Wall clock time and date at job start Tue Mar 31 2020 19:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46500 * 109.47449 * 2 1 4 4 C 1.35312 * 125.87133 * 125.28980 * 3 2 1 5 5 C 1.35357 * 106.17419 * 180.18818 * 4 3 2 6 6 C 1.50694 * 126.74984 * 179.84963 * 5 4 3 7 7 N 1.46510 * 109.46864 * 94.71868 * 6 5 4 8 8 C 1.34773 * 120.00138 * 180.02562 * 7 6 5 9 9 O 1.21353 * 119.99790 * 359.97438 * 8 7 6 10 10 C 1.49446 * 119.99950 * 179.72427 * 8 7 6 11 11 O 1.21342 * 120.00210 * 353.88062 * 10 8 7 12 12 N 1.34777 * 119.99654 * 173.88198 * 10 8 7 13 13 C 1.46922 * 120.63629 * 4.25985 * 12 10 8 14 14 C 1.52761 * 109.01114 * 233.58594 * 13 12 10 15 15 C 1.53043 * 109.38303 * 305.58746 * 14 13 12 16 16 C 1.50692 * 109.44915 * 181.25208 * 15 14 13 17 17 H 1.08003 * 120.00090 * 239.93738 * 16 15 14 18 18 C 1.37885 * 120.00190 * 59.93671 * 16 15 14 19 19 N 1.31509 * 119.99825 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99912 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47651 * 60.00158 * 20 18 16 22 22 H 1.48499 * 109.46933 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47505 * 299.99816 * 20 18 16 24 24 C 1.53044 * 109.53750 * 61.23846 * 15 14 13 25 25 C 1.46932 * 120.62887 * 184.54156 * 12 10 8 26 26 N 1.33773 * 106.49516 * 359.59695 * 5 4 3 27 27 N 1.28632 * 108.88714 * 0.25662 * 26 5 4 28 28 H 1.09007 * 109.47242 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47436 * 299.99887 * 1 2 3 30 30 H 1.08998 * 109.47511 * 60.00047 * 1 2 3 31 31 H 1.08998 * 109.47436 * 240.00113 * 2 1 3 32 32 H 1.08998 * 109.47511 * 119.99953 * 2 1 3 33 33 H 1.07995 * 126.91585 * 0.04704 * 4 3 2 34 34 H 1.09004 * 109.47406 * 334.72117 * 6 5 4 35 35 H 1.08994 * 109.47536 * 214.71398 * 6 5 4 36 36 H 0.96997 * 119.99799 * 359.97438 * 7 6 5 37 37 H 1.09008 * 109.58216 * 353.41800 * 13 12 10 38 38 H 1.08996 * 109.59323 * 113.84382 * 13 12 10 39 39 H 1.08991 * 109.56875 * 185.54628 * 14 13 12 40 40 H 1.09004 * 109.35792 * 65.49427 * 14 13 12 41 41 H 1.09000 * 109.45559 * 301.21872 * 15 14 13 42 42 H 0.97002 * 120.00091 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.49342 * 178.68905 * 24 15 14 44 44 H 1.08999 * 109.52295 * 58.60397 * 24 15 14 45 45 H 1.08997 * 109.58250 * 246.15870 * 25 12 10 46 46 H 1.09006 * 109.58276 * 6.43516 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8799 1.9175 0.8950 5 6 3.0530 3.2080 0.5251 6 6 3.9215 4.2329 1.2078 7 7 5.2336 4.2724 0.5571 8 6 6.1813 5.1210 1.0022 9 8 5.9476 5.8528 1.9416 10 6 7.5217 5.1568 0.3424 11 8 7.7956 4.3477 -0.5194 12 7 8.4264 6.0879 0.7046 13 6 8.1456 7.0147 1.8095 14 6 8.3435 8.4479 1.3194 15 6 9.7442 8.5906 0.7195 16 6 9.9523 10.0117 0.2633 17 1 10.1657 10.2199 -0.7747 18 6 9.8703 11.0462 1.1712 19 7 9.6100 10.7927 2.4351 20 14 10.1290 12.8076 0.6059 21 1 9.1144 13.1517 -0.4224 22 1 9.9900 13.7250 1.7654 23 1 11.4888 12.9467 0.0256 24 6 9.8879 7.6453 -0.4756 25 6 9.7098 6.1994 -0.0020 26 7 2.3057 3.3930 -0.5690 27 7 1.7053 2.2918 -0.8542 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3357 1.4174 1.7366 34 1 4.0443 3.9643 2.2570 35 1 3.4510 5.2135 1.1364 36 1 5.4205 3.6872 -0.1936 37 1 7.1164 6.8832 2.1440 38 1 8.8285 6.8164 2.6355 39 1 8.2339 9.1381 2.1557 40 1 7.5970 8.6759 0.5586 41 1 10.4896 8.3384 1.4737 42 1 9.5519 11.5205 3.0738 43 1 10.8777 7.7644 -0.9166 44 1 9.1272 7.8808 -1.2198 45 1 10.5229 5.9331 0.6732 46 1 9.7135 5.5283 -0.8610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350211252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:25 Heat of formation + Delta-G solvation = 21.946052 kcal Electronic energy + Delta-G solvation = -28428.880911 eV Core-core repulsion = 24355.671580 eV Total energy + Delta-G solvation = -4073.209331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.33810 -41.99296 -39.86805 -38.59156 -36.96958 -35.97972 -35.20240 -33.01937 -32.51915 -31.74084 -31.73194 -28.76913 -27.90685 -25.74340 -25.57086 -24.12989 -23.58273 -22.86778 -21.89802 -21.69623 -20.51068 -18.88947 -18.40056 -18.25003 -17.97705 -17.46272 -17.10955 -16.79129 -16.45564 -16.11387 -15.98266 -15.58324 -15.29316 -15.25795 -14.75096 -14.63758 -14.49739 -14.34608 -14.02211 -13.83308 -13.66559 -13.38051 -13.18619 -13.08422 -12.79265 -12.72859 -12.52538 -12.37979 -12.28888 -12.12168 -11.90185 -11.83212 -11.48679 -11.13887 -11.05456 -10.99378 -10.47664 -10.39876 -10.39221 -9.87699 -9.67425 -8.05769 -6.19577 0.31992 0.55545 1.00925 1.43034 1.43960 1.45540 1.51368 1.62134 2.12188 2.45148 2.57439 3.16046 3.20365 3.27936 3.61667 3.82218 3.98050 4.08494 4.13300 4.28852 4.30162 4.34264 4.37515 4.51855 4.53175 4.58461 4.73134 4.74675 4.77736 4.82500 4.91795 4.96218 5.01579 5.15339 5.21518 5.23768 5.35355 5.41701 5.54149 5.64395 5.64616 5.96525 6.00243 6.13276 6.30763 6.40308 6.68566 6.89654 6.92302 7.42885 7.47764 8.97606 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025209 B = 0.002054 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.460188 B =13628.684193 C =14063.689204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.100 3.900 3 N -0.285 5.285 4 C -0.001 4.001 5 C -0.065 4.065 6 C 0.210 3.790 7 N -0.681 5.681 8 C 0.518 3.482 9 O -0.517 6.517 10 C 0.501 3.499 11 O -0.553 6.553 12 N -0.567 5.567 13 C 0.056 3.944 14 C -0.110 4.110 15 C 0.042 3.958 16 C -0.536 4.536 17 H 0.049 0.951 18 C 0.015 3.985 19 N -0.912 5.912 20 Si 0.951 3.049 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.114 4.114 25 C 0.111 3.889 26 N -0.295 5.295 27 N -0.113 5.113 28 H 0.109 0.891 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.146 0.854 33 H 0.240 0.760 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.416 0.584 37 H 0.154 0.846 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.020 0.980 41 H 0.004 0.996 42 H 0.261 0.739 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.985 -26.356 0.744 30.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.078 5.078 4 C -0.154 4.154 5 C -0.204 4.204 6 C 0.086 3.914 7 N -0.333 5.333 8 C 0.300 3.700 9 O -0.396 6.396 10 C 0.284 3.716 11 O -0.433 6.433 12 N -0.299 5.299 13 C -0.064 4.064 14 C -0.149 4.149 15 C 0.024 3.976 16 C -0.574 4.574 17 H 0.068 0.932 18 C -0.184 4.184 19 N -0.552 5.552 20 Si 0.777 3.223 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.197 1.197 24 C -0.152 4.152 25 C -0.010 4.010 26 N -0.162 5.162 27 N -0.092 5.092 28 H 0.128 0.872 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.130 0.870 32 H 0.164 0.836 33 H 0.256 0.744 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.253 0.747 37 H 0.170 0.830 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.039 0.961 41 H 0.022 0.978 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.097 0.903 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.903 -25.891 -0.147 30.921 hybrid contribution 0.944 0.961 0.194 1.361 sum -15.959 -24.930 0.047 29.601 Atomic orbital electron populations 1.22073 0.92649 1.05016 1.02608 1.22647 0.97039 0.74183 1.07962 1.47967 1.29230 1.13008 1.17595 1.24137 0.97491 0.94139 0.99676 1.21919 1.04531 0.95921 0.98000 1.19580 0.78598 0.96945 0.96264 1.45749 1.12562 1.39269 1.35745 1.19970 0.85529 0.80778 0.83771 1.90326 1.79957 1.40190 1.29091 1.20139 0.85908 0.82095 0.83471 1.90686 1.79573 1.39901 1.33181 1.48237 1.16667 1.31476 1.33477 1.23291 1.07444 0.88589 0.87090 1.21665 0.97844 0.94683 1.00716 1.18659 0.93188 0.93076 0.92711 1.21529 1.48252 0.92962 0.94683 0.93235 1.25690 0.94980 1.02668 0.95082 1.69963 1.49567 1.32914 1.02707 0.85726 0.78696 0.80197 0.77682 1.20148 1.20872 1.19694 1.21863 1.01076 0.93512 0.98745 1.21841 0.83979 0.97758 0.97438 1.75095 1.09300 1.17284 1.14510 1.78257 1.21681 0.93256 1.16018 0.87217 0.92378 0.92929 0.87038 0.83566 0.74382 0.86210 0.90168 0.74721 0.83029 0.92208 0.90536 0.96110 0.97777 0.92956 0.90992 0.93856 0.90268 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.60 10.04 71.98 0.72 0.12 16 2 C 0.10 0.25 7.17 86.38 0.62 0.87 16 3 N -0.28 -3.48 3.44 -347.75 -1.20 -4.68 16 4 C 0.00 -0.01 11.50 83.49 0.96 0.95 16 5 C -0.06 -1.17 6.62 41.60 0.28 -0.89 16 6 C 0.21 3.87 6.23 85.63 0.53 4.41 16 7 N -0.68 -15.59 5.54 -468.14 -2.59 -18.18 16 8 C 0.52 15.44 7.81 87.27 0.68 16.12 16 9 O -0.52 -17.16 13.01 -3.26 -0.04 -17.20 16 10 C 0.50 17.20 7.76 87.27 0.68 17.88 16 11 O -0.55 -19.83 15.92 -3.22 -0.05 -19.88 16 12 N -0.57 -21.09 2.98 -821.32 -2.45 -23.53 16 13 C 0.06 2.25 6.24 86.22 0.54 2.79 16 14 C -0.11 -5.35 5.14 30.53 0.16 -5.19 16 15 C 0.04 2.12 2.07 -11.51 -0.02 2.09 16 16 C -0.54 -29.82 8.56 25.60 0.22 -29.60 16 17 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 18 C 0.01 0.82 5.30 84.66 0.45 1.27 16 19 N -0.91 -52.45 11.30 21.45 0.24 -52.21 16 20 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 24 C -0.11 -4.75 5.30 30.67 0.16 -4.59 16 25 C 0.11 4.01 6.42 86.36 0.55 4.57 16 26 N -0.30 -7.40 12.41 -48.60 -0.60 -8.00 16 27 N -0.11 -2.44 12.91 37.02 0.48 -1.96 16 28 H 0.11 -0.16 8.14 -2.38 -0.02 -0.18 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.05 0.46 8.12 -2.39 -0.02 0.44 16 31 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.15 -0.73 8.07 -2.39 -0.02 -0.74 16 33 H 0.24 0.07 8.06 -2.91 -0.02 0.05 16 34 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.42 9.24 7.95 -92.71 -0.74 8.51 16 37 H 0.15 5.96 3.71 -85.47 -0.32 5.64 16 38 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.08 4.15 6.03 -2.39 -0.01 4.14 16 40 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 46 H 0.09 3.13 7.03 -2.38 -0.02 3.11 16 Total: -1.00 -74.86 379.12 2.31 -72.55 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -0.03 Total: 16.14 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 6.53 Total: 10.80 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -6.12 Total: -108.57 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.09 Total: -37.08 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -74.86 2.31 -72.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350211252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.494 kcal (2) G-P(sol) polarization free energy of solvation -74.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds