Wall clock time and date at job start Tue Mar 31 2020 20:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47411 * 89.99586 * 9 7 5 11 11 H 1.48497 * 109.47183 * 209.99666 * 9 7 5 12 12 H 1.48503 * 109.46948 * 330.00085 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.47480 * 111.00171 * 265.96874 * 16 15 13 18 18 C 1.53513 * 87.93170 * 221.29782 * 17 16 15 19 19 N 1.46493 * 114.34506 * 272.36508 * 18 17 16 20 20 C 1.34784 * 119.99875 * 248.92376 * 19 18 17 21 21 O 1.21565 * 120.00133 * 0.02562 * 20 19 18 22 22 C 1.47713 * 119.99583 * 179.97438 * 20 19 18 23 23 C 1.41502 * 126.51214 * 179.71319 * 22 20 19 24 24 C 1.35367 * 105.50110 * 179.90645 * 23 22 20 25 25 N 1.35034 * 107.22785 * 0.35305 * 24 23 22 26 26 H 0.96997 * 124.88426 * 179.75436 * 25 24 23 27 27 N 1.28466 * 110.23136 * 359.76817 * 25 24 23 28 28 C 1.47482 * 110.99764 * 169.99672 * 16 15 13 29 29 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 30 30 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 32 32 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 33 33 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 34 34 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 35 35 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 36 36 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 38 38 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 39 39 H 1.08999 * 113.47664 * 336.06792 * 17 16 15 40 40 H 1.08994 * 113.47488 * 106.52987 * 17 16 15 41 41 H 1.08998 * 114.16723 * 139.66940 * 18 17 16 42 42 H 0.96998 * 120.00117 * 68.92512 * 19 18 17 43 43 H 1.07996 * 127.24984 * 0.02562 * 23 22 20 44 44 H 1.08004 * 126.38705 * 180.16082 * 24 23 22 45 45 H 1.08994 * 113.48196 * 253.46980 * 28 16 15 46 46 H 1.09003 * 113.47819 * 23.94188 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 5.9761 0.8743 -4.2601 11 1 6.3923 3.2626 -4.2008 12 1 6.7735 1.9157 -2.2204 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 3.6958 2.0024 4.0530 18 6 3.1733 2.1272 5.4910 19 7 3.1232 3.5006 5.9983 20 6 3.9661 3.8892 6.9756 21 8 4.7682 3.1001 7.4359 22 6 3.9159 5.2742 7.4866 23 6 4.7270 5.8251 8.5069 24 6 4.3272 7.1124 8.6315 25 7 3.3309 7.3096 7.7416 26 1 2.8553 8.1458 7.6176 27 7 3.1034 6.2303 7.0830 28 6 1.8567 1.6375 4.8718 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6876 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 3.6747 3.5148 -4.4447 37 1 0.9443 1.0114 2.5302 38 1 2.6227 0.4186 2.5299 39 1 4.0915 1.0140 3.8190 40 1 4.3727 2.8069 3.7655 41 1 3.6248 1.4256 6.1924 42 1 2.4835 4.1304 5.6308 43 1 5.5031 5.3245 9.0668 44 1 4.7280 7.8443 9.3172 45 1 0.9750 2.1328 5.2783 46 1 1.7616 0.5517 4.8564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001391407240.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:03 Heat of formation + Delta-G solvation = 22.755538 kcal Electronic energy + Delta-G solvation = -28416.578977 eV Core-core repulsion = 24343.404748 eV Total energy + Delta-G solvation = -4073.174229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.57495 -41.77274 -40.45802 -39.55867 -36.86431 -35.14703 -34.86045 -32.90923 -31.88885 -31.60637 -31.05548 -29.00579 -26.97218 -26.53154 -25.10422 -24.45545 -23.68147 -22.64962 -21.33281 -20.82461 -19.91753 -19.42146 -18.64011 -18.22737 -17.92732 -17.39488 -17.14528 -16.80014 -16.56735 -16.51362 -15.92117 -15.58235 -15.33635 -14.96192 -14.86036 -14.62050 -14.59742 -14.24782 -14.11890 -13.76233 -13.68588 -13.52731 -13.25124 -13.11703 -12.71767 -12.66252 -12.52683 -12.32052 -12.15982 -11.98607 -11.87240 -11.79091 -11.71911 -11.36872 -10.65655 -10.56971 -10.51779 -10.16240 -10.08751 -9.75825 -9.39513 -8.23494 -6.38481 0.49268 1.23746 1.33518 1.37034 1.47188 1.87104 1.91857 2.23899 2.27941 2.31740 2.41239 3.05262 3.08476 3.40615 3.45695 3.69458 3.85108 4.04548 4.07280 4.12488 4.22051 4.34437 4.36902 4.46480 4.48982 4.60882 4.66298 4.74230 4.77406 4.79299 4.84429 4.95311 5.00913 5.06260 5.22095 5.29125 5.33915 5.41076 5.45516 5.57927 5.84814 5.95393 6.06729 6.15502 6.42825 6.70335 6.86756 6.87094 7.10654 7.28373 7.58758 8.83433 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012412 B = 0.002488 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.367120 B =11249.297171 C =12387.119518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.608 5.608 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.495 3.505 14 O -0.586 6.586 15 C 0.015 3.985 16 N -0.479 5.479 17 C -0.016 4.016 18 C 0.120 3.880 19 N -0.686 5.686 20 C 0.603 3.397 21 O -0.568 6.568 22 C -0.045 4.045 23 C -0.207 4.207 24 C 0.014 3.986 25 N -0.367 5.367 26 H 0.464 0.536 27 N -0.278 5.278 28 C 0.007 3.993 29 H 0.034 0.966 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.020 0.980 35 H -0.009 1.009 36 H 0.267 0.733 37 H 0.129 0.871 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.122 0.878 42 H 0.415 0.585 43 H 0.166 0.834 44 H 0.234 0.766 45 H 0.103 0.897 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.824 -0.664 26.387 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.199 1.199 13 C 0.283 3.717 14 O -0.465 6.465 15 C -0.116 4.116 16 N -0.202 5.202 17 C -0.146 4.146 18 C 0.014 3.986 19 N -0.335 5.335 20 C 0.389 3.611 21 O -0.445 6.445 22 C -0.205 4.205 23 C -0.235 4.235 24 C -0.131 4.131 25 N -0.084 5.084 26 H 0.312 0.688 27 N -0.116 5.116 28 C -0.121 4.121 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.038 0.962 35 H 0.009 0.991 36 H 0.076 0.924 37 H 0.147 0.853 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.140 0.860 42 H 0.251 0.749 43 H 0.183 0.817 44 H 0.251 0.749 45 H 0.121 0.879 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.173 0.276 25.516 26.036 hybrid contribution 1.304 0.142 -0.728 1.500 sum -3.869 0.418 24.788 25.091 Atomic orbital electron populations 1.22155 0.94584 1.03485 1.01628 1.21744 0.95302 0.81303 1.03883 1.48313 1.64424 1.15154 1.06127 1.18633 0.95146 0.91319 0.80652 1.21704 0.97918 1.31854 1.06393 0.93041 1.25876 1.02425 0.94499 0.96502 1.70059 1.37794 1.34323 1.14767 0.85421 0.78957 0.78284 0.78177 1.18556 1.20646 1.19941 1.21277 0.77330 0.86676 0.86368 1.90638 1.47223 1.20752 1.87897 1.22670 1.05180 0.94834 0.88921 1.68802 1.06990 1.42544 1.01837 1.24472 0.92831 1.02001 0.95287 1.22013 0.98399 0.84101 0.94079 1.45411 1.37865 1.13232 1.37029 1.17196 0.79925 0.85206 0.78730 1.90748 1.39229 1.53907 1.60654 1.21912 1.01390 0.94265 1.02920 1.22075 1.04570 0.95346 1.01553 1.23616 0.93078 0.98643 0.97774 1.43533 1.27556 1.11253 1.26080 0.68811 1.73518 1.23686 0.94516 1.19901 1.24338 0.97804 1.01850 0.88151 0.94631 0.88505 0.91981 0.91238 0.87972 0.96164 0.99073 0.92431 0.85274 0.88377 0.88381 0.92958 0.86016 0.74893 0.81660 0.74933 0.87870 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 10.24 71.98 0.74 -3.12 16 2 C 0.10 2.98 5.93 86.38 0.51 3.50 16 3 N -0.61 -26.20 2.46 -826.16 -2.03 -28.23 16 4 C 0.26 14.76 5.16 85.64 0.44 15.20 16 5 C -0.54 -32.10 9.39 25.60 0.24 -31.86 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 9 Si 0.97 46.22 29.54 68.60 2.03 48.24 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 13 C 0.50 21.18 7.74 87.66 0.68 21.86 16 14 O -0.59 -32.25 16.01 -3.03 -0.05 -32.29 16 15 C 0.02 0.41 3.85 85.56 0.33 0.74 16 16 N -0.48 -13.30 5.82 -932.48 -5.43 -18.73 16 17 C -0.02 -0.43 7.53 83.58 0.63 0.20 16 18 C 0.12 2.68 4.59 45.45 0.21 2.88 16 19 N -0.69 -17.26 5.39 -444.69 -2.40 -19.65 16 20 C 0.60 16.91 7.83 86.75 0.68 17.59 16 21 O -0.57 -18.65 16.52 -3.92 -0.06 -18.71 16 22 C -0.05 -1.10 7.13 42.46 0.30 -0.80 16 23 C -0.21 -3.79 10.81 22.41 0.24 -3.55 16 24 C 0.01 0.14 12.02 83.54 1.00 1.14 16 25 N -0.37 -4.43 6.83 -57.51 -0.39 -4.82 16 26 H 0.46 1.91 8.96 -220.00 -1.97 -0.06 16 27 N -0.28 -5.91 11.92 -48.17 -0.57 -6.48 16 28 C 0.01 0.13 7.45 83.58 0.62 0.75 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.06 1.35 7.22 -2.39 -0.02 1.34 16 32 H 0.07 2.24 8.07 -2.38 -0.02 2.22 16 33 H 0.10 2.23 6.44 -2.39 -0.02 2.21 16 34 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 35 H -0.01 -0.58 7.42 -2.39 -0.02 -0.60 16 36 H 0.27 15.53 8.31 -92.71 -0.77 14.75 16 37 H 0.13 2.66 7.13 -2.39 -0.02 2.64 16 38 H 0.10 2.12 6.56 -2.39 -0.02 2.11 16 39 H 0.10 2.26 7.42 -2.39 -0.02 2.24 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.12 2.54 7.45 -2.39 -0.02 2.52 16 42 H 0.41 10.42 8.49 -92.71 -0.79 9.63 16 43 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 44 H 0.23 -0.13 8.06 -2.91 -0.02 -0.16 16 45 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.12 1.28 7.91 -2.39 -0.02 1.26 16 Total: -1.00 -92.21 390.15 -3.26 -95.47 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -1.73 Total: 17.41 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 7.09 Total: 25.35 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -10.54 Total: -135.47 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.11 Total: -51.00 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -92.21 -3.26 -95.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391407240.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.226 kcal (2) G-P(sol) polarization free energy of solvation -92.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds