Wall clock time and date at job start Tue Mar 31 2020 20:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47411 * 89.99586 * 9 7 5 11 11 H 1.48497 * 109.47183 * 209.99666 * 9 7 5 12 12 H 1.48503 * 109.46948 * 330.00085 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.47480 * 111.00171 * 265.96874 * 16 15 13 18 18 C 1.53513 * 87.93170 * 221.29782 * 17 16 15 19 19 N 1.46493 * 114.34506 * 272.36508 * 18 17 16 20 20 C 1.34784 * 119.99875 * 248.92376 * 19 18 17 21 21 O 1.21565 * 120.00133 * 0.02562 * 20 19 18 22 22 C 1.47713 * 119.99583 * 179.97438 * 20 19 18 23 23 C 1.41502 * 126.51214 * 179.71319 * 22 20 19 24 24 C 1.35367 * 105.50110 * 179.90645 * 23 22 20 25 25 N 1.35034 * 107.22785 * 0.35305 * 24 23 22 26 26 H 0.96997 * 124.88426 * 179.75436 * 25 24 23 27 27 N 1.28466 * 110.23136 * 359.76817 * 25 24 23 28 28 C 1.47482 * 110.99764 * 169.99672 * 16 15 13 29 29 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 30 30 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 32 32 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 33 33 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 34 34 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 35 35 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 36 36 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 38 38 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 39 39 H 1.08999 * 113.47664 * 336.06792 * 17 16 15 40 40 H 1.08994 * 113.47488 * 106.52987 * 17 16 15 41 41 H 1.08998 * 114.16723 * 139.66940 * 18 17 16 42 42 H 0.96998 * 120.00117 * 68.92512 * 19 18 17 43 43 H 1.07996 * 127.24984 * 0.02562 * 23 22 20 44 44 H 1.08004 * 126.38705 * 180.16082 * 24 23 22 45 45 H 1.08994 * 113.48196 * 253.46980 * 28 16 15 46 46 H 1.09003 * 113.47819 * 23.94188 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 5.9761 0.8743 -4.2601 11 1 6.3923 3.2626 -4.2008 12 1 6.7735 1.9157 -2.2204 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 3.6958 2.0024 4.0530 18 6 3.1733 2.1272 5.4910 19 7 3.1232 3.5006 5.9983 20 6 3.9661 3.8892 6.9756 21 8 4.7682 3.1001 7.4359 22 6 3.9159 5.2742 7.4866 23 6 4.7270 5.8251 8.5069 24 6 4.3272 7.1124 8.6315 25 7 3.3309 7.3096 7.7416 26 1 2.8553 8.1458 7.6176 27 7 3.1034 6.2303 7.0830 28 6 1.8567 1.6375 4.8718 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6876 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 3.6747 3.5148 -4.4447 37 1 0.9443 1.0114 2.5302 38 1 2.6227 0.4186 2.5299 39 1 4.0915 1.0140 3.8190 40 1 4.3727 2.8069 3.7655 41 1 3.6248 1.4256 6.1924 42 1 2.4835 4.1304 5.6308 43 1 5.5031 5.3245 9.0668 44 1 4.7280 7.8443 9.3172 45 1 0.9750 2.1328 5.2783 46 1 1.7616 0.5517 4.8564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001391407240.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:04 Heat of formation + Delta-G solvation = 55.526338 kcal Electronic energy + Delta-G solvation = -28415.157929 eV Core-core repulsion = 24343.404748 eV Total energy + Delta-G solvation = -4071.753180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.90623 -40.71402 -39.08829 -38.28644 -35.16963 -34.04361 -32.79016 -32.15118 -31.07863 -30.20052 -29.88665 -27.18473 -26.01985 -25.23778 -23.89986 -22.97843 -22.18343 -21.99040 -20.45045 -19.83395 -18.83310 -18.36730 -17.30385 -16.59715 -16.30472 -16.29570 -15.98246 -15.83755 -15.30151 -14.96158 -14.48909 -14.43195 -14.08720 -14.00169 -13.80835 -13.51175 -13.32821 -13.23118 -12.85502 -12.58460 -12.29682 -11.98249 -11.72398 -11.42989 -11.38910 -11.23011 -11.14960 -10.87698 -10.84782 -10.67003 -10.49074 -10.31989 -10.09258 -9.75944 -9.59396 -9.52046 -9.15708 -9.03747 -8.54186 -8.40494 -7.58964 -6.01152 -4.05626 1.32987 1.84155 2.52347 3.00373 3.23651 3.31679 3.38448 3.42419 3.52772 3.71968 4.18065 4.20766 4.39900 4.48986 4.53106 4.72907 4.91351 5.05749 5.15309 5.24123 5.29962 5.30981 5.33621 5.40337 5.43513 5.49073 5.50808 5.64128 5.65607 5.79856 5.93486 6.03434 6.04377 6.24777 6.28848 6.41085 6.49249 6.63124 6.87337 7.15914 7.32550 7.50160 7.61567 7.61821 7.96116 8.08285 8.27815 8.50419 8.95029 9.21337 9.59603 11.06864 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012412 B = 0.002488 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.367120 B =11249.297171 C =12387.119518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.602 5.602 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.508 3.492 14 O -0.520 6.520 15 C -0.001 4.001 16 N -0.445 5.445 17 C -0.011 4.011 18 C 0.118 3.882 19 N -0.688 5.688 20 C 0.608 3.392 21 O -0.535 6.535 22 C -0.013 4.013 23 C -0.179 4.179 24 C -0.017 4.017 25 N -0.382 5.382 26 H 0.447 0.553 27 N -0.253 5.253 28 C -0.012 4.012 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.415 0.585 43 H 0.163 0.837 44 H 0.186 0.814 45 H 0.091 0.909 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 0.778 24.358 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.336 5.336 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.293 3.707 14 O -0.396 6.396 15 C -0.133 4.133 16 N -0.167 5.167 17 C -0.141 4.141 18 C 0.011 3.989 19 N -0.338 5.338 20 C 0.392 3.608 21 O -0.410 6.410 22 C -0.174 4.174 23 C -0.207 4.207 24 C -0.161 4.161 25 N -0.096 5.096 26 H 0.292 0.708 27 N -0.090 5.090 28 C -0.142 4.142 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.252 0.748 43 H 0.181 0.819 44 H 0.203 0.797 45 H 0.110 0.890 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.841 1.761 23.486 24.044 hybrid contribution 1.255 -0.409 -0.115 1.326 sum -3.585 1.351 23.371 23.683 Atomic orbital electron populations 1.22227 0.96896 1.01285 1.02331 1.21381 0.93433 0.84439 1.02448 1.48265 1.64421 1.13150 1.07719 1.19227 0.96111 0.93634 0.78142 1.21438 0.96981 1.31730 1.06124 0.92603 1.24934 0.97798 0.94961 0.96455 1.69935 1.35662 1.33567 1.14291 0.86514 0.84792 0.77640 0.78580 1.20680 1.21102 1.19909 1.20029 0.79027 0.87111 0.84520 1.90675 1.44396 1.17674 1.86807 1.22731 1.02676 0.95121 0.92761 1.68864 1.06511 1.41102 1.00220 1.24430 0.93409 1.02578 0.93666 1.21964 0.97343 0.84279 0.95270 1.45350 1.38278 1.12751 1.37448 1.16867 0.80446 0.84535 0.78902 1.90790 1.37964 1.52794 1.59448 1.21941 0.99618 0.94586 1.01294 1.21817 1.03855 0.93775 1.01274 1.22973 0.95055 0.99155 0.98928 1.43393 1.27747 1.11494 1.26960 0.70820 1.73596 1.23112 0.93611 1.18717 1.24295 0.98558 0.99809 0.91522 0.92014 0.92268 0.93138 0.90033 0.92075 0.95146 0.93973 0.92771 0.88611 0.91288 0.90210 0.88811 0.86855 0.74818 0.81892 0.79726 0.89017 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.71 5.93 -4.05 -0.02 1.68 16 3 N -0.60 -12.81 2.46 -175.06 -0.43 -13.24 16 4 C 0.25 6.58 5.16 -5.19 -0.03 6.56 16 5 C -0.52 -15.07 9.39 -34.44 -0.32 -15.40 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 9 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.51 10.75 7.74 -10.98 -0.09 10.67 16 14 O -0.52 -13.60 16.01 5.56 0.09 -13.51 16 15 C 0.00 -0.02 3.85 -4.97 -0.02 -0.04 16 16 N -0.44 -6.45 5.82 -246.09 -1.43 -7.89 16 17 C -0.01 -0.15 7.53 -7.54 -0.06 -0.20 16 18 C 0.12 1.36 4.59 -67.72 -0.31 1.05 16 19 N -0.69 -8.47 5.39 -54.53 -0.29 -8.76 16 20 C 0.61 8.21 7.83 -12.39 -0.10 8.11 16 21 O -0.54 -8.48 16.52 5.31 0.09 -8.39 16 22 C -0.01 -0.16 7.13 -82.76 -0.59 -0.75 16 23 C -0.18 -1.68 10.81 -39.36 -0.43 -2.11 16 24 C -0.02 -0.10 12.02 -17.17 -0.21 -0.31 16 25 N -0.38 -2.61 6.83 30.47 0.21 -2.40 16 26 H 0.45 1.38 8.96 -190.44 -1.71 -0.32 16 27 N -0.25 -2.71 11.92 33.42 0.40 -2.31 16 28 C -0.01 -0.12 7.45 -7.54 -0.06 -0.18 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.10 1.20 7.13 -51.93 -0.37 0.83 16 38 H 0.07 0.90 6.56 -51.93 -0.34 0.55 16 39 H 0.08 0.98 7.42 -51.93 -0.39 0.60 16 40 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.11 1.25 7.45 -51.93 -0.39 0.86 16 42 H 0.42 5.05 8.49 -40.82 -0.35 4.70 16 43 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.19 0.36 8.06 -52.48 -0.42 -0.06 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 LS Contribution 390.15 15.07 5.88 5.88 Total: -1.00 -38.59 390.15 -9.68 -48.26 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.96 Total: 2.56 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -1.94 Total: 8.88 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.81 Total: -60.89 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.18 Total: -21.91 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.59 -9.68 -48.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391407240.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.790 kcal (2) G-P(sol) polarization free energy of solvation -38.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds