Wall clock time and date at job start Tue Mar 31 2020 18:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50705 * 119.99773 * 2 1 4 4 N 1.46499 * 109.46940 * 124.20128 * 3 2 1 5 5 C 1.37831 * 127.14976 * 92.47975 * 4 3 2 6 6 C 1.46869 * 126.49584 * 359.97438 * 5 4 3 7 7 N 1.29421 * 125.89000 * 359.74094 * 6 5 4 8 8 O 1.41393 * 112.80694 * 180.29697 * 7 6 5 9 9 C 1.44195 * 107.61103 * 342.47739 * 8 7 6 10 10 H 1.09000 * 110.99358 * 267.32842 * 9 8 7 11 11 C 1.53000 * 110.96352 * 143.60126 * 9 8 7 12 12 O 1.42896 * 109.47413 * 72.58411 * 11 9 8 13 13 C 1.51694 * 125.89095 * 179.71258 * 6 5 4 14 14 N 1.31553 * 107.00950 * 179.73137 * 5 4 3 15 15 N 1.28513 * 109.86629 * 0.26505 * 14 5 4 16 16 C 1.31644 * 110.10203 * 359.97438 * 15 14 5 17 17 N 1.38132 * 126.33581 * 180.02562 * 16 15 14 18 18 C 1.46895 * 111.00500 * 294.94883 * 17 16 15 19 19 C 1.46894 * 111.00049 * 58.90675 * 17 16 15 20 20 H 1.09008 * 109.47212 * 299.99888 * 19 17 16 21 21 C 1.53000 * 109.47580 * 59.99482 * 19 17 16 22 22 C 1.50700 * 109.47294 * 179.97438 * 19 17 16 23 23 H 1.07997 * 120.00067 * 359.97438 * 22 19 17 24 24 C 1.37877 * 119.99915 * 179.97438 * 22 19 17 25 25 N 1.31522 * 119.99896 * 179.97438 * 24 22 19 26 26 Si 1.86793 * 120.00275 * 0.02562 * 24 22 19 27 27 H 1.48501 * 109.47578 * 89.99820 * 26 24 22 28 28 H 1.48506 * 109.47241 * 209.99788 * 26 24 22 29 29 H 1.48503 * 109.47356 * 329.99591 * 26 24 22 30 30 H 1.07997 * 119.99952 * 359.97438 * 1 2 3 31 31 H 1.07995 * 119.99394 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.00214 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.46682 * 4.19854 * 3 2 1 34 34 H 1.09003 * 109.46563 * 244.20489 * 3 2 1 35 35 H 1.09002 * 109.47226 * 312.58558 * 11 9 8 36 36 H 1.09003 * 109.46908 * 192.58815 * 11 9 8 37 37 H 0.96705 * 114.00432 * 179.97438 * 12 11 9 38 38 H 1.08999 * 110.78359 * 77.16853 * 13 6 5 39 39 H 1.09000 * 110.78788 * 313.71213 * 13 6 5 40 40 H 1.09004 * 109.47222 * 65.51982 * 18 17 16 41 41 H 1.08994 * 109.47773 * 185.52662 * 18 17 16 42 42 H 1.09011 * 109.46888 * 305.52840 * 18 17 16 43 43 H 1.09003 * 109.47440 * 180.02562 * 21 19 17 44 44 H 1.09001 * 109.47374 * 300.00619 * 21 19 17 45 45 H 1.08997 * 109.46956 * 60.00101 * 21 19 17 46 46 H 0.96997 * 119.99798 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9801 1.3399 1.1424 5 6 4.3017 0.9490 1.1614 6 6 5.0701 0.4120 0.0308 7 7 4.6211 0.2165 -1.1671 8 8 5.5981 -0.3183 -2.0382 9 6 6.8890 -0.0939 -1.4362 10 1 7.3256 0.8416 -1.7859 11 6 7.8307 -1.2690 -1.7065 12 8 8.2360 -1.2493 -3.0766 13 6 6.5272 -0.0085 0.0657 14 7 4.7458 1.1530 2.3827 15 7 3.8046 1.6314 3.1155 16 6 2.7024 1.7627 2.4076 17 7 1.4905 2.2452 2.8620 18 6 0.9158 1.3528 3.8775 19 6 1.6293 3.6125 3.3805 20 1 2.3395 3.6172 4.2074 21 6 2.1368 4.5312 2.2672 22 6 0.2898 4.1043 3.8653 23 1 -0.5779 3.4652 3.7949 24 6 0.1721 5.3702 4.3988 25 7 -0.9970 5.7996 4.8215 26 14 1.6727 6.4760 4.5200 27 1 1.7964 7.2805 3.2780 28 1 1.5253 7.3844 5.6855 29 1 2.8893 5.6423 4.6930 30 1 -0.5400 0.9353 0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3575 2.1322 0.0752 34 1 2.6325 1.3962 -0.9253 35 1 7.3142 -2.2050 -1.4939 36 1 8.7091 -1.1853 -1.0665 37 1 8.8361 -1.9676 -3.3197 38 1 6.6378 -0.9806 0.5462 39 1 7.1351 0.7440 0.5680 40 1 1.5521 1.3522 4.7626 41 1 -0.0807 1.7027 4.1467 42 1 0.8499 0.3412 3.4768 43 1 2.2402 5.5457 2.6521 44 1 3.1056 4.1757 1.9161 45 1 1.4267 4.5265 1.4403 46 1 -1.0799 6.6903 5.1964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338937526.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:02 Heat of formation + Delta-G solvation = 82.306716 kcal Electronic energy + Delta-G solvation = -29739.730152 eV Core-core repulsion = 25669.138256 eV Total energy + Delta-G solvation = -4070.591896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.18586 -41.33957 -39.09572 -37.71268 -37.26787 -35.06409 -34.59021 -33.72699 -32.62464 -32.35862 -30.75848 -28.21723 -27.48764 -27.16265 -26.27439 -24.83093 -23.63089 -22.79651 -21.76910 -21.06658 -20.76660 -19.01897 -18.70189 -18.26628 -17.89208 -17.57501 -17.37961 -16.88655 -16.71431 -16.41836 -15.77076 -15.64821 -15.51047 -15.18818 -14.73301 -14.56911 -14.42937 -14.17036 -14.16439 -14.06287 -13.65480 -13.57007 -13.10752 -13.01813 -12.85450 -12.74924 -12.61800 -12.60445 -12.52876 -12.21536 -12.12935 -11.84022 -11.58071 -11.34373 -11.32280 -11.05115 -11.02638 -10.78397 -10.56144 -9.96926 -9.72679 -8.32336 -6.36109 -0.42356 0.69808 0.88462 1.25857 1.35027 1.36541 1.42092 1.67657 1.70761 2.27330 2.59757 2.78283 2.95264 3.02377 3.11427 3.51465 3.64837 3.76754 3.81101 3.94967 4.05403 4.08555 4.10355 4.16233 4.36420 4.37129 4.39868 4.47161 4.49459 4.51018 4.52963 4.67569 4.71519 4.75281 4.81664 4.82744 4.92101 5.05261 5.16885 5.31838 5.43522 5.54647 5.66040 5.75055 5.99375 6.07932 6.47502 6.69331 6.86654 7.27429 7.33188 8.82333 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.003106 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.018757 B = 9012.196069 C = 9767.096453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.191 4.191 3 C 0.136 3.864 4 N -0.439 5.439 5 C 0.207 3.793 6 C 0.172 3.828 7 N -0.291 5.291 8 O -0.193 6.193 9 C 0.038 3.962 10 H 0.097 0.903 11 C 0.086 3.914 12 O -0.592 6.592 13 C -0.118 4.118 14 N -0.251 5.251 15 N -0.338 5.338 16 C 0.389 3.611 17 N -0.458 5.458 18 C 0.055 3.945 19 C 0.202 3.798 20 H 0.003 0.997 21 C -0.140 4.140 22 C -0.505 4.505 23 H 0.065 0.935 24 C 0.032 3.968 25 N -0.933 5.933 26 Si 0.928 3.072 27 H -0.265 1.265 28 H -0.293 1.293 29 H -0.262 1.262 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.404 0.596 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.029 0.971 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.030 0.970 45 H 0.067 0.933 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.566 -15.919 -13.331 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.210 4.210 3 C 0.015 3.985 4 N -0.130 5.130 5 C -0.057 4.057 6 C -0.020 4.020 7 N -0.034 5.034 8 O -0.215 6.215 9 C -0.020 4.020 10 H 0.115 0.885 11 C 0.007 3.993 12 O -0.402 6.402 13 C -0.158 4.158 14 N -0.098 5.098 15 N -0.185 5.185 16 C 0.032 3.968 17 N -0.184 5.184 18 C -0.092 4.092 19 C 0.095 3.905 20 H 0.021 0.979 21 C -0.197 4.197 22 C -0.544 4.544 23 H 0.083 0.917 24 C -0.168 4.168 25 N -0.572 5.572 26 Si 0.756 3.244 27 H -0.191 1.191 28 H -0.220 1.220 29 H -0.187 1.187 30 H 0.123 0.877 31 H 0.142 0.858 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.256 0.744 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.048 0.952 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.789 -15.226 -13.426 25.116 hybrid contribution 0.863 0.427 0.367 1.030 sum 15.652 -14.799 -13.059 25.190 Atomic orbital electron populations 1.24176 0.95068 1.03644 0.94301 1.22763 0.96567 0.96461 1.05236 1.21286 0.92147 0.99142 0.85893 1.46680 1.10189 1.45507 1.10644 1.21243 0.82489 1.07258 0.94740 1.22439 0.96142 0.94593 0.88826 1.78615 1.14340 1.09209 1.01191 1.91313 1.13693 1.77792 1.38680 1.23993 0.85500 1.01674 0.90875 0.88506 1.22259 0.97105 0.95776 0.84122 1.86453 1.70188 1.56550 1.26996 1.22860 0.89033 1.06995 0.96901 1.74358 1.22806 1.13821 0.98841 1.74845 0.97937 1.19716 1.25999 1.22564 0.93170 0.97956 0.83085 1.58772 1.15268 1.04156 1.40254 1.22234 1.00650 0.94621 0.91649 1.19597 0.96265 0.82649 0.91971 0.97906 1.22077 0.98807 0.98778 1.00055 1.20965 0.93646 1.00194 1.39556 0.91708 1.25459 0.97745 0.98953 0.94620 1.69956 1.24998 1.19466 1.42792 0.86169 0.81278 0.79567 0.77375 1.19089 1.22046 1.18719 0.87688 0.85796 0.87205 0.87611 0.86815 0.91587 0.88089 0.74450 0.84736 0.84962 0.95185 0.89473 0.90818 0.93732 0.95049 0.91432 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 14.32 67.77 0.97 -1.81 16 2 C -0.19 -4.50 9.85 25.64 0.25 -4.25 16 3 C 0.14 3.64 6.29 85.63 0.54 4.18 16 4 N -0.44 -13.95 2.82 -521.67 -1.47 -15.42 16 5 C 0.21 6.25 7.94 135.76 1.08 7.33 16 6 C 0.17 4.10 7.24 45.49 0.33 4.43 16 7 N -0.29 -7.39 10.66 -42.63 -0.45 -7.85 16 8 O -0.19 -4.68 12.23 -38.32 -0.47 -5.15 16 9 C 0.04 0.61 4.09 31.18 0.13 0.74 16 10 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 11 C 0.09 0.87 6.74 71.98 0.48 1.36 16 12 O -0.59 -7.75 13.66 -148.98 -2.03 -9.78 16 13 C -0.12 -1.81 6.60 30.75 0.20 -1.60 16 14 N -0.25 -8.70 12.24 -51.23 -0.63 -9.32 16 15 N -0.34 -13.44 12.11 -58.18 -0.70 -14.14 16 16 C 0.39 14.55 5.00 260.25 1.30 15.85 16 17 N -0.46 -18.30 4.64 -711.28 -3.30 -21.60 16 18 C 0.06 2.05 9.15 127.69 1.17 3.22 16 19 C 0.20 9.35 1.58 44.17 0.07 9.42 16 20 H 0.00 0.17 7.13 -2.38 -0.02 0.15 16 21 C -0.14 -6.02 8.54 71.98 0.62 -5.40 16 22 C -0.51 -26.81 8.52 25.60 0.22 -26.59 16 23 H 0.06 3.68 6.64 -2.91 -0.02 3.66 16 24 C 0.03 1.75 5.45 84.65 0.46 2.21 16 25 N -0.93 -55.05 13.96 21.45 0.30 -54.75 16 26 Si 0.93 43.99 24.37 68.60 1.67 45.66 16 27 H -0.26 -11.94 6.87 99.48 0.68 -11.25 16 28 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 29 H -0.26 -12.28 6.53 99.48 0.65 -11.63 16 30 H 0.10 2.26 7.84 -2.91 -0.02 2.24 16 31 H 0.12 2.05 8.06 -2.91 -0.02 2.02 16 32 H 0.11 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.11 2.94 7.79 -2.39 -0.02 2.92 16 34 H 0.11 2.89 6.54 -2.39 -0.02 2.87 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.10 0.39 8.14 -2.39 -0.02 0.38 16 37 H 0.40 1.16 9.12 -74.05 -0.68 0.49 16 38 H 0.13 1.47 7.91 -2.39 -0.02 1.45 16 39 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.09 3.42 6.29 -2.39 -0.02 3.41 16 42 H 0.07 2.33 8.11 -2.38 -0.02 2.31 16 43 H 0.04 1.97 3.27 -2.39 -0.01 1.97 16 44 H 0.03 1.27 7.22 -2.39 -0.02 1.25 16 45 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 46 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -70.72 379.64 0.99 -69.73 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.26 Total: 13.56 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 7.82 Total: 9.07 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -6.25 Total: -123.08 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -2.50 Total: -14.94 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.67 Total: 45.66 kcal Total: -70.72 0.99 -69.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338937526.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.036 kcal (2) G-P(sol) polarization free energy of solvation -70.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds