Wall clock time and date at job start Tue Mar 31 2020 18:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46968 * 2 1 4 4 C 1.50696 * 109.46906 * 120.00296 * 2 1 3 5 5 H 1.07999 * 120.00428 * 94.90499 * 4 2 1 6 6 C 1.37876 * 119.99815 * 274.90090 * 4 2 1 7 7 N 1.31521 * 119.99931 * 174.94957 * 6 4 2 8 8 Si 1.86801 * 120.00178 * 354.94587 * 6 4 2 9 9 H 1.48500 * 109.47155 * 275.02923 * 8 6 4 10 10 H 1.48499 * 109.46793 * 35.03205 * 8 6 4 11 11 H 1.48496 * 109.47049 * 155.03029 * 8 6 4 12 12 N 1.46496 * 109.46874 * 240.00036 * 2 1 3 13 13 C 1.46499 * 120.00403 * 299.99956 * 12 2 1 14 14 C 1.34780 * 119.99869 * 119.99856 * 12 2 1 15 15 O 1.21364 * 120.00077 * 5.70204 * 14 12 2 16 16 C 1.49344 * 120.00112 * 185.69599 * 14 12 2 17 17 O 1.21383 * 119.99921 * 5.64997 * 16 14 12 18 18 N 1.34783 * 119.99889 * 185.64280 * 16 14 12 19 19 C 1.39923 * 119.99621 * 180.02562 * 18 16 14 20 20 C 1.40705 * 125.94822 * 359.72073 * 19 18 16 21 21 C 1.34473 * 107.75166 * 179.78872 * 20 19 18 22 22 N 1.35566 * 107.99121 * 0.52763 * 21 20 19 23 23 N 1.31545 * 125.94460 * 180.02562 * 19 18 16 24 24 C 1.46651 * 123.57428 * 179.51520 * 22 21 20 25 25 C 1.53390 * 108.23547 * 343.53673 * 24 22 21 26 26 N 1.46974 * 109.72603 * 49.86712 * 25 24 22 27 27 C 1.46900 * 110.99973 * 165.18049 * 26 25 24 28 28 C 1.47358 * 111.12445 * 289.22205 * 26 25 24 29 29 H 1.09008 * 109.47327 * 55.01437 * 1 2 3 30 30 H 1.08999 * 109.47150 * 175.01564 * 1 2 3 31 31 H 1.09003 * 109.47504 * 295.01662 * 1 2 3 32 32 H 0.97000 * 120.00143 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.47079 * 95.68342 * 13 12 2 34 34 H 1.08999 * 109.47346 * 215.68352 * 13 12 2 35 35 H 1.09000 * 109.46900 * 335.69078 * 13 12 2 36 36 H 0.97002 * 119.99658 * 0.02562 * 18 16 14 37 37 H 1.08004 * 126.12233 * 359.96671 * 20 19 18 38 38 H 1.08998 * 109.71808 * 103.22385 * 24 22 21 39 39 H 1.09002 * 109.70877 * 223.86074 * 24 22 21 40 40 H 1.08998 * 109.42933 * 289.78262 * 25 24 22 41 41 H 1.09008 * 109.42740 * 169.94369 * 25 24 22 42 42 H 1.08994 * 109.46901 * 188.07159 * 27 26 25 43 43 H 1.09004 * 109.46790 * 308.06600 * 27 26 25 44 44 H 1.08995 * 109.47598 * 68.06549 * 27 26 25 45 45 H 1.09003 * 109.74958 * 290.32578 * 28 26 25 46 46 H 1.09000 * 109.78568 * 169.62512 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.2877 -1.7587 1.1823 6 6 2.1658 -0.0222 2.4176 7 7 2.5086 -0.6626 3.5140 8 14 1.8602 1.8199 2.4688 9 1 3.0993 2.5384 2.0768 10 1 0.7673 2.1667 1.5251 11 1 1.4709 2.2190 3.8451 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.1718 1.0919 -1.8420 16 6 3.1857 -0.6972 -3.3634 17 8 2.7250 -1.7825 -3.6518 18 7 4.0515 -0.0891 -4.1984 19 6 4.4189 -0.7088 -5.3979 20 6 3.9679 -1.9617 -5.8523 21 6 4.5459 -2.1984 -7.0431 22 7 5.3465 -1.1445 -7.3368 23 7 5.2505 -0.2239 -6.2944 24 6 6.1512 -1.0532 -8.5594 25 6 6.2477 -2.4543 -9.1762 26 7 4.9063 -3.0469 -9.2737 27 6 4.9105 -4.2157 -10.1636 28 6 4.3833 -3.3991 -7.9419 29 1 -0.3634 0.5893 -0.8420 30 1 -0.3633 -1.0238 -0.0893 31 1 -0.3634 0.4346 0.9313 32 1 2.6029 -0.1783 4.3492 33 1 0.7949 -2.1449 -2.0835 34 1 2.5037 -2.6070 -1.8966 35 1 1.4309 -2.5710 -0.4766 36 1 4.4199 0.7781 -3.9677 37 1 3.2784 -2.6150 -5.3382 38 1 5.6731 -0.3733 -9.2645 39 1 7.1495 -0.6892 -8.3161 40 1 6.8777 -3.0843 -8.5483 41 1 6.6857 -2.3827 -10.1719 42 1 3.8861 -4.5479 -10.3318 43 1 5.3657 -3.9452 -11.1164 44 1 5.4827 -5.0210 -9.7031 45 1 4.9445 -4.2411 -7.5366 46 1 3.3282 -3.6622 -8.0175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352185448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:34 Heat of formation + Delta-G solvation = 50.247735 kcal Electronic energy + Delta-G solvation = -28959.658170 eV Core-core repulsion = 24887.676093 eV Total energy + Delta-G solvation = -4071.982078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82252 -40.40742 -38.51191 -37.83192 -35.99442 -34.76591 -33.15512 -32.64465 -31.31541 -30.40841 -28.82186 -27.26803 -26.41483 -25.46278 -25.10641 -24.29430 -22.64840 -21.75044 -20.17405 -19.85768 -18.75500 -17.42208 -17.27166 -16.86457 -16.75290 -16.34925 -15.87640 -15.66118 -15.36727 -15.16422 -15.03338 -14.78424 -14.32115 -13.97998 -13.60820 -13.33412 -13.29526 -12.98722 -12.79543 -12.62504 -12.39972 -12.33243 -12.29223 -12.06749 -11.98766 -11.74099 -11.55279 -11.16249 -10.91116 -10.78800 -10.72130 -10.65733 -10.43965 -9.83057 -9.35492 -9.18392 -8.95997 -8.74404 -8.64134 -8.30804 -7.86984 -6.19747 -4.22317 1.39965 1.89452 1.90169 2.77562 2.82078 3.20006 3.28646 3.35427 3.40724 3.65221 3.85931 4.03782 4.20731 4.34592 4.39603 4.59240 4.66555 4.84459 4.88058 4.98147 4.98765 5.11000 5.16789 5.22822 5.29541 5.34112 5.55146 5.63858 5.91956 6.03697 6.14463 6.19664 6.25879 6.27558 6.37372 6.49832 6.51871 6.71006 6.82988 6.83850 6.89312 7.02740 7.25910 7.52053 7.67656 7.82572 8.01928 8.34078 8.53527 8.82021 9.40659 10.91991 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028495 B = 0.002336 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.406450 B =11984.380528 C =12445.155671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.224 3.776 3 H 0.064 0.936 4 C -0.529 4.529 5 H 0.082 0.918 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.871 3.129 9 H -0.271 1.271 10 H -0.260 1.260 11 H -0.286 1.286 12 N -0.547 5.547 13 C 0.080 3.920 14 C 0.499 3.501 15 O -0.534 6.534 16 C 0.519 3.481 17 O -0.492 6.492 18 N -0.614 5.614 19 C 0.301 3.699 20 C -0.252 4.252 21 C 0.087 3.913 22 N -0.362 5.362 23 N -0.313 5.313 24 C 0.145 3.855 25 C 0.037 3.963 26 N -0.546 5.546 27 C 0.025 3.975 28 C 0.119 3.881 29 H 0.027 0.973 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.267 0.733 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.427 0.573 37 H 0.176 0.824 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.032 0.968 45 H 0.065 0.935 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.111 -6.416 -26.946 28.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.124 3.876 3 H 0.082 0.918 4 C -0.567 4.567 5 H 0.100 0.900 6 C -0.123 4.123 7 N -0.526 5.526 8 Si 0.697 3.303 9 H -0.196 1.196 10 H -0.185 1.185 11 H -0.212 1.212 12 N -0.277 5.277 13 C -0.063 4.063 14 C 0.280 3.720 15 O -0.413 6.413 16 C 0.301 3.699 17 O -0.364 6.364 18 N -0.264 5.264 19 C 0.046 3.954 20 C -0.283 4.283 21 C -0.041 4.041 22 N -0.148 5.148 23 N -0.143 5.143 24 C 0.023 3.977 25 C -0.092 4.092 26 N -0.271 5.271 27 C -0.123 4.123 28 C -0.010 4.010 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.265 0.735 37 H 0.193 0.807 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.068 0.932 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.050 0.950 45 H 0.083 0.917 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.474 -5.259 -27.337 28.371 hybrid contribution 0.188 0.173 0.820 0.859 sum 5.662 -5.086 -26.517 27.587 Atomic orbital electron populations 1.22307 0.97693 1.00776 1.00089 1.19463 0.91105 0.94835 0.82207 0.91829 1.21069 1.45447 0.98578 0.91623 0.90039 1.24894 0.93836 0.98309 0.95310 1.69882 1.46672 1.36337 0.99669 0.86982 0.79929 0.85984 0.77391 1.19600 1.18455 1.21214 1.48135 1.45792 1.12576 1.21189 1.22004 1.01068 0.81201 1.01981 1.19509 0.81767 0.86585 0.84164 1.90734 1.54550 1.18912 1.77103 1.20759 0.78494 0.85308 0.85294 1.90631 1.51929 1.19650 1.74162 1.42369 1.44351 1.23512 1.16199 1.19150 0.95873 0.92635 0.87735 1.21303 1.10691 0.99029 0.97266 1.20906 0.95325 0.91720 0.96107 1.48099 1.36270 1.14025 1.16385 1.77283 1.24227 1.14651 0.98130 1.21862 0.95643 0.98074 0.82078 1.22540 0.90347 0.94269 1.02053 1.62146 1.23087 1.30617 1.11246 1.22411 1.02840 0.90595 0.96422 1.20957 1.02576 0.92027 0.85441 0.95360 0.92876 0.91911 0.92285 0.92912 0.90440 0.90101 0.73507 0.80729 0.89217 0.88639 0.93201 0.87912 0.90529 0.90823 0.94966 0.91730 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.89 37.16 0.33 -2.79 16 2 C 0.22 5.30 2.18 -69.09 -0.15 5.15 16 3 H 0.06 1.62 4.68 -51.93 -0.24 1.38 16 4 C -0.53 -14.30 8.65 -34.44 -0.30 -14.60 16 5 H 0.08 2.35 6.99 -52.49 -0.37 1.98 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 7 N -0.89 -26.31 13.96 55.43 0.77 -25.53 16 8 Si 0.87 21.35 26.19 -169.99 -4.45 16.90 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.26 -6.04 6.14 56.52 0.35 -5.70 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 N -0.55 -11.52 2.75 -175.81 -0.48 -12.01 16 13 C 0.08 1.44 8.08 59.85 0.48 1.92 16 14 C 0.50 10.19 7.72 -11.63 -0.09 10.10 16 15 O -0.53 -12.05 15.83 5.48 0.09 -11.96 16 16 C 0.52 9.06 7.67 -11.63 -0.09 8.98 16 17 O -0.49 -8.48 10.51 5.47 0.06 -8.42 16 18 N -0.61 -9.75 5.43 -11.46 -0.06 -9.81 16 19 C 0.30 4.71 8.11 -154.24 -1.25 3.45 16 20 C -0.25 -3.61 9.56 -39.98 -0.38 -3.99 16 21 C 0.09 1.03 6.68 -82.19 -0.55 0.48 16 22 N -0.36 -4.41 4.06 -56.84 -0.23 -4.64 16 23 N -0.31 -4.70 12.66 31.51 0.40 -4.30 16 24 C 0.14 1.12 7.53 -3.76 -0.03 1.09 16 25 C 0.04 0.21 5.54 -3.58 -0.02 0.19 16 26 N -0.55 -3.72 4.92 -243.55 -1.20 -4.92 16 27 C 0.03 0.11 9.63 60.06 0.58 0.68 16 28 C 0.12 0.96 5.87 -4.65 -0.03 0.93 16 29 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.05 1.02 7.51 -51.93 -0.39 0.63 16 31 H 0.06 1.33 6.73 -51.93 -0.35 0.98 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 34 H 0.08 1.34 6.00 -51.93 -0.31 1.03 16 35 H 0.08 1.50 6.72 -51.93 -0.35 1.15 16 36 H 0.43 6.37 8.31 -40.82 -0.34 6.03 16 37 H 0.18 2.54 5.92 -52.48 -0.31 2.23 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.29 8.07 -51.93 -0.42 -0.13 16 41 H 0.10 0.32 7.86 -51.92 -0.41 -0.09 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.23 7.92 -51.93 -0.41 -0.18 16 44 H 0.03 0.12 8.11 -51.93 -0.42 -0.30 16 45 H 0.06 0.46 8.11 -51.93 -0.42 0.03 16 46 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -33.31 368.27 -7.61 -40.93 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.46 Total: 4.46 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: -1.59 Total: 13.76 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.80 Total: -61.22 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.14 Total: -20.38 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.45 Total: 16.90 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.31 -7.61 -40.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352185448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.174 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds