Wall clock time and date at job start Tue Mar 31 2020 18:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46968 * 2 1 4 4 C 1.50696 * 109.46906 * 120.00296 * 2 1 3 5 5 H 1.07999 * 120.00428 * 94.90499 * 4 2 1 6 6 C 1.37876 * 119.99815 * 274.90090 * 4 2 1 7 7 N 1.31521 * 119.99931 * 174.94957 * 6 4 2 8 8 Si 1.86801 * 120.00178 * 354.94587 * 6 4 2 9 9 H 1.48500 * 109.47155 * 275.02923 * 8 6 4 10 10 H 1.48499 * 109.46793 * 35.03205 * 8 6 4 11 11 H 1.48496 * 109.47049 * 155.03029 * 8 6 4 12 12 N 1.46496 * 109.46874 * 240.00036 * 2 1 3 13 13 C 1.46499 * 120.00403 * 299.99956 * 12 2 1 14 14 C 1.34780 * 119.99869 * 119.99856 * 12 2 1 15 15 O 1.21364 * 120.00077 * 5.70204 * 14 12 2 16 16 C 1.49344 * 120.00112 * 185.69599 * 14 12 2 17 17 O 1.21383 * 119.99921 * 5.64997 * 16 14 12 18 18 N 1.34783 * 119.99889 * 185.64280 * 16 14 12 19 19 C 1.39923 * 119.99621 * 180.02562 * 18 16 14 20 20 C 1.40705 * 125.94822 * 359.72073 * 19 18 16 21 21 C 1.34473 * 107.75166 * 179.78872 * 20 19 18 22 22 N 1.35566 * 107.99121 * 0.52763 * 21 20 19 23 23 N 1.31545 * 125.94460 * 180.02562 * 19 18 16 24 24 C 1.46651 * 123.57428 * 179.51520 * 22 21 20 25 25 C 1.53390 * 108.23547 * 343.53673 * 24 22 21 26 26 N 1.46974 * 109.72603 * 49.86712 * 25 24 22 27 27 C 1.46900 * 110.99973 * 165.18049 * 26 25 24 28 28 C 1.47358 * 111.12445 * 289.22205 * 26 25 24 29 29 H 1.09008 * 109.47327 * 55.01437 * 1 2 3 30 30 H 1.08999 * 109.47150 * 175.01564 * 1 2 3 31 31 H 1.09003 * 109.47504 * 295.01662 * 1 2 3 32 32 H 0.97000 * 120.00143 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.47079 * 95.68342 * 13 12 2 34 34 H 1.08999 * 109.47346 * 215.68352 * 13 12 2 35 35 H 1.09000 * 109.46900 * 335.69078 * 13 12 2 36 36 H 0.97002 * 119.99658 * 0.02562 * 18 16 14 37 37 H 1.08004 * 126.12233 * 359.96671 * 20 19 18 38 38 H 1.08998 * 109.71808 * 103.22385 * 24 22 21 39 39 H 1.09002 * 109.70877 * 223.86074 * 24 22 21 40 40 H 1.08998 * 109.42933 * 289.78262 * 25 24 22 41 41 H 1.09008 * 109.42740 * 169.94369 * 25 24 22 42 42 H 1.08994 * 109.46901 * 188.07159 * 27 26 25 43 43 H 1.09004 * 109.46790 * 308.06600 * 27 26 25 44 44 H 1.08995 * 109.47598 * 68.06549 * 27 26 25 45 45 H 1.09003 * 109.74958 * 290.32578 * 28 26 25 46 46 H 1.09000 * 109.78568 * 169.62512 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.2877 -1.7587 1.1823 6 6 2.1658 -0.0222 2.4176 7 7 2.5086 -0.6626 3.5140 8 14 1.8602 1.8199 2.4688 9 1 3.0993 2.5384 2.0768 10 1 0.7673 2.1667 1.5251 11 1 1.4709 2.2190 3.8451 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.1718 1.0919 -1.8420 16 6 3.1857 -0.6972 -3.3634 17 8 2.7250 -1.7825 -3.6518 18 7 4.0515 -0.0891 -4.1984 19 6 4.4189 -0.7088 -5.3979 20 6 3.9679 -1.9617 -5.8523 21 6 4.5459 -2.1984 -7.0431 22 7 5.3465 -1.1445 -7.3368 23 7 5.2505 -0.2239 -6.2944 24 6 6.1512 -1.0532 -8.5594 25 6 6.2477 -2.4543 -9.1762 26 7 4.9063 -3.0469 -9.2737 27 6 4.9105 -4.2157 -10.1636 28 6 4.3833 -3.3991 -7.9419 29 1 -0.3634 0.5893 -0.8420 30 1 -0.3633 -1.0238 -0.0893 31 1 -0.3634 0.4346 0.9313 32 1 2.6029 -0.1783 4.3492 33 1 0.7949 -2.1449 -2.0835 34 1 2.5037 -2.6070 -1.8966 35 1 1.4309 -2.5710 -0.4766 36 1 4.4199 0.7781 -3.9677 37 1 3.2784 -2.6150 -5.3382 38 1 5.6731 -0.3733 -9.2645 39 1 7.1495 -0.6892 -8.3161 40 1 6.8777 -3.0843 -8.5483 41 1 6.6857 -2.3827 -10.1719 42 1 3.8861 -4.5479 -10.3318 43 1 5.3657 -3.9452 -11.1164 44 1 5.4827 -5.0210 -9.7031 45 1 4.9445 -4.2411 -7.5366 46 1 3.3282 -3.6622 -8.0175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352185448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:32 Heat of formation + Delta-G solvation = 25.147254 kcal Electronic energy + Delta-G solvation = -28960.746609 eV Core-core repulsion = 24887.676093 eV Total energy + Delta-G solvation = -4073.070516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.84745 -41.81166 -39.85194 -38.66352 -37.63490 -36.04329 -34.65750 -33.91903 -32.24384 -32.19217 -29.65774 -28.00789 -27.83889 -27.28626 -26.51762 -25.09554 -23.37340 -23.18477 -21.48959 -21.05039 -20.02544 -19.16804 -18.44987 -18.32038 -17.94819 -17.50016 -17.08332 -16.98036 -16.52335 -16.15364 -15.98129 -15.81058 -15.55472 -15.12955 -15.04938 -14.67991 -14.48570 -14.20007 -14.11472 -14.00881 -13.62591 -13.39570 -13.33135 -13.19096 -13.07022 -12.82818 -12.64808 -12.57319 -12.50466 -12.35424 -12.23515 -11.79390 -11.77530 -11.74155 -11.33378 -10.78554 -10.47989 -9.96788 -9.62045 -9.46607 -9.31243 -8.35422 -6.40971 0.04681 0.77876 0.81532 1.32137 1.38133 1.44852 1.60526 1.63450 2.19223 2.29908 2.47234 2.71112 3.01218 3.16837 3.40148 3.53187 3.92203 4.07645 4.19232 4.35917 4.38645 4.43050 4.46147 4.46564 4.56823 4.63050 4.63447 4.66195 4.71608 4.73405 4.78267 4.81387 4.87432 5.07185 5.10164 5.10660 5.25189 5.47825 5.53468 5.59714 5.72792 5.81718 5.85100 6.00472 6.07709 6.38351 6.54777 6.63860 6.67552 6.87818 7.25436 8.79642 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028495 B = 0.002336 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.406450 B =11984.380528 C =12445.155671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.224 3.776 3 H 0.047 0.953 4 C -0.526 4.526 5 H 0.053 0.947 6 C 0.029 3.971 7 N -0.933 5.933 8 Si 0.924 3.076 9 H -0.281 1.281 10 H -0.238 1.238 11 H -0.278 1.278 12 N -0.556 5.556 13 C 0.085 3.915 14 C 0.497 3.503 15 O -0.560 6.560 16 C 0.529 3.471 17 O -0.490 6.490 18 N -0.606 5.606 19 C 0.279 3.721 20 C -0.278 4.278 21 C 0.099 3.901 22 N -0.358 5.358 23 N -0.336 5.336 24 C 0.132 3.868 25 C 0.042 3.958 26 N -0.559 5.559 27 C 0.026 3.974 28 C 0.121 3.879 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.269 0.731 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.429 0.571 37 H 0.169 0.831 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.050 0.950 41 H 0.134 0.866 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.038 0.962 45 H 0.078 0.922 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 -6.779 -30.130 31.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.123 3.877 3 H 0.065 0.935 4 C -0.565 4.565 5 H 0.071 0.929 6 C -0.171 4.171 7 N -0.572 5.572 8 Si 0.748 3.252 9 H -0.207 1.207 10 H -0.161 1.161 11 H -0.204 1.204 12 N -0.286 5.286 13 C -0.057 4.057 14 C 0.278 3.722 15 O -0.440 6.440 16 C 0.310 3.690 17 O -0.362 6.362 18 N -0.256 5.256 19 C 0.025 3.975 20 C -0.308 4.308 21 C -0.030 4.030 22 N -0.144 5.144 23 N -0.166 5.166 24 C 0.012 3.988 25 C -0.087 4.087 26 N -0.284 5.284 27 C -0.121 4.121 28 C -0.008 4.008 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.267 0.733 37 H 0.186 0.814 38 H 0.115 0.885 39 H 0.127 0.873 40 H 0.068 0.932 41 H 0.152 0.848 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.057 0.943 45 H 0.096 0.904 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.357 -5.634 -30.573 31.546 hybrid contribution 0.334 0.196 1.629 1.675 sum 5.692 -5.438 -28.944 29.995 Atomic orbital electron populations 1.22181 0.95119 1.02127 1.00797 1.19300 0.92970 0.93611 0.81841 0.93474 1.21273 1.44548 0.97533 0.93111 0.92903 1.25619 0.94033 1.02358 0.95064 1.69995 1.48800 1.38047 1.00378 0.86130 0.79997 0.80948 0.78160 1.20654 1.16121 1.20369 1.48106 1.46089 1.13668 1.20722 1.22082 1.02240 0.79469 1.01897 1.19931 0.80934 0.86333 0.84982 1.90709 1.55309 1.20106 1.77922 1.20009 0.79213 0.85240 0.84552 1.90633 1.52203 1.19397 1.73964 1.42166 1.43708 1.23426 1.16316 1.19285 0.97009 0.93438 0.87753 1.21323 1.11986 0.98886 0.98649 1.21402 0.93608 0.92390 0.95634 1.48553 1.35996 1.13299 1.16507 1.77190 1.24408 1.16065 0.98953 1.22336 0.95785 1.00081 0.80568 1.22617 0.90004 0.92583 1.03527 1.62167 1.23746 1.31916 1.10543 1.22472 1.03365 0.89835 0.96463 1.21064 1.03598 0.90450 0.85715 0.93174 0.91564 0.92344 0.92166 0.90544 0.89856 0.91162 0.73278 0.81375 0.88480 0.87334 0.93185 0.84771 0.90302 0.89317 0.94341 0.90394 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 8.89 71.98 0.64 -5.09 16 2 C 0.22 10.53 2.18 44.24 0.10 10.63 16 3 H 0.05 2.38 4.68 -2.39 -0.01 2.37 16 4 C -0.53 -28.93 8.65 25.60 0.22 -28.71 16 5 H 0.05 3.15 6.99 -2.91 -0.02 3.13 16 6 C 0.03 1.65 5.47 84.65 0.46 2.11 16 7 N -0.93 -56.57 13.96 21.45 0.30 -56.27 16 8 Si 0.92 44.18 26.19 68.60 1.80 45.98 16 9 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 10 H -0.24 -10.44 6.14 99.48 0.61 -9.83 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 N -0.56 -23.27 2.75 -828.50 -2.28 -25.55 16 13 C 0.08 2.99 8.08 127.77 1.03 4.02 16 14 C 0.50 20.25 7.72 87.24 0.67 20.93 16 15 O -0.56 -25.45 15.83 -3.29 -0.05 -25.50 16 16 C 0.53 18.38 7.67 87.24 0.67 19.05 16 17 O -0.49 -16.60 10.51 -3.35 -0.04 -16.64 16 18 N -0.61 -19.37 5.43 -308.52 -1.68 -21.04 16 19 C 0.28 8.68 8.11 133.39 1.08 9.76 16 20 C -0.28 -7.81 9.56 22.01 0.21 -7.60 16 21 C 0.10 2.20 6.68 41.17 0.27 2.48 16 22 N -0.36 -8.21 4.06 -333.74 -1.36 -9.56 16 23 N -0.34 -9.93 12.66 -54.24 -0.69 -10.61 16 24 C 0.13 1.73 7.53 86.48 0.65 2.38 16 25 C 0.04 0.33 5.54 86.42 0.48 0.81 16 26 N -0.56 -5.86 4.92 -924.46 -4.55 -10.41 16 27 C 0.03 0.13 9.63 127.69 1.23 1.36 16 28 C 0.12 1.65 5.87 85.52 0.50 2.15 16 29 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.07 2.43 7.51 -2.39 -0.02 2.42 16 31 H 0.06 2.36 6.73 -2.39 -0.02 2.35 16 32 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.08 2.33 8.09 -2.38 -0.02 2.31 16 34 H 0.08 2.84 6.00 -2.39 -0.01 2.82 16 35 H 0.07 2.62 6.72 -2.39 -0.02 2.60 16 36 H 0.43 13.03 8.31 -92.71 -0.77 12.26 16 37 H 0.17 4.85 5.92 -2.91 -0.02 4.83 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.05 0.42 8.07 -2.39 -0.02 0.41 16 41 H 0.13 0.25 7.86 -2.38 -0.02 0.24 16 42 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.09 0.20 7.92 -2.39 -0.02 0.18 16 44 H 0.04 0.16 8.11 -2.39 -0.02 0.14 16 45 H 0.08 0.89 8.11 -2.39 -0.02 0.87 16 46 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -72.96 368.27 -0.15 -73.12 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.16 Total: 22.19 kcal Atomic # 6 Polarization: 26.07 SS G_CDS: 8.22 Total: 34.29 kcal Atomic # 7 Polarization: -123.19 SS G_CDS: -10.25 Total: -133.44 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.09 Total: -42.14 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.80 Total: 45.98 kcal Total: -72.96 -0.15 -73.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352185448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.265 kcal (2) G-P(sol) polarization free energy of solvation -72.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds