Wall clock time and date at job start Tue Mar 31 2020 20:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47303 * 119.99759 * 9 7 5 12 12 H 1.48495 * 109.47340 * 239.99921 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.47480 * 111.00171 * 265.96874 * 16 15 13 18 18 C 1.53513 * 87.93170 * 221.29782 * 17 16 15 19 19 N 1.46493 * 114.34506 * 272.36508 * 18 17 16 20 20 C 1.34784 * 119.99875 * 248.92376 * 19 18 17 21 21 O 1.21602 * 120.00147 * 0.02562 * 20 19 18 22 22 C 1.47408 * 119.99594 * 179.97438 * 20 19 18 23 23 N 1.31610 * 125.86877 * 359.68957 * 22 20 19 24 24 C 1.33102 * 109.09643 * 179.89131 * 23 22 20 25 25 C 1.35566 * 108.35135 * 0.37527 * 24 23 22 26 26 N 1.35408 * 107.15789 * 359.77639 * 25 24 23 27 27 H 0.96992 * 126.43439 * 180.02562 * 26 25 24 28 28 C 1.47482 * 110.99764 * 169.99672 * 16 15 13 29 29 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 30 30 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 32 32 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 33 33 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 34 34 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 35 35 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 36 36 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 38 38 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 39 39 H 1.08999 * 113.47664 * 336.06792 * 17 16 15 40 40 H 1.08994 * 113.47488 * 106.52987 * 17 16 15 41 41 H 1.08998 * 114.16723 * 139.66940 * 18 17 16 42 42 H 0.96998 * 120.00117 * 68.92512 * 19 18 17 43 43 H 1.08006 * 125.82526 * 180.17674 * 24 23 22 44 44 H 1.07991 * 126.41770 * 179.79385 * 25 24 23 45 45 H 1.08994 * 113.48196 * 253.46980 * 28 16 15 46 46 H 1.09003 * 113.47819 * 23.94188 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 3.6958 2.0024 4.0530 18 6 3.1733 2.1272 5.4910 19 7 3.1232 3.5006 5.9983 20 6 3.9661 3.8892 6.9756 21 8 4.7684 3.0999 7.4360 22 6 3.9160 5.2714 7.4856 23 7 3.1027 6.2183 7.0684 24 6 3.3413 7.3319 7.7572 25 6 4.3448 7.0844 8.6345 26 7 4.7104 5.7912 8.4687 27 1 5.4052 5.3220 8.9564 28 6 1.8567 1.6375 4.8718 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6876 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 3.6747 3.5148 -4.4447 37 1 0.9443 1.0114 2.5302 38 1 2.6227 0.4186 2.5299 39 1 4.0915 1.0140 3.8190 40 1 4.3727 2.8069 3.7655 41 1 3.6248 1.4256 6.1924 42 1 2.4835 4.1304 5.6308 43 1 2.8258 8.2732 7.6355 44 1 4.7722 7.7870 9.3345 45 1 0.9750 2.1328 5.2783 46 1 1.7616 0.5517 4.8564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001438048597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:12 Heat of formation + Delta-G solvation = 39.664874 kcal Electronic energy + Delta-G solvation = -28440.925430 eV Core-core repulsion = 24368.484445 eV Total energy + Delta-G solvation = -4072.440985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.52737 -40.77292 -39.15841 -38.33722 -35.17770 -34.31693 -32.94607 -32.76198 -30.76432 -30.06308 -29.59205 -27.16718 -26.07482 -25.12107 -23.73514 -22.97969 -22.16368 -21.89303 -20.94831 -19.92423 -19.13567 -18.31937 -16.94312 -16.60883 -16.32253 -16.29111 -15.97263 -15.82664 -15.31710 -14.93534 -14.65524 -14.41039 -14.25143 -14.08444 -13.97200 -13.64978 -13.48443 -13.27553 -12.91438 -12.63153 -12.32163 -11.99274 -11.73857 -11.47024 -11.40575 -11.17101 -10.90166 -10.85956 -10.69193 -10.63692 -10.61563 -10.57613 -10.50731 -10.09612 -9.57896 -9.35552 -9.09662 -8.90859 -8.55883 -8.40772 -7.59021 -6.01232 -4.05679 1.03510 2.22434 2.28749 3.12243 3.18684 3.31208 3.38738 3.41930 3.52114 3.69049 4.00355 4.14618 4.33560 4.48069 4.60587 4.67270 4.89208 5.02144 5.02510 5.11082 5.21203 5.27991 5.33090 5.35206 5.41193 5.49272 5.51075 5.60447 5.65228 5.79156 5.87356 6.02525 6.18944 6.23718 6.24882 6.30393 6.49188 6.74453 6.83166 7.14622 7.17036 7.50575 7.52989 7.61732 7.86765 7.96063 8.27742 8.50149 8.95158 9.21008 9.59564 11.06829 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.002492 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.298893 B =11233.675718 C =12378.865937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.602 5.602 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.520 6.520 15 C -0.001 4.001 16 N -0.444 5.444 17 C -0.010 4.010 18 C 0.117 3.883 19 N -0.673 5.673 20 C 0.611 3.389 21 O -0.546 6.546 22 C 0.144 3.856 23 N -0.437 5.437 24 C -0.026 4.026 25 C -0.024 4.024 26 N -0.525 5.525 27 H 0.430 0.570 28 C -0.011 4.011 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.422 0.578 43 H 0.180 0.820 44 H 0.187 0.813 45 H 0.094 0.906 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 -1.297 24.896 25.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.395 6.395 15 C -0.133 4.133 16 N -0.166 5.166 17 C -0.140 4.140 18 C 0.011 3.989 19 N -0.324 5.324 20 C 0.395 3.605 21 O -0.423 6.423 22 C -0.117 4.117 23 N -0.160 5.160 24 C -0.179 4.179 25 C -0.164 4.164 26 N -0.127 5.127 27 H 0.269 0.731 28 C -0.141 4.141 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.132 0.868 42 H 0.260 0.740 43 H 0.197 0.803 44 H 0.204 0.796 45 H 0.112 0.888 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.201 -0.633 24.105 24.325 hybrid contribution 1.806 -0.728 0.288 1.968 sum -1.395 -1.361 24.393 24.471 Atomic orbital electron populations 1.22228 0.96878 1.01283 1.02362 1.21380 0.93446 0.84442 1.02429 1.48264 1.64412 1.13143 1.07721 1.19236 0.96124 0.93668 0.78135 1.21470 0.96969 1.31679 1.06099 0.92572 1.24936 0.97783 0.94988 0.96462 1.69945 1.35541 1.33607 1.14305 0.86461 0.84762 0.78043 0.78255 1.19874 1.21000 1.20889 1.20018 0.79081 0.87120 0.84508 1.90682 1.44361 1.17627 1.86784 1.22734 1.02738 0.95073 0.92752 1.68881 1.06349 1.41133 1.00233 1.24432 0.93575 1.02686 0.93339 1.22015 0.97776 0.83676 0.95429 1.45136 1.37673 1.13024 1.36538 1.16426 0.80966 0.83484 0.79574 1.90835 1.38352 1.53140 1.59937 1.22592 0.96573 0.96416 0.96140 1.70258 1.21811 0.99650 1.24253 1.22561 0.99982 0.98337 0.97049 1.23023 1.01953 0.86165 1.05232 1.42949 1.29555 1.10753 1.29477 0.73068 1.24298 0.98432 0.99896 0.91477 0.91994 0.92278 0.93119 0.90037 0.92103 0.95125 0.93929 0.92815 0.88533 0.91282 0.90083 0.88725 0.86771 0.74030 0.80275 0.79553 0.88801 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.11 1.69 5.93 -4.05 -0.02 1.67 16 3 N -0.60 -12.73 2.46 -175.06 -0.43 -13.16 16 4 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 5 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.51 10.65 7.74 -10.98 -0.09 10.57 16 14 O -0.52 -13.51 16.01 5.56 0.09 -13.42 16 15 C 0.00 -0.02 3.85 -4.97 -0.02 -0.04 16 16 N -0.44 -6.28 5.82 -246.09 -1.43 -7.71 16 17 C -0.01 -0.14 7.53 -7.54 -0.06 -0.19 16 18 C 0.12 1.28 4.59 -67.72 -0.31 0.96 16 19 N -0.67 -7.94 5.39 -54.62 -0.29 -8.23 16 20 C 0.61 7.69 7.81 -12.52 -0.10 7.59 16 21 O -0.55 -7.79 16.69 5.28 0.09 -7.70 16 22 C 0.14 1.65 7.95 -154.52 -1.23 0.42 16 23 N -0.44 -5.22 10.89 -11.25 -0.12 -5.34 16 24 C -0.03 -0.23 11.85 -17.96 -0.21 -0.44 16 25 C -0.02 -0.16 12.00 -16.93 -0.20 -0.36 16 26 N -0.53 -4.31 6.14 -10.78 -0.07 -4.37 16 27 H 0.43 2.58 8.96 -40.82 -0.37 2.21 16 28 C -0.01 -0.11 7.45 -7.54 -0.06 -0.17 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.10 1.19 7.13 -51.93 -0.37 0.82 16 38 H 0.07 0.87 6.56 -51.93 -0.34 0.53 16 39 H 0.08 0.95 7.42 -51.93 -0.39 0.56 16 40 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.11 1.16 7.45 -51.93 -0.39 0.77 16 42 H 0.42 5.10 8.44 -40.82 -0.34 4.75 16 43 H 0.18 1.10 8.06 -52.48 -0.42 0.67 16 44 H 0.19 0.44 8.06 -52.49 -0.42 0.01 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -37.92 390.40 -9.55 -47.47 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.62 Total: 4.66 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -2.36 Total: 11.00 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: -1.61 Total: -65.05 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.18 Total: -21.12 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.92 -9.55 -47.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438048597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.133 kcal (2) G-P(sol) polarization free energy of solvation -37.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds