Wall clock time and date at job start Tue Mar 31 2020 19:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47377 * 2 1 4 4 C 1.46829 * 124.33571 * 269.98446 * 3 2 1 5 5 C 1.54483 * 105.44623 * 196.99747 * 4 3 2 6 6 H 1.08997 * 110.96421 * 92.77192 * 5 4 3 7 7 N 1.46494 * 110.96784 * 216.49680 * 5 4 3 8 8 C 1.34774 * 119.99595 * 201.91044 * 7 5 4 9 9 O 1.21592 * 120.00282 * 0.02562 * 8 7 5 10 10 N 1.34778 * 119.99979 * 179.97438 * 8 7 5 11 11 C 1.40201 * 120.00178 * 180.02562 * 10 8 7 12 12 C 1.40400 * 125.96787 * 359.97438 * 11 10 8 13 13 C 1.35251 * 107.86253 * 179.97438 * 12 11 10 14 14 C 1.50706 * 126.06653 * 179.97438 * 13 12 11 15 15 N 1.34956 * 107.85957 * 0.23007 * 13 12 11 16 16 C 1.46501 * 125.97431 * 179.77062 * 15 13 12 17 17 C 1.50699 * 109.47273 * 90.00282 * 16 15 13 18 18 H 1.07998 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99975 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99782 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00208 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46876 * 90.00220 * 21 19 17 23 23 H 1.48497 * 109.46944 * 210.00355 * 21 19 17 24 24 H 1.48500 * 109.46785 * 330.00259 * 21 19 17 25 25 N 1.31202 * 125.97171 * 179.97438 * 11 10 8 26 26 C 1.54630 * 101.79674 * 334.63378 * 5 4 3 27 27 C 1.34426 * 124.35085 * 90.02775 * 3 2 1 28 28 O 1.21279 * 124.93848 * 359.55288 * 27 3 2 29 29 H 1.09008 * 109.47070 * 299.99912 * 1 2 3 30 30 H 1.09001 * 109.47188 * 59.99561 * 1 2 3 31 31 H 1.08999 * 109.47577 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47070 * 240.00088 * 2 1 3 33 33 H 1.09005 * 109.47630 * 120.00222 * 2 1 3 34 34 H 1.09004 * 110.23274 * 78.01918 * 4 3 2 35 35 H 1.08990 * 110.28361 * 316.00789 * 4 3 2 36 36 H 0.96998 * 120.00405 * 21.91063 * 7 5 4 37 37 H 0.96998 * 120.00020 * 0.02562 * 10 8 7 38 38 H 1.07992 * 126.07300 * 0.02562 * 12 11 10 39 39 H 1.08999 * 109.46995 * 90.02677 * 14 13 12 40 40 H 1.08994 * 109.46790 * 210.02364 * 14 13 12 41 41 H 1.08997 * 109.47305 * 330.02805 * 14 13 12 42 42 H 1.09002 * 109.47069 * 209.99934 * 16 15 13 43 43 H 1.08994 * 109.47193 * 329.99817 * 16 15 13 44 44 H 0.97003 * 120.00026 * 179.97438 * 20 19 17 45 45 H 1.08999 * 110.48513 * 143.45799 * 26 5 4 46 46 H 1.09001 * 110.48536 * 266.09622 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2947 2.1618 -1.2124 5 6 3.1744 3.3441 -0.7489 6 1 4.2331 3.1038 -0.8455 7 7 2.8465 4.5640 -1.4909 8 6 3.7463 5.5638 -1.5750 9 8 4.8303 5.4532 -1.0355 10 7 3.4449 6.6859 -2.2581 11 6 4.3811 7.7258 -2.3461 12 6 5.6630 7.7319 -1.7736 13 6 6.2512 8.9092 -2.0857 14 6 7.6347 9.3456 -1.6775 15 7 5.3770 9.6261 -2.8227 16 6 5.6068 10.9664 -3.3675 17 6 6.2160 10.8527 -4.7412 18 1 6.4127 9.8793 -5.1658 19 6 6.5232 11.9913 -5.4555 20 7 7.0553 11.8920 -6.6541 21 14 6.1837 13.6749 -4.7209 22 1 7.3737 14.1316 -3.9590 23 1 5.8929 14.6409 -5.8106 24 1 5.0146 13.5904 -3.8091 25 7 4.2123 8.8633 -2.9778 26 6 2.7699 3.4752 0.7378 27 6 2.2717 2.0961 1.1098 28 8 2.1219 1.6941 2.2442 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 1.3640 2.5305 -1.6437 35 1 2.8329 1.5534 -1.9391 36 1 1.9819 4.6521 -1.9216 37 1 2.5803 6.7740 -2.6888 38 1 6.1020 6.9373 -1.1887 39 1 8.3529 9.0321 -2.4352 40 1 7.6595 10.4309 -1.5804 41 1 7.8925 8.8892 -0.7218 42 1 4.6583 11.4993 -3.4338 43 1 6.2857 11.5131 -2.7131 44 1 7.2712 12.6930 -7.1569 45 1 3.6334 3.7456 1.3456 46 1 1.9751 4.2120 0.8534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414435908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:33 Heat of formation + Delta-G solvation = 1.147254 kcal Electronic energy + Delta-G solvation = -28076.882189 eV Core-core repulsion = 24002.770955 eV Total energy + Delta-G solvation = -4074.111234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.34650 -41.71311 -40.68263 -37.85870 -36.41360 -35.87586 -35.22351 -33.70917 -32.80998 -32.75604 -30.06324 -29.02230 -28.33014 -27.85239 -24.89514 -24.33299 -23.49495 -22.25130 -21.43922 -21.10970 -20.44309 -19.21178 -19.15610 -18.12150 -17.59256 -17.41504 -17.05789 -16.68018 -16.54848 -16.19643 -15.81571 -15.47758 -15.40953 -14.94385 -14.81782 -14.66359 -14.49845 -14.44303 -14.22948 -13.87466 -13.74235 -13.61833 -13.27286 -13.22338 -12.98672 -12.84897 -12.76237 -12.51574 -12.32590 -12.24234 -12.00497 -11.82398 -11.57558 -11.40452 -11.21482 -11.06138 -10.87208 -10.25453 -9.79950 -9.55362 -9.02439 -8.38378 -6.49078 0.98882 1.06617 1.36778 1.39335 1.46579 1.49239 1.66740 1.90158 2.10435 2.28463 2.39007 2.93907 3.02920 3.32691 3.49101 3.79239 3.86987 3.99888 4.14215 4.14938 4.27599 4.42110 4.50232 4.54929 4.55912 4.60496 4.70846 4.81223 4.82568 4.83549 4.84537 4.88136 4.98622 5.03850 5.14483 5.20802 5.26186 5.29213 5.42522 5.55031 5.85827 5.92139 6.02246 6.04586 6.39877 6.54476 6.72544 7.05893 7.12628 7.14970 7.42483 8.78126 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031392 B = 0.001917 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.736372 B =14604.395153 C =14945.692817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.613 5.613 4 C 0.104 3.896 5 C 0.162 3.838 6 H 0.106 0.894 7 N -0.707 5.707 8 C 0.716 3.284 9 O -0.595 6.595 10 N -0.633 5.633 11 C 0.295 3.705 12 C -0.296 4.296 13 C 0.088 3.912 14 C -0.085 4.085 15 N -0.344 5.344 16 C 0.241 3.759 17 C -0.548 4.548 18 H 0.024 0.976 19 C 0.021 3.979 20 N -0.937 5.937 21 Si 0.950 3.050 22 H -0.252 1.252 23 H -0.279 1.279 24 H -0.244 1.244 25 N -0.357 5.357 26 C -0.166 4.166 27 C 0.516 3.484 28 O -0.580 6.580 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.420 0.580 37 H 0.423 0.577 38 H 0.168 0.832 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.273 0.727 45 H 0.096 0.904 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.345 -20.052 11.481 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.346 5.346 4 C -0.019 4.019 5 C 0.055 3.945 6 H 0.124 0.876 7 N -0.365 5.365 8 C 0.415 3.585 9 O -0.472 6.472 10 N -0.285 5.285 11 C 0.040 3.960 12 C -0.327 4.327 13 C -0.042 4.042 14 C -0.143 4.143 15 N -0.126 5.126 16 C 0.121 3.879 17 C -0.587 4.587 18 H 0.043 0.957 19 C -0.179 4.179 20 N -0.576 5.576 21 Si 0.771 3.229 22 H -0.176 1.176 23 H -0.204 1.204 24 H -0.168 1.168 25 N -0.187 5.187 26 C -0.208 4.208 27 C 0.304 3.696 28 O -0.460 6.460 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.134 0.866 36 H 0.259 0.741 37 H 0.261 0.739 38 H 0.185 0.815 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.114 0.886 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.216 -19.589 11.633 25.851 hybrid contribution -0.293 0.385 -0.239 0.540 sum -12.509 -19.203 11.394 25.594 Atomic orbital electron populations 1.22119 0.95092 1.03260 1.01826 1.21566 0.94890 0.80034 1.04073 1.48459 1.64926 1.14455 1.06777 1.22470 1.00793 0.91666 0.86958 1.21546 1.01226 0.83109 0.88577 0.87583 1.44614 1.18630 1.15391 1.57842 1.15706 0.84216 0.79705 0.78844 1.90875 1.23984 1.80617 1.51763 1.41328 1.17916 1.13576 1.55693 1.18921 0.90855 0.88871 0.97373 1.21438 0.95417 1.00552 1.15311 1.21745 0.95243 0.92542 0.94663 1.20501 0.88194 1.02587 1.02995 1.48393 1.09521 1.15008 1.39719 1.19755 0.98074 0.76374 0.93653 1.21253 1.42853 0.93684 1.00874 0.95728 1.25824 0.93419 1.03807 0.94808 1.70036 1.43085 1.31332 1.13121 0.85693 0.80618 0.77574 0.79038 1.17564 1.20443 1.16758 1.77162 1.08671 1.05064 1.27827 1.22832 1.04058 0.95125 0.98743 1.21112 0.76173 0.88051 0.84275 1.90704 1.55844 1.76207 1.23207 0.94717 0.91071 0.89928 0.87040 0.91579 0.87565 0.86619 0.74123 0.73878 0.81473 0.90457 0.90473 0.87449 0.93263 0.91103 0.91792 0.88595 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 10.24 71.98 0.74 -0.57 16 2 C 0.12 1.02 6.65 86.38 0.57 1.60 16 3 N -0.61 -7.04 2.93 -817.83 -2.40 -9.44 16 4 C 0.10 0.54 7.08 86.82 0.61 1.16 16 5 C 0.16 1.84 3.48 46.05 0.16 2.00 16 6 H 0.11 1.55 7.63 -2.39 -0.02 1.54 16 7 N -0.71 -8.49 5.17 -452.77 -2.34 -10.83 16 8 C 0.72 16.83 8.53 179.05 1.53 18.36 16 9 O -0.60 -18.72 13.16 -4.00 -0.05 -18.77 16 10 N -0.63 -16.63 5.46 -321.23 -1.75 -18.38 16 11 C 0.30 11.18 8.11 133.31 1.08 12.26 16 12 C -0.30 -11.52 9.52 22.11 0.21 -11.31 16 13 C 0.09 3.52 6.93 41.39 0.29 3.80 16 14 C -0.08 -2.66 10.11 71.24 0.72 -1.94 16 15 N -0.34 -15.64 3.59 -338.44 -1.22 -16.85 16 16 C 0.24 11.32 5.06 85.63 0.43 11.76 16 17 C -0.55 -31.08 9.94 25.60 0.25 -30.83 16 18 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 19 C 0.02 1.17 5.47 84.65 0.46 1.63 16 20 N -0.94 -56.48 13.96 21.45 0.30 -56.18 16 21 Si 0.95 40.31 27.47 68.60 1.88 42.20 16 22 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 25 N -0.36 -15.74 12.59 -54.44 -0.69 -16.42 16 26 C -0.17 -2.55 6.59 30.59 0.20 -2.35 16 27 C 0.52 9.85 8.02 87.90 0.71 10.56 16 28 O -0.58 -16.66 17.59 -3.03 -0.05 -16.71 16 29 H 0.03 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.07 0.84 7.93 -2.38 -0.02 0.83 16 34 H 0.11 0.06 7.78 -2.38 -0.02 0.05 16 35 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.42 1.95 8.41 -92.71 -0.78 1.17 16 37 H 0.42 8.13 8.84 -92.71 -0.82 7.31 16 38 H 0.17 6.32 5.91 -2.91 -0.02 6.30 16 39 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.08 2.30 7.06 -2.39 -0.02 2.28 16 41 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.05 2.29 7.20 -2.39 -0.02 2.28 16 43 H 0.07 2.94 6.46 -2.39 -0.02 2.93 16 44 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.12 1.61 8.08 -2.39 -0.02 1.59 16 Total: -1.00 -84.59 385.20 1.03 -83.57 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.63 Total: 21.69 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 7.97 Total: 16.13 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -8.10 Total: -128.10 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.11 Total: -35.48 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.88 Total: 42.20 kcal Total: -84.59 1.03 -83.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414435908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.714 kcal (2) G-P(sol) polarization free energy of solvation -84.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds