Wall clock time and date at job start Tue Mar 31 2020 20:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47401 * 2 1 4 4 C 1.46497 * 119.99708 * 274.94663 * 3 2 1 5 5 C 1.50694 * 109.47204 * 263.11075 * 4 3 2 6 6 H 1.07998 * 119.99872 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00396 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99540 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00380 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47460 * 59.99249 * 9 7 5 11 11 H 1.48501 * 109.47156 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47018 * 299.99655 * 9 7 5 13 13 C 1.34776 * 120.00239 * 94.94077 * 3 2 1 14 14 O 1.21366 * 119.99507 * 3.69705 * 13 3 2 15 15 C 1.49341 * 120.00041 * 183.69134 * 13 3 2 16 16 O 1.21378 * 120.00117 * 354.27377 * 15 13 3 17 17 N 1.34778 * 119.99730 * 174.26684 * 15 13 3 18 18 C 1.39930 * 119.99656 * 180.02562 * 17 15 13 19 19 C 1.40698 * 125.94854 * 0.02562 * 18 17 15 20 20 C 1.34466 * 107.75550 * 179.97438 * 19 18 17 21 21 N 1.35563 * 107.98986 * 0.12995 * 20 19 18 22 22 N 1.31537 * 125.94270 * 179.97438 * 18 17 15 23 23 C 1.46662 * 123.57467 * 179.72841 * 21 20 19 24 24 C 1.53388 * 108.23603 * 343.52253 * 23 21 20 25 25 N 1.47050 * 109.75627 * 49.87150 * 24 23 21 26 26 C 1.46897 * 110.98790 * 53.27139 * 25 24 23 27 27 C 1.47360 * 111.08332 * 289.26757 * 25 24 23 28 28 H 1.09000 * 109.47018 * 299.99791 * 1 2 3 29 29 H 1.08993 * 109.47264 * 60.00215 * 1 2 3 30 30 H 1.09002 * 109.47285 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46891 * 239.99734 * 2 1 3 32 32 H 1.09006 * 109.47195 * 120.00042 * 2 1 3 33 33 H 1.09002 * 109.47724 * 23.11363 * 4 3 2 34 34 H 1.09000 * 109.47207 * 143.11038 * 4 3 2 35 35 H 0.97005 * 120.00430 * 180.02562 * 8 7 5 36 36 H 0.96995 * 120.00261 * 0.02562 * 17 15 13 37 37 H 1.08001 * 126.12456 * 359.93548 * 19 18 17 38 38 H 1.09003 * 109.71127 * 103.20383 * 23 21 20 39 39 H 1.09001 * 109.71279 * 223.79291 * 23 21 20 40 40 H 1.08994 * 109.43122 * 169.95307 * 24 23 21 41 41 H 1.09004 * 109.42685 * 289.85035 * 24 23 21 42 42 H 1.08992 * 109.47267 * 292.00026 * 26 25 24 43 43 H 1.09005 * 109.46659 * 51.99515 * 26 25 24 44 44 H 1.08997 * 109.47490 * 171.98943 * 26 25 24 45 45 H 1.09000 * 109.74835 * 290.25556 * 27 25 24 46 46 H 1.09001 * 109.74550 * 169.58189 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1594 2.1082 -1.2640 5 6 3.5887 2.0257 -1.7342 6 1 4.3190 1.4854 -1.1501 7 6 3.9643 2.6400 -2.9101 8 7 3.0750 3.2975 -3.6216 9 14 5.7359 2.5371 -3.4932 10 1 6.1082 1.1141 -3.6970 11 1 5.8789 3.2742 -4.7745 12 1 6.6291 3.1409 -2.4719 13 6 2.3378 1.9830 1.1628 14 8 2.2850 1.3600 2.2030 15 6 2.7568 3.4164 1.1713 16 8 2.9102 4.0101 0.1238 17 7 2.9644 4.0509 2.3421 18 6 3.3565 5.3941 2.3500 19 6 3.5691 6.1992 1.2159 20 6 3.9334 7.4211 1.6429 21 7 3.9570 7.4012 2.9982 22 7 3.5896 6.1241 3.4192 23 6 4.3178 8.5610 3.8202 24 6 5.0311 9.5813 2.9240 25 7 4.2377 9.8153 1.7082 26 6 2.8559 10.1834 2.0444 27 6 4.2699 8.6399 0.8199 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5042 1.6644 -2.0136 34 1 1.8857 3.1527 -1.1149 35 1 3.3390 3.7294 -4.4490 36 1 2.8421 3.5764 3.1792 37 1 3.4599 5.8908 0.1867 38 1 3.4171 9.0078 4.2411 39 1 4.9836 8.2486 4.6247 40 1 5.1492 10.5197 3.4658 41 1 6.0126 9.1966 2.6468 42 1 2.3491 9.3262 2.4874 43 1 2.8628 11.0091 2.7560 44 1 2.3307 10.4883 1.1393 45 1 5.2654 8.5305 0.3898 46 1 3.5358 8.7603 0.0232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352184574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:44 Heat of formation + Delta-G solvation = 29.113929 kcal Electronic energy + Delta-G solvation = -29808.159769 eV Core-core repulsion = 25735.261261 eV Total energy + Delta-G solvation = -4072.898508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.93419 -41.77326 -39.81339 -38.78244 -37.41468 -35.69668 -34.67460 -33.74781 -32.04636 -31.85085 -29.62443 -29.02888 -28.24061 -26.77484 -25.38938 -24.99844 -23.76031 -23.25623 -21.71997 -20.97999 -19.95745 -18.80758 -18.35526 -18.16778 -17.88318 -17.17861 -17.12450 -16.83389 -16.59556 -16.25938 -16.05100 -15.86849 -15.57935 -15.16855 -14.98205 -14.59716 -14.48386 -14.27878 -14.05354 -13.75221 -13.58271 -13.43137 -13.20640 -13.15133 -12.95566 -12.73588 -12.69844 -12.58453 -12.43534 -12.29511 -12.04598 -11.88581 -11.79697 -11.76672 -11.63899 -10.66056 -10.18189 -9.87064 -9.66032 -9.62927 -9.32816 -8.12645 -6.21854 0.18239 0.77706 0.84701 1.40410 1.42522 1.49161 1.61914 1.64770 2.29093 2.41339 2.56951 2.81996 3.20712 3.23720 3.40565 3.49471 3.88189 3.99088 4.15193 4.19429 4.32042 4.34537 4.41838 4.46418 4.51768 4.52635 4.59830 4.70467 4.72944 4.76415 4.82060 4.90181 4.97770 5.00007 5.03167 5.26321 5.40360 5.54511 5.56726 5.73595 5.77671 5.81754 5.89630 6.00239 6.12713 6.26544 6.58472 6.76013 6.81661 7.01519 7.44388 8.95283 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.003802 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.437761 B = 7363.653093 C = 9027.703036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.561 5.561 4 C 0.240 3.760 5 C -0.529 4.529 6 H 0.043 0.957 7 C 0.027 3.973 8 N -0.916 5.916 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.512 3.488 14 O -0.559 6.559 15 C 0.499 3.501 16 O -0.459 6.459 17 N -0.611 5.611 18 C 0.285 3.715 19 C -0.282 4.282 20 C 0.066 3.934 21 N -0.361 5.361 22 N -0.332 5.332 23 C 0.093 3.907 24 C 0.042 3.958 25 N -0.531 5.531 26 C 0.016 3.984 27 C 0.117 3.883 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.023 0.977 34 H 0.054 0.946 35 H 0.265 0.735 36 H 0.427 0.573 37 H 0.151 0.849 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.141 0.859 41 H 0.089 0.911 42 H 0.012 0.988 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.115 0.885 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.172 12.215 12.400 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.020 4.020 3 N -0.291 5.291 4 C 0.120 3.880 5 C -0.567 4.567 6 H 0.061 0.939 7 C -0.173 4.173 8 N -0.556 5.556 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.208 1.208 13 C 0.293 3.707 14 O -0.441 6.441 15 C 0.280 3.720 16 O -0.327 6.327 17 N -0.263 5.263 18 C 0.031 3.969 19 C -0.312 4.312 20 C -0.063 4.063 21 N -0.148 5.148 22 N -0.163 5.163 23 C -0.028 4.028 24 C -0.087 4.087 25 N -0.251 5.251 26 C -0.132 4.132 27 C -0.012 4.012 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.265 0.735 37 H 0.169 0.831 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.159 0.841 41 H 0.108 0.892 42 H 0.030 0.970 43 H 0.116 0.884 44 H 0.095 0.905 45 H 0.133 0.867 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.460 12.884 13.013 18.318 hybrid contribution 0.330 -1.374 -0.520 1.506 sum 0.791 11.510 12.494 17.006 Atomic orbital electron populations 1.22044 0.93885 1.03683 1.01610 1.21733 0.95763 0.80868 1.03680 1.48290 1.58956 1.14733 1.07092 1.19634 0.96288 0.93255 0.78837 1.21370 0.95064 1.33456 1.06826 0.93898 1.25474 1.00749 0.94507 0.96559 1.70001 1.35312 1.34880 1.15392 0.85762 0.80814 0.78459 0.77485 1.19372 1.20276 1.20800 1.19564 0.79566 0.86938 0.84589 1.90649 1.55619 1.65964 1.31878 1.20446 0.79548 0.88663 0.83380 1.90862 1.44635 1.66649 1.30578 1.42196 1.66232 1.07642 1.10255 1.19315 0.99045 0.85608 0.92962 1.21385 1.16424 0.93244 1.00193 1.22194 0.99836 0.98441 0.85858 1.48487 1.53538 1.08204 1.04531 1.77138 1.28315 0.91275 1.19544 1.22912 1.02547 0.82169 0.95196 1.22880 0.96951 0.99241 0.89622 1.62542 1.13620 1.32898 1.16066 1.22562 0.87654 1.00171 1.02819 1.21350 1.04757 0.81031 0.94100 0.93266 0.92918 0.88548 0.89609 0.89668 0.95868 0.92803 0.92640 0.73457 0.83143 0.88498 0.87201 0.84079 0.89233 0.96954 0.88364 0.90461 0.86748 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 10.24 71.98 0.74 -3.71 16 2 C 0.10 3.53 6.18 86.38 0.53 4.06 16 3 N -0.56 -24.31 2.48 -827.87 -2.05 -26.36 16 4 C 0.24 12.16 4.79 85.63 0.41 12.57 16 5 C -0.53 -29.24 8.31 25.60 0.21 -29.02 16 6 H 0.04 2.41 7.81 -2.91 -0.02 2.39 16 7 C 0.03 1.51 5.46 84.66 0.46 1.98 16 8 N -0.92 -53.04 13.29 21.45 0.28 -52.75 16 9 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 13 C 0.51 22.09 7.67 87.24 0.67 22.76 16 14 O -0.56 -23.70 15.98 -3.30 -0.05 -23.75 16 15 C 0.50 21.74 7.73 87.23 0.67 22.42 16 16 O -0.46 -22.72 9.49 -3.34 -0.03 -22.75 16 17 N -0.61 -23.24 5.43 -308.54 -1.68 -24.92 16 18 C 0.29 10.84 8.11 133.38 1.08 11.92 16 19 C -0.28 -10.70 9.56 22.01 0.21 -10.49 16 20 C 0.07 1.95 5.94 41.17 0.24 2.19 16 21 N -0.36 -9.89 3.81 -333.72 -1.27 -11.16 16 22 N -0.33 -11.33 12.66 -54.24 -0.69 -12.01 16 23 C 0.09 1.49 6.57 86.48 0.57 2.06 16 24 C 0.04 0.49 5.96 86.40 0.51 1.01 16 25 N -0.53 -8.39 5.23 -924.27 -4.83 -13.23 16 26 C 0.02 0.23 8.69 127.69 1.11 1.34 16 27 C 0.12 2.50 6.17 85.52 0.53 3.03 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.10 2.12 8.14 -2.39 -0.02 2.11 16 31 H 0.09 2.94 8.11 -2.38 -0.02 2.92 16 32 H 0.08 2.87 7.24 -2.38 -0.02 2.85 16 33 H 0.02 1.21 8.02 -2.39 -0.02 1.19 16 34 H 0.05 3.00 5.41 -2.39 -0.01 2.99 16 35 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 36 H 0.43 14.47 8.31 -92.71 -0.77 13.70 16 37 H 0.15 6.62 5.92 -2.91 -0.02 6.61 16 38 H 0.10 1.33 7.16 -2.39 -0.02 1.31 16 39 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.09 1.11 8.07 -2.38 -0.02 1.09 16 42 H 0.01 0.23 6.18 -2.39 -0.01 0.21 16 43 H 0.10 0.90 8.10 -2.38 -0.02 0.88 16 44 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.11 2.29 8.03 -2.39 -0.02 2.27 16 Total: -1.00 -71.34 374.22 -0.09 -71.43 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.25 Total: 26.99 kcal Atomic # 6 Polarization: 34.16 SS G_CDS: 7.95 Total: 42.11 kcal Atomic # 7 Polarization: -130.19 SS G_CDS: -10.23 Total: -140.43 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -0.08 Total: -46.50 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -71.34 -0.09 -71.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352184574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.546 kcal (2) G-P(sol) polarization free energy of solvation -71.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds