Wall clock time and date at job start Tue Mar 31 2020 18:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50705 * 119.99773 * 2 1 4 4 N 1.46499 * 109.46940 * 124.20128 * 3 2 1 5 5 C 1.37831 * 127.14976 * 92.47975 * 4 3 2 6 6 C 1.46869 * 126.49584 * 359.97438 * 5 4 3 7 7 N 1.29421 * 125.89000 * 359.74094 * 6 5 4 8 8 O 1.41393 * 112.80694 * 180.29697 * 7 6 5 9 9 C 1.44195 * 107.61103 * 342.47739 * 8 7 6 10 10 H 1.09000 * 110.99358 * 267.32842 * 9 8 7 11 11 C 1.53000 * 110.96352 * 143.60126 * 9 8 7 12 12 O 1.42896 * 109.47413 * 72.58411 * 11 9 8 13 13 C 1.51694 * 125.89095 * 179.71258 * 6 5 4 14 14 N 1.31553 * 107.00950 * 179.73137 * 5 4 3 15 15 N 1.28513 * 109.86629 * 0.26505 * 14 5 4 16 16 C 1.31644 * 110.10203 * 359.97438 * 15 14 5 17 17 N 1.38132 * 126.33581 * 180.02562 * 16 15 14 18 18 C 1.46895 * 111.00500 * 294.94883 * 17 16 15 19 19 C 1.46894 * 111.00049 * 58.90675 * 17 16 15 20 20 H 1.09008 * 109.47212 * 299.99888 * 19 17 16 21 21 C 1.53000 * 109.47580 * 59.99482 * 19 17 16 22 22 C 1.50700 * 109.47294 * 179.97438 * 19 17 16 23 23 H 1.07997 * 120.00067 * 359.97438 * 22 19 17 24 24 C 1.37877 * 119.99915 * 179.97438 * 22 19 17 25 25 N 1.31522 * 119.99896 * 179.97438 * 24 22 19 26 26 Si 1.86793 * 120.00275 * 0.02562 * 24 22 19 27 27 H 1.48501 * 109.47578 * 89.99820 * 26 24 22 28 28 H 1.48506 * 109.47241 * 209.99788 * 26 24 22 29 29 H 1.48503 * 109.47356 * 329.99591 * 26 24 22 30 30 H 1.07997 * 119.99952 * 359.97438 * 1 2 3 31 31 H 1.07995 * 119.99394 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.00214 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.46682 * 4.19854 * 3 2 1 34 34 H 1.09003 * 109.46563 * 244.20489 * 3 2 1 35 35 H 1.09002 * 109.47226 * 312.58558 * 11 9 8 36 36 H 1.09003 * 109.46908 * 192.58815 * 11 9 8 37 37 H 0.96705 * 114.00432 * 179.97438 * 12 11 9 38 38 H 1.08999 * 110.78359 * 77.16853 * 13 6 5 39 39 H 1.09000 * 110.78788 * 313.71213 * 13 6 5 40 40 H 1.09004 * 109.47222 * 65.51982 * 18 17 16 41 41 H 1.08994 * 109.47773 * 185.52662 * 18 17 16 42 42 H 1.09011 * 109.46888 * 305.52840 * 18 17 16 43 43 H 1.09003 * 109.47440 * 180.02562 * 21 19 17 44 44 H 1.09001 * 109.47374 * 300.00619 * 21 19 17 45 45 H 1.08997 * 109.46956 * 60.00101 * 21 19 17 46 46 H 0.96997 * 119.99798 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9801 1.3399 1.1424 5 6 4.3017 0.9490 1.1614 6 6 5.0701 0.4120 0.0308 7 7 4.6211 0.2165 -1.1671 8 8 5.5981 -0.3183 -2.0382 9 6 6.8890 -0.0939 -1.4362 10 1 7.3256 0.8416 -1.7859 11 6 7.8307 -1.2690 -1.7065 12 8 8.2360 -1.2493 -3.0766 13 6 6.5272 -0.0085 0.0657 14 7 4.7458 1.1530 2.3827 15 7 3.8046 1.6314 3.1155 16 6 2.7024 1.7627 2.4076 17 7 1.4905 2.2452 2.8620 18 6 0.9158 1.3528 3.8775 19 6 1.6293 3.6125 3.3805 20 1 2.3395 3.6172 4.2074 21 6 2.1368 4.5312 2.2672 22 6 0.2898 4.1043 3.8653 23 1 -0.5779 3.4652 3.7949 24 6 0.1721 5.3702 4.3988 25 7 -0.9970 5.7996 4.8215 26 14 1.6727 6.4760 4.5200 27 1 1.7964 7.2805 3.2780 28 1 1.5253 7.3844 5.6855 29 1 2.8893 5.6423 4.6930 30 1 -0.5400 0.9353 0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3575 2.1322 0.0752 34 1 2.6325 1.3962 -0.9253 35 1 7.3142 -2.2050 -1.4939 36 1 8.7091 -1.1853 -1.0665 37 1 8.8361 -1.9676 -3.3197 38 1 6.6378 -0.9806 0.5462 39 1 7.1351 0.7440 0.5680 40 1 1.5521 1.3522 4.7626 41 1 -0.0807 1.7027 4.1467 42 1 0.8499 0.3412 3.4768 43 1 2.2402 5.5457 2.6521 44 1 3.1056 4.1757 1.9161 45 1 1.4267 4.5265 1.4403 46 1 -1.0799 6.6903 5.1964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338937526.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:03 Heat of formation + Delta-G solvation = 106.107760 kcal Electronic energy + Delta-G solvation = -29738.698061 eV Core-core repulsion = 25669.138256 eV Total energy + Delta-G solvation = -4069.559805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.82997 -40.45825 -37.46600 -37.13977 -36.12679 -33.79012 -32.94212 -32.54034 -31.87782 -30.52839 -29.39090 -27.01112 -26.57623 -25.65599 -24.60880 -23.62208 -22.28295 -21.77357 -20.64770 -19.72323 -19.56813 -18.05585 -17.38739 -17.07146 -16.60776 -16.45657 -16.28365 -15.59033 -15.24154 -15.05180 -14.94627 -14.58385 -13.96576 -13.78506 -13.52274 -13.47622 -13.40844 -13.24401 -12.73797 -12.47290 -12.32993 -12.30344 -11.98582 -11.82789 -11.62161 -11.58153 -11.23141 -11.16295 -10.86602 -10.81260 -10.60359 -10.52391 -10.28467 -10.22128 -9.99972 -9.66870 -9.59308 -9.32801 -8.71996 -8.65404 -8.07344 -6.20244 -4.21608 0.69578 1.83451 2.16878 2.41641 2.69984 2.98978 3.19790 3.32906 3.34935 3.36693 3.78690 3.87874 4.24515 4.27955 4.29834 4.53696 4.58614 4.70656 4.79474 4.87511 4.91760 5.00945 5.11234 5.13823 5.23280 5.32771 5.44753 5.50445 5.61673 5.77516 5.87043 6.02268 6.12322 6.14563 6.22146 6.32727 6.48386 6.54753 6.57111 6.66409 6.74741 6.93112 6.99359 7.10783 7.31748 7.52374 7.80836 8.42219 8.70263 8.82194 9.39440 10.91420 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.003106 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.018757 B = 9012.196069 C = 9767.096453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.179 4.179 3 C 0.137 3.863 4 N -0.443 5.443 5 C 0.188 3.812 6 C 0.182 3.818 7 N -0.282 5.282 8 O -0.177 6.177 9 C 0.043 3.957 10 H 0.099 0.901 11 C 0.084 3.916 12 O -0.566 6.566 13 C -0.127 4.127 14 N -0.236 5.236 15 N -0.310 5.310 16 C 0.405 3.595 17 N -0.462 5.462 18 C 0.051 3.949 19 C 0.195 3.805 20 H 0.024 0.976 21 C -0.148 4.148 22 C -0.514 4.514 23 H 0.088 0.912 24 C 0.079 3.921 25 N -0.891 5.891 26 Si 0.878 3.122 27 H -0.277 1.277 28 H -0.293 1.293 29 H -0.264 1.264 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.384 0.616 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.038 0.962 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.021 0.979 45 H 0.060 0.940 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.572 -14.651 -11.937 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.197 4.197 3 C 0.015 3.985 4 N -0.134 5.134 5 C -0.075 4.075 6 C -0.010 4.010 7 N -0.025 5.025 8 O -0.198 6.198 9 C -0.016 4.016 10 H 0.117 0.883 11 C 0.005 3.995 12 O -0.372 6.372 13 C -0.167 4.167 14 N -0.084 5.084 15 N -0.158 5.158 16 C 0.049 3.951 17 N -0.189 5.189 18 C -0.096 4.096 19 C 0.089 3.911 20 H 0.041 0.959 21 C -0.205 4.205 22 C -0.552 4.552 23 H 0.106 0.894 24 C -0.125 4.125 25 N -0.529 5.529 26 Si 0.708 3.292 27 H -0.204 1.204 28 H -0.220 1.220 29 H -0.189 1.189 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.232 0.768 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.057 0.943 41 H 0.118 0.882 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.040 0.960 45 H 0.079 0.921 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.774 -13.930 -12.010 22.393 hybrid contribution 1.473 0.176 0.063 1.484 sum 14.247 -13.754 -11.947 23.128 Atomic orbital electron populations 1.23993 0.95436 1.02741 0.96382 1.22849 0.96251 0.97243 1.03399 1.21144 0.92357 0.98380 0.86614 1.46529 1.09632 1.46233 1.11019 1.20810 0.82849 1.09287 0.94565 1.22328 0.94455 0.94505 0.89696 1.78646 1.13291 1.09661 1.00882 1.91335 1.12177 1.77938 1.38304 1.23720 0.86553 1.00248 0.91081 0.88341 1.22184 0.96499 0.96896 0.83937 1.86517 1.69314 1.55078 1.26280 1.22781 0.91615 1.05533 0.96739 1.74419 1.23171 1.12701 0.98143 1.74932 0.97210 1.18895 1.24722 1.22823 0.93735 0.96346 0.82169 1.58914 1.14387 1.05229 1.40327 1.22274 1.01771 0.93639 0.91946 1.19887 0.98705 0.80483 0.92036 0.95880 1.22211 0.98189 0.99654 1.00469 1.20812 0.92985 1.00766 1.40609 0.89413 1.24820 0.95641 0.97471 0.94543 1.69849 1.23110 1.18829 1.41071 0.86985 0.84165 0.81039 0.76991 1.20444 1.22042 1.18908 0.87386 0.87913 0.87358 0.87063 0.87415 0.92193 0.91302 0.76822 0.86958 0.86367 0.94278 0.88238 0.93287 0.93016 0.95988 0.92098 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 14.32 29.01 0.42 -1.25 16 2 C -0.18 -2.24 9.85 -36.03 -0.35 -2.59 16 3 C 0.14 1.91 6.29 -5.19 -0.03 1.87 16 4 N -0.44 -7.27 2.82 -116.24 -0.33 -7.60 16 5 C 0.19 2.97 7.94 -153.71 -1.22 1.75 16 6 C 0.18 2.35 7.24 -79.63 -0.58 1.77 16 7 N -0.28 -3.81 10.66 35.17 0.38 -3.44 16 8 O -0.18 -2.31 12.23 -11.37 -0.14 -2.45 16 9 C 0.04 0.40 4.09 -25.83 -0.11 0.29 16 10 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 11 C 0.08 0.56 6.74 37.16 0.25 0.81 16 12 O -0.57 -4.40 13.66 -35.23 -0.48 -4.88 16 13 C -0.13 -1.15 6.60 -26.49 -0.17 -1.32 16 14 N -0.24 -4.23 12.24 32.46 0.40 -3.83 16 15 N -0.31 -6.26 12.11 30.26 0.37 -5.89 16 16 C 0.40 7.71 5.00 -319.26 -1.60 6.11 16 17 N -0.46 -9.26 4.64 -176.17 -0.82 -10.08 16 18 C 0.05 0.94 9.15 60.06 0.55 1.48 16 19 C 0.19 4.50 1.58 -68.87 -0.11 4.39 16 20 H 0.02 0.59 7.13 -51.92 -0.37 0.22 16 21 C -0.15 -3.25 8.54 37.16 0.32 -2.93 16 22 C -0.51 -13.43 8.52 -34.44 -0.29 -13.72 16 23 H 0.09 2.43 6.64 -52.49 -0.35 2.08 16 24 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 25 N -0.89 -25.85 13.96 55.43 0.77 -25.08 16 26 Si 0.88 21.35 24.37 -169.99 -4.14 17.21 16 27 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 30 H 0.11 1.24 7.84 -52.49 -0.41 0.83 16 31 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.11 1.59 7.79 -51.93 -0.40 1.19 16 34 H 0.11 1.43 6.54 -51.93 -0.34 1.09 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.38 1.03 9.12 45.56 0.42 1.45 16 38 H 0.11 0.81 7.91 -51.93 -0.41 0.40 16 39 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 1.91 6.29 -51.93 -0.33 1.58 16 42 H 0.05 0.79 8.11 -51.92 -0.42 0.37 16 43 H 0.05 1.18 3.27 -51.93 -0.17 1.01 16 44 H 0.02 0.45 7.22 -51.93 -0.38 0.08 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -32.76 379.64 -7.03 -39.78 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.73 Total: 1.80 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -3.03 Total: -1.28 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.77 Total: -55.91 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.62 Total: -7.32 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.14 Total: 17.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.76 -7.03 -39.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338937526.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.892 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds