Wall clock time and date at job start Tue Mar 31 2020 19:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47377 * 2 1 4 4 C 1.46829 * 124.33571 * 269.98446 * 3 2 1 5 5 C 1.54483 * 105.44623 * 196.99747 * 4 3 2 6 6 H 1.08997 * 110.96421 * 92.77192 * 5 4 3 7 7 N 1.46494 * 110.96784 * 216.49680 * 5 4 3 8 8 C 1.34774 * 119.99595 * 201.91044 * 7 5 4 9 9 O 1.21592 * 120.00282 * 0.02562 * 8 7 5 10 10 N 1.34778 * 119.99979 * 179.97438 * 8 7 5 11 11 C 1.40201 * 120.00178 * 180.02562 * 10 8 7 12 12 C 1.40400 * 125.96787 * 359.97438 * 11 10 8 13 13 C 1.35251 * 107.86253 * 179.97438 * 12 11 10 14 14 C 1.50706 * 126.06653 * 179.97438 * 13 12 11 15 15 N 1.34956 * 107.85957 * 0.23007 * 13 12 11 16 16 C 1.46501 * 125.97431 * 179.77062 * 15 13 12 17 17 C 1.50699 * 109.47273 * 90.00282 * 16 15 13 18 18 H 1.07998 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99975 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99782 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00208 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46876 * 90.00220 * 21 19 17 23 23 H 1.48497 * 109.46944 * 210.00355 * 21 19 17 24 24 H 1.48500 * 109.46785 * 330.00259 * 21 19 17 25 25 N 1.31202 * 125.97171 * 179.97438 * 11 10 8 26 26 C 1.54630 * 101.79674 * 334.63378 * 5 4 3 27 27 C 1.34426 * 124.35085 * 90.02775 * 3 2 1 28 28 O 1.21279 * 124.93848 * 359.55288 * 27 3 2 29 29 H 1.09008 * 109.47070 * 299.99912 * 1 2 3 30 30 H 1.09001 * 109.47188 * 59.99561 * 1 2 3 31 31 H 1.08999 * 109.47577 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47070 * 240.00088 * 2 1 3 33 33 H 1.09005 * 109.47630 * 120.00222 * 2 1 3 34 34 H 1.09004 * 110.23274 * 78.01918 * 4 3 2 35 35 H 1.08990 * 110.28361 * 316.00789 * 4 3 2 36 36 H 0.96998 * 120.00405 * 21.91063 * 7 5 4 37 37 H 0.96998 * 120.00020 * 0.02562 * 10 8 7 38 38 H 1.07992 * 126.07300 * 0.02562 * 12 11 10 39 39 H 1.08999 * 109.46995 * 90.02677 * 14 13 12 40 40 H 1.08994 * 109.46790 * 210.02364 * 14 13 12 41 41 H 1.08997 * 109.47305 * 330.02805 * 14 13 12 42 42 H 1.09002 * 109.47069 * 209.99934 * 16 15 13 43 43 H 1.08994 * 109.47193 * 329.99817 * 16 15 13 44 44 H 0.97003 * 120.00026 * 179.97438 * 20 19 17 45 45 H 1.08999 * 110.48513 * 143.45799 * 26 5 4 46 46 H 1.09001 * 110.48536 * 266.09622 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2947 2.1618 -1.2124 5 6 3.1744 3.3441 -0.7489 6 1 4.2331 3.1038 -0.8455 7 7 2.8465 4.5640 -1.4909 8 6 3.7463 5.5638 -1.5750 9 8 4.8303 5.4532 -1.0355 10 7 3.4449 6.6859 -2.2581 11 6 4.3811 7.7258 -2.3461 12 6 5.6630 7.7319 -1.7736 13 6 6.2512 8.9092 -2.0857 14 6 7.6347 9.3456 -1.6775 15 7 5.3770 9.6261 -2.8227 16 6 5.6068 10.9664 -3.3675 17 6 6.2160 10.8527 -4.7412 18 1 6.4127 9.8793 -5.1658 19 6 6.5232 11.9913 -5.4555 20 7 7.0553 11.8920 -6.6541 21 14 6.1837 13.6749 -4.7209 22 1 7.3737 14.1316 -3.9590 23 1 5.8929 14.6409 -5.8106 24 1 5.0146 13.5904 -3.8091 25 7 4.2123 8.8633 -2.9778 26 6 2.7699 3.4752 0.7378 27 6 2.2717 2.0961 1.1098 28 8 2.1219 1.6941 2.2442 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 1.3640 2.5305 -1.6437 35 1 2.8329 1.5534 -1.9391 36 1 1.9819 4.6521 -1.9216 37 1 2.5803 6.7740 -2.6888 38 1 6.1020 6.9373 -1.1887 39 1 8.3529 9.0321 -2.4352 40 1 7.6595 10.4309 -1.5804 41 1 7.8925 8.8892 -0.7218 42 1 4.6583 11.4993 -3.4338 43 1 6.2857 11.5131 -2.7131 44 1 7.2712 12.6930 -7.1569 45 1 3.6334 3.7456 1.3456 46 1 1.9751 4.2120 0.8534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414435908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:34 Heat of formation + Delta-G solvation = 28.180980 kcal Electronic energy + Delta-G solvation = -28075.709919 eV Core-core repulsion = 24002.770955 eV Total energy + Delta-G solvation = -4072.938964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.19104 -40.70122 -39.59623 -37.03687 -35.42351 -34.81031 -33.42991 -32.74512 -31.47108 -31.08983 -29.42745 -27.96444 -27.01404 -26.41785 -24.02544 -23.17419 -22.26671 -21.39225 -20.24143 -19.78771 -19.60051 -18.01241 -17.34881 -17.13234 -16.80392 -16.32997 -15.92001 -15.56740 -15.39806 -14.76852 -14.62937 -14.48087 -14.28990 -14.06118 -13.95856 -13.77175 -13.57447 -13.23881 -12.82582 -12.60372 -12.49240 -12.41754 -12.36246 -12.22719 -11.99109 -11.66632 -11.57759 -11.55261 -11.27724 -10.81316 -10.61236 -10.36042 -10.13479 -9.98746 -9.79496 -9.61220 -9.43763 -9.23362 -8.79740 -8.01842 -7.48463 -6.27624 -4.30684 2.07530 2.21429 2.49233 2.57388 2.96594 3.13111 3.20849 3.22176 3.39355 3.69712 3.86137 4.02169 4.16475 4.20333 4.42996 4.47503 4.60471 4.71767 4.87152 4.94884 5.00729 5.05764 5.21998 5.26989 5.35655 5.43820 5.52918 5.59565 5.68462 5.79870 6.02344 6.03198 6.05928 6.12852 6.32472 6.41105 6.45765 6.57658 6.63647 6.73927 6.94170 7.27641 7.40476 7.75926 7.78453 7.84449 8.29870 8.43403 8.55999 8.77757 9.27612 10.84836 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031392 B = 0.001917 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.736372 B =14604.395153 C =14945.692817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.098 3.902 5 C 0.159 3.841 6 H 0.117 0.883 7 N -0.735 5.735 8 C 0.716 3.284 9 O -0.560 6.560 10 N -0.641 5.641 11 C 0.285 3.715 12 C -0.286 4.286 13 C 0.095 3.905 14 C -0.085 4.085 15 N -0.317 5.317 16 C 0.232 3.768 17 C -0.540 4.540 18 H 0.081 0.919 19 C 0.079 3.921 20 N -0.886 5.886 21 Si 0.872 3.128 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.263 1.263 25 N -0.320 5.320 26 C -0.170 4.170 27 C 0.522 3.478 28 O -0.528 6.528 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.400 0.600 37 H 0.407 0.593 38 H 0.163 0.837 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.269 0.731 45 H 0.111 0.889 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.125 -19.957 11.080 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.026 4.026 5 C 0.052 3.948 6 H 0.135 0.865 7 N -0.392 5.392 8 C 0.415 3.585 9 O -0.435 6.435 10 N -0.291 5.291 11 C 0.031 3.969 12 C -0.317 4.317 13 C -0.036 4.036 14 C -0.144 4.144 15 N -0.099 5.099 16 C 0.113 3.887 17 C -0.578 4.578 18 H 0.099 0.901 19 C -0.125 4.125 20 N -0.523 5.523 21 Si 0.698 3.302 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.188 1.188 25 N -0.150 5.150 26 C -0.212 4.212 27 C 0.310 3.690 28 O -0.404 6.404 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.235 0.765 37 H 0.242 0.758 38 H 0.180 0.820 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.130 0.870 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.933 -19.427 11.267 24.978 hybrid contribution -0.652 0.589 -0.077 0.882 sum -11.585 -18.838 11.190 24.785 Atomic orbital electron populations 1.22166 0.95668 1.02505 1.02521 1.21380 0.94445 0.80808 1.03395 1.48341 1.66384 1.13987 1.06854 1.22303 0.99717 0.92772 0.87798 1.21545 1.01068 0.82748 0.89425 0.86488 1.44882 1.18791 1.16704 1.58848 1.15547 0.84001 0.79455 0.79454 1.90899 1.22117 1.79989 1.50449 1.41339 1.18038 1.14382 1.55350 1.18623 0.90161 0.88775 0.99310 1.21244 0.94978 1.00534 1.14921 1.21067 0.94198 0.92587 0.95749 1.20356 0.90470 1.01899 1.01628 1.48490 1.08465 1.14787 1.38193 1.19989 0.98156 0.75081 0.95507 1.21173 1.42198 0.95839 0.98636 0.90114 1.24810 0.94178 0.98919 0.94642 1.69875 1.41596 1.29687 1.11184 0.86907 0.79488 0.84206 0.79571 1.19618 1.20511 1.18801 1.77253 1.08028 1.03792 1.25944 1.22904 1.04491 0.95680 0.98109 1.20879 0.76424 0.87366 0.84346 1.90736 1.53379 1.75149 1.21115 0.92199 0.92352 0.91301 0.90125 0.89830 0.90415 0.89094 0.76528 0.75773 0.81990 0.90072 0.91135 0.90620 0.93238 0.93651 0.92130 0.87020 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.24 37.15 0.38 -0.46 16 2 C 0.12 0.66 6.65 -4.05 -0.03 0.63 16 3 N -0.62 -4.18 2.93 -172.36 -0.51 -4.68 16 4 C 0.10 0.43 7.08 -3.08 -0.02 0.41 16 5 C 0.16 1.07 3.48 -66.30 -0.23 0.84 16 6 H 0.12 0.95 7.63 -51.93 -0.40 0.55 16 7 N -0.74 -5.39 5.17 -57.08 -0.30 -5.68 16 8 C 0.72 9.00 8.53 -86.92 -0.74 8.26 16 9 O -0.56 -9.04 13.16 5.29 0.07 -8.97 16 10 N -0.64 -8.86 5.46 -15.51 -0.08 -8.94 16 11 C 0.29 5.45 8.11 -154.36 -1.25 4.20 16 12 C -0.29 -5.60 9.52 -39.83 -0.38 -5.98 16 13 C 0.09 1.91 6.93 -82.28 -0.57 1.34 16 14 C -0.09 -1.39 10.11 36.01 0.36 -1.02 16 15 N -0.32 -7.18 3.59 -58.33 -0.21 -7.39 16 16 C 0.23 5.48 5.06 -5.19 -0.03 5.45 16 17 C -0.54 -14.91 9.94 -34.44 -0.34 -15.26 16 18 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 19 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 20 N -0.89 -26.04 13.96 55.43 0.77 -25.27 16 21 Si 0.87 19.88 27.47 -169.99 -4.67 15.21 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 25 N -0.32 -7.02 12.59 31.44 0.40 -6.62 16 26 C -0.17 -1.37 6.59 -26.74 -0.18 -1.55 16 27 C 0.52 5.08 8.02 -10.86 -0.09 4.99 16 28 O -0.53 -7.31 17.59 5.56 0.10 -7.21 16 29 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.27 8.14 -51.92 -0.42 -0.16 16 33 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16 34 H 0.08 0.22 7.78 -51.93 -0.40 -0.18 16 35 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.40 1.68 8.41 -40.82 -0.34 1.33 16 37 H 0.41 4.29 8.84 -40.82 -0.36 3.93 16 38 H 0.16 3.10 5.91 -52.49 -0.31 2.79 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.07 1.11 7.06 -51.93 -0.37 0.74 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 1.18 7.20 -51.93 -0.37 0.80 16 43 H 0.05 0.99 6.46 -51.93 -0.34 0.65 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.11 0.82 8.08 -51.93 -0.42 0.40 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -36.52 385.20 -8.52 -45.04 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.69 Total: 4.79 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -3.21 Total: 3.93 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.07 Total: -58.59 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.17 Total: -16.18 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.67 Total: 15.21 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.52 -8.52 -45.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414435908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.222 kcal (2) G-P(sol) polarization free energy of solvation -36.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds