.93 16 33 H 0.11 3.05 7.75 -2.39 -0.02 3.03 16 34 H 0.11 2.90 6.96 -2.38 -0.02 2.89 16 35 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.40 1.64 9.12 -74.06 -0.68 0.96 16 38 H 0.13 1.83 7.91 -2.39 -0.02 1.81 16 39 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 2.28 8.10 -2.39 -0.02 2.26 16 41 H 0.10 3.46 6.32 -2.39 -0.02 3.44 16 42 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.00 -0.22 7.23 -2.38 -0.02 -0.24 16 44 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 45 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 46 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -70.66 386.62 1.42 -69.24 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.33 Total: 16.85 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 7.83 Total: 12.13 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -6.28 Total: -125.92 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -2.49 Total: -15.85 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -70.66 1.42 -69.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338937525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.094 kcal (2) G-P(sol) polarization free energy of solvation -70.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds