Wall clock time and date at job start Tue Mar 31 2020 20:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47401 * 2 1 4 4 C 1.46497 * 119.99708 * 274.94663 * 3 2 1 5 5 C 1.50694 * 109.47204 * 263.11075 * 4 3 2 6 6 H 1.07998 * 119.99872 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00396 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99540 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00380 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47460 * 59.99249 * 9 7 5 11 11 H 1.48501 * 109.47156 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47018 * 299.99655 * 9 7 5 13 13 C 1.34776 * 120.00239 * 94.94077 * 3 2 1 14 14 O 1.21366 * 119.99507 * 3.69705 * 13 3 2 15 15 C 1.49341 * 120.00041 * 183.69134 * 13 3 2 16 16 O 1.21378 * 120.00117 * 354.27377 * 15 13 3 17 17 N 1.34778 * 119.99730 * 174.26684 * 15 13 3 18 18 C 1.39930 * 119.99656 * 180.02562 * 17 15 13 19 19 C 1.40698 * 125.94854 * 0.02562 * 18 17 15 20 20 C 1.34466 * 107.75550 * 179.97438 * 19 18 17 21 21 N 1.35563 * 107.98986 * 0.12995 * 20 19 18 22 22 N 1.31537 * 125.94270 * 179.97438 * 18 17 15 23 23 C 1.46662 * 123.57467 * 179.72841 * 21 20 19 24 24 C 1.53388 * 108.23603 * 343.52253 * 23 21 20 25 25 N 1.47050 * 109.75627 * 49.87150 * 24 23 21 26 26 C 1.46897 * 110.98790 * 53.27139 * 25 24 23 27 27 C 1.47360 * 111.08332 * 289.26757 * 25 24 23 28 28 H 1.09000 * 109.47018 * 299.99791 * 1 2 3 29 29 H 1.08993 * 109.47264 * 60.00215 * 1 2 3 30 30 H 1.09002 * 109.47285 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46891 * 239.99734 * 2 1 3 32 32 H 1.09006 * 109.47195 * 120.00042 * 2 1 3 33 33 H 1.09002 * 109.47724 * 23.11363 * 4 3 2 34 34 H 1.09000 * 109.47207 * 143.11038 * 4 3 2 35 35 H 0.97005 * 120.00430 * 180.02562 * 8 7 5 36 36 H 0.96995 * 120.00261 * 0.02562 * 17 15 13 37 37 H 1.08001 * 126.12456 * 359.93548 * 19 18 17 38 38 H 1.09003 * 109.71127 * 103.20383 * 23 21 20 39 39 H 1.09001 * 109.71279 * 223.79291 * 23 21 20 40 40 H 1.08994 * 109.43122 * 169.95307 * 24 23 21 41 41 H 1.09004 * 109.42685 * 289.85035 * 24 23 21 42 42 H 1.08992 * 109.47267 * 292.00026 * 26 25 24 43 43 H 1.09005 * 109.46659 * 51.99515 * 26 25 24 44 44 H 1.08997 * 109.47490 * 171.98943 * 26 25 24 45 45 H 1.09000 * 109.74835 * 290.25556 * 27 25 24 46 46 H 1.09001 * 109.74550 * 169.58189 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1594 2.1082 -1.2640 5 6 3.5887 2.0257 -1.7342 6 1 4.3190 1.4854 -1.1501 7 6 3.9643 2.6400 -2.9101 8 7 3.0750 3.2975 -3.6216 9 14 5.7359 2.5371 -3.4932 10 1 6.1082 1.1141 -3.6970 11 1 5.8789 3.2742 -4.7745 12 1 6.6291 3.1409 -2.4719 13 6 2.3378 1.9830 1.1628 14 8 2.2850 1.3600 2.2030 15 6 2.7568 3.4164 1.1713 16 8 2.9102 4.0101 0.1238 17 7 2.9644 4.0509 2.3421 18 6 3.3565 5.3941 2.3500 19 6 3.5691 6.1992 1.2159 20 6 3.9334 7.4211 1.6429 21 7 3.9570 7.4012 2.9982 22 7 3.5896 6.1241 3.4192 23 6 4.3178 8.5610 3.8202 24 6 5.0311 9.5813 2.9240 25 7 4.2377 9.8153 1.7082 26 6 2.8559 10.1834 2.0444 27 6 4.2699 8.6399 0.8199 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5042 1.6644 -2.0136 34 1 1.8857 3.1527 -1.1149 35 1 3.3390 3.7294 -4.4490 36 1 2.8421 3.5764 3.1792 37 1 3.4599 5.8908 0.1867 38 1 3.4171 9.0078 4.2411 39 1 4.9836 8.2486 4.6247 40 1 5.1492 10.5197 3.4658 41 1 6.0126 9.1966 2.6468 42 1 2.3491 9.3262 2.4874 43 1 2.8628 11.0091 2.7560 44 1 2.3307 10.4883 1.1393 45 1 5.2654 8.5305 0.3898 46 1 3.5358 8.7603 0.0232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352184574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:45 Heat of formation + Delta-G solvation = 52.237858 kcal Electronic energy + Delta-G solvation = -29807.157040 eV Core-core repulsion = 25735.261261 eV Total energy + Delta-G solvation = -4071.895779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.71140 -40.17792 -38.43266 -37.57138 -35.74342 -34.22308 -32.74948 -32.65840 -30.68917 -30.50674 -28.57939 -27.34942 -27.08639 -25.37405 -24.37080 -23.06207 -22.42600 -22.13827 -20.31110 -19.64279 -18.66882 -17.10631 -16.91448 -16.58639 -16.43250 -16.00779 -15.75212 -15.42079 -15.22512 -14.98623 -14.81947 -14.40226 -14.22056 -13.81618 -13.57684 -13.31363 -12.97707 -12.91580 -12.80223 -12.43904 -12.36293 -12.12930 -12.03566 -11.91757 -11.69264 -11.66959 -11.50496 -10.95759 -10.83409 -10.60574 -10.55229 -10.50380 -10.39011 -9.97835 -9.68144 -8.86901 -8.74740 -8.58155 -8.27764 -8.05078 -7.81984 -6.02868 -4.05660 1.69854 2.09706 2.16793 2.98453 3.06726 3.33067 3.36847 3.40869 3.56242 3.93219 4.03004 4.23154 4.43920 4.49394 4.55541 4.74910 4.97933 4.99125 5.06864 5.22600 5.32585 5.33368 5.39646 5.44163 5.52369 5.60750 5.64430 5.68144 5.78831 5.84819 5.87552 6.15834 6.26900 6.38970 6.50314 6.54311 6.55489 6.68646 6.95833 7.12580 7.24800 7.41936 7.44239 7.86071 7.96814 8.10583 8.19406 8.34311 8.63835 8.95780 9.57405 11.05754 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.003802 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.437761 B = 7363.653093 C = 9027.703036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.556 5.556 4 C 0.221 3.779 5 C -0.520 4.520 6 H 0.053 0.947 7 C 0.071 3.929 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.513 3.487 14 O -0.560 6.560 15 C 0.500 3.500 16 O -0.428 6.428 17 N -0.623 5.623 18 C 0.308 3.692 19 C -0.243 4.243 20 C 0.046 3.954 21 N -0.372 5.372 22 N -0.321 5.321 23 C 0.104 3.896 24 C 0.039 3.961 25 N -0.534 5.534 26 C 0.015 3.985 27 C 0.117 3.883 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.263 0.737 36 H 0.420 0.580 37 H 0.180 0.820 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.033 0.967 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 10.833 11.209 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.014 4.014 3 N -0.286 5.286 4 C 0.103 3.897 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.131 4.131 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.295 3.705 14 O -0.441 6.441 15 C 0.281 3.719 16 O -0.294 6.294 17 N -0.275 5.275 18 C 0.052 3.948 19 C -0.273 4.273 20 C -0.081 4.081 21 N -0.159 5.159 22 N -0.151 5.151 23 C -0.019 4.019 24 C -0.091 4.091 25 N -0.256 5.256 26 C -0.133 4.133 27 C -0.013 4.013 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.257 0.743 37 H 0.197 0.803 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.052 0.948 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.123 0.877 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.420 11.512 11.759 16.461 hybrid contribution 0.605 -1.059 -0.276 1.250 sum 0.185 10.453 11.482 15.529 Atomic orbital electron populations 1.22114 0.96180 1.01660 1.02260 1.21458 0.93864 0.82847 1.03278 1.48293 1.58714 1.13487 1.08148 1.20103 0.97713 0.94023 0.77889 1.21195 0.94194 1.33711 1.06808 0.92831 1.24782 0.97199 0.94797 0.96356 1.69907 1.33657 1.34189 1.15017 0.86655 0.85301 0.78069 0.77951 1.20387 1.21187 1.20275 1.19506 0.79653 0.86795 0.84591 1.90664 1.55461 1.65869 1.32102 1.20418 0.79748 0.88692 0.83090 1.90855 1.42928 1.66134 1.29448 1.42400 1.67103 1.07306 1.10741 1.19204 0.97592 0.85630 0.92368 1.21561 1.13141 0.91337 1.01309 1.21805 1.02460 0.98538 0.85280 1.48010 1.55541 1.08237 1.04064 1.77222 1.28175 0.89980 1.19759 1.22372 1.01216 0.83527 0.94766 1.22695 0.97727 0.98229 0.90413 1.62485 1.12987 1.34655 1.15432 1.22508 0.88412 1.00223 1.02166 1.21202 1.04265 0.81779 0.94010 0.92829 0.92124 0.91937 0.89853 0.90303 0.94919 0.90764 0.92777 0.74309 0.80277 0.90075 0.88773 0.87816 0.89278 0.94833 0.91050 0.90560 0.87723 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 10.24 37.16 0.38 -2.06 16 2 C 0.11 1.91 6.18 -4.04 -0.02 1.88 16 3 N -0.56 -11.80 2.48 -175.61 -0.43 -12.24 16 4 C 0.22 5.42 4.79 -5.20 -0.02 5.39 16 5 C -0.52 -14.04 8.31 -34.44 -0.29 -14.33 16 6 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 7 C 0.07 1.95 5.46 -17.82 -0.10 1.86 16 8 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.51 10.82 7.67 -11.64 -0.09 10.73 16 14 O -0.56 -11.82 15.98 5.48 0.09 -11.73 16 15 C 0.50 10.41 7.73 -11.64 -0.09 10.32 16 16 O -0.43 -9.98 9.49 5.47 0.05 -9.93 16 17 N -0.62 -11.40 5.43 -11.47 -0.06 -11.46 16 18 C 0.31 5.66 8.11 -154.24 -1.25 4.41 16 19 C -0.24 -4.40 9.56 -39.99 -0.38 -4.78 16 20 C 0.05 0.68 5.94 -82.20 -0.49 0.19 16 21 N -0.37 -5.29 3.81 -56.83 -0.22 -5.50 16 22 N -0.32 -5.49 12.66 31.50 0.40 -5.09 16 23 C 0.10 0.99 6.57 -3.75 -0.02 0.96 16 24 C 0.04 0.30 5.96 -3.54 -0.02 0.28 16 25 N -0.53 -4.96 5.23 -243.49 -1.27 -6.23 16 26 C 0.01 0.13 8.69 60.06 0.52 0.65 16 27 C 0.12 1.31 6.17 -4.64 -0.03 1.28 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 32 H 0.08 1.36 7.24 -51.93 -0.38 0.98 16 33 H 0.03 0.82 8.02 -51.93 -0.42 0.41 16 34 H 0.07 1.96 5.41 -51.93 -0.28 1.68 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 36 H 0.42 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.18 3.64 5.92 -52.49 -0.31 3.33 16 38 H 0.08 0.69 7.16 -51.93 -0.37 0.32 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.70 8.07 -51.93 -0.42 0.29 16 42 H 0.03 0.35 6.18 -51.93 -0.32 0.03 16 43 H 0.07 0.47 8.10 -51.93 -0.42 0.04 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.11 1.14 8.03 -51.93 -0.42 0.72 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -32.28 374.22 -8.60 -40.88 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.60 Total: 6.96 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: -1.91 Total: 16.78 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: -0.85 Total: -65.01 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.14 Total: -21.66 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.28 -8.60 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352184574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.117 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds