Wall clock time and date at job start Tue Mar 31 2020 19:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47289 * 2 1 4 4 C 1.35851 * 126.13103 * 89.97318 * 3 2 1 5 5 N 1.30178 * 109.00061 * 179.97438 * 4 3 2 6 6 C 1.35760 * 108.86670 * 0.02562 * 5 4 3 7 7 C 1.47326 * 126.23451 * 180.02562 * 6 5 4 8 8 O 1.21624 * 119.99973 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99953 * 0.02562 * 7 6 5 10 10 C 1.47419 * 125.64841 * 0.02562 * 9 7 6 11 11 C 1.54916 * 104.83208 * 204.09607 * 10 9 7 12 12 C 1.55151 * 101.57865 * 322.99308 * 11 10 9 13 13 H 1.09002 * 110.71881 * 277.13710 * 12 11 10 14 14 N 1.46903 * 110.72046 * 153.86845 * 12 11 10 15 15 C 1.46900 * 111.00004 * 154.99697 * 14 12 11 16 16 C 1.50703 * 109.46929 * 179.97438 * 15 14 12 17 17 O 1.21290 * 120.00050 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00151 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00445 * 180.02562 * 18 16 15 20 20 H 1.08006 * 119.99680 * 0.02562 * 19 18 16 21 21 C 1.38939 * 120.00513 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99912 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00524 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.46682 * 59.99697 * 23 21 19 25 25 H 1.48492 * 109.47336 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46747 * 300.00193 * 23 21 19 27 27 C 1.47024 * 125.64367 * 179.71972 * 9 7 6 28 28 C 1.35374 * 126.13786 * 270.29031 * 3 2 1 29 29 H 1.08998 * 109.47246 * 300.00062 * 1 2 3 30 30 H 1.09004 * 109.46706 * 59.99668 * 1 2 3 31 31 H 1.08993 * 109.47229 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47246 * 239.99938 * 2 1 3 33 33 H 1.09004 * 109.46706 * 120.00332 * 2 1 3 34 34 H 1.07992 * 125.50413 * 0.02562 * 4 3 2 35 35 H 1.09004 * 110.36598 * 322.93107 * 10 9 7 36 36 H 1.08998 * 110.36681 * 85.25742 * 10 9 7 37 37 H 1.08997 * 111.00399 * 81.06738 * 11 10 9 38 38 H 1.09000 * 111.00470 * 204.91823 * 11 10 9 39 39 H 1.00894 * 110.99963 * 31.04080 * 14 12 11 40 40 H 1.08993 * 109.47153 * 299.99548 * 15 14 12 41 41 H 1.08998 * 109.47372 * 60.00288 * 15 14 12 42 42 H 0.97006 * 119.99478 * 359.97438 * 18 16 15 43 43 H 0.97001 * 120.00578 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.88297 * 298.38617 * 27 9 7 45 45 H 1.08992 * 109.88329 * 59.55509 * 27 9 7 46 46 H 1.08005 * 126.56582 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2850 2.1365 1.0972 5 7 2.7004 3.3092 0.7138 6 6 2.7145 3.3478 -0.6432 7 6 3.1205 4.4921 -1.4776 8 8 3.0885 4.4022 -2.6901 9 7 3.5275 5.6384 -0.8973 10 6 3.6149 5.8830 0.5538 11 6 3.5120 7.4214 0.7036 12 6 4.3054 7.9089 -0.5373 13 1 5.3761 7.9137 -0.3330 14 7 3.8489 9.2411 -0.9557 15 6 4.9050 9.9540 -1.6867 16 6 4.4008 11.3129 -2.0993 17 8 3.2728 11.6541 -1.8121 18 7 5.2032 12.1491 -2.7873 19 6 4.7447 13.3856 -3.1621 20 1 3.7406 13.6897 -2.9057 21 6 5.5721 14.2478 -3.8709 22 7 6.7940 13.8780 -4.1825 23 14 4.9472 15.9323 -4.3823 24 1 4.5711 16.7086 -3.1736 25 1 6.0145 16.6527 -5.1218 26 1 3.7587 15.7742 -5.2587 27 6 3.9636 6.8500 -1.6068 28 6 2.2793 2.1357 -1.0933 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.1715 1.8158 2.1222 35 1 2.7887 5.3953 1.0712 36 1 4.5694 5.5271 0.9416 37 1 2.4737 7.7498 0.6573 38 1 3.9854 7.7566 1.6265 39 1 3.5305 9.7793 -0.1640 40 1 5.7774 10.0696 -1.0436 41 1 5.1807 9.3844 -2.5742 42 1 6.1054 11.8763 -3.0165 43 1 7.3716 14.4798 -4.6776 44 1 4.8454 6.6300 -2.2086 45 1 3.1591 7.2161 -2.2444 46 1 2.1677 1.8346 -2.1245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480120916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:40 Heat of formation + Delta-G solvation = -22.157976 kcal Electronic energy + Delta-G solvation = -27728.145852 eV Core-core repulsion = 23653.024027 eV Total energy + Delta-G solvation = -4075.121825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.16586 -40.87870 -40.10020 -38.67937 -36.23021 -35.93400 -35.47274 -33.27001 -31.93926 -31.26049 -30.69730 -29.57430 -27.95838 -26.12015 -24.92493 -24.35815 -23.08542 -21.90532 -21.50749 -21.08975 -20.36625 -19.89033 -18.54498 -17.95589 -17.45218 -17.37855 -16.74190 -16.69175 -16.29612 -16.16580 -15.90156 -15.42925 -15.22723 -15.16581 -14.91389 -14.70743 -14.62829 -14.47118 -13.97679 -13.81758 -13.57481 -13.49466 -13.37034 -13.10428 -12.96192 -12.82717 -12.56963 -12.42236 -12.22622 -12.18921 -12.11102 -11.80062 -11.49879 -11.35123 -10.92468 -10.72225 -10.34782 -10.01372 -9.86178 -9.47882 -9.40275 -8.45882 -5.94971 0.54422 1.40396 1.42071 1.46405 1.53264 1.66754 2.05364 2.06403 2.30092 2.49676 2.91562 3.21244 3.30274 3.43822 3.63796 3.69905 3.81172 3.91169 4.11326 4.13752 4.17982 4.28787 4.35879 4.40303 4.43331 4.44582 4.51983 4.60123 4.70083 4.73790 4.85430 4.87634 4.96311 4.97553 5.10936 5.19067 5.24758 5.31848 5.41191 5.51044 5.89070 6.09334 6.15741 6.38157 6.50518 6.60409 6.79089 7.12730 7.15767 7.56311 8.11596 8.71235 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034646 B = 0.001707 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.978449 B =16394.801374 C =16631.014785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 N -0.449 5.449 4 C 0.198 3.802 5 N -0.488 5.488 6 C -0.093 4.093 7 C 0.603 3.397 8 O -0.593 6.593 9 N -0.606 5.606 10 C 0.116 3.884 11 C -0.129 4.129 12 C 0.082 3.918 13 H 0.083 0.917 14 N -0.674 5.674 15 C 0.065 3.935 16 C 0.438 3.562 17 O -0.623 6.623 18 N -0.572 5.572 19 C -0.337 4.337 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.274 1.274 27 C 0.115 3.885 28 C 0.041 3.959 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.252 0.748 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.355 0.645 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 -32.540 15.300 36.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.026 4.026 3 N -0.129 5.129 4 C -0.086 4.086 5 N -0.207 5.207 6 C -0.220 4.220 7 C 0.394 3.606 8 O -0.474 6.474 9 N -0.338 5.338 10 C -0.006 4.006 11 C -0.167 4.167 12 C -0.028 4.028 13 H 0.101 0.899 14 N -0.308 5.308 15 C -0.068 4.068 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.818 3.182 24 H -0.195 1.195 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.009 4.009 28 C -0.101 4.101 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.268 0.732 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.176 0.824 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.591 -32.019 14.683 35.836 hybrid contribution 0.581 0.611 -0.775 1.145 sum -6.010 -31.408 13.908 34.872 Atomic orbital electron populations 1.22172 0.93636 1.04402 1.02466 1.22338 0.95862 0.77156 1.07254 1.45797 1.47249 1.14235 1.05649 1.26053 1.00985 0.86399 0.95196 1.70586 1.19800 1.20964 1.09365 1.20211 1.15062 0.95374 0.91392 1.17105 0.76304 0.81295 0.85923 1.90760 1.57946 1.83441 1.15272 1.48276 1.63916 1.12037 1.09534 1.22522 1.03935 0.94953 0.79171 1.23057 1.01382 0.94597 0.97672 1.22526 0.99094 0.87480 0.93732 0.89885 1.59880 1.36759 1.03333 1.30789 1.21611 0.93612 0.91320 1.00234 1.20842 0.86153 0.87829 0.82643 1.90489 1.21502 1.78267 1.60693 1.41922 1.15235 1.14444 1.49361 1.19652 1.00149 0.92454 1.34356 0.90290 1.26050 0.95336 1.03394 0.96456 1.69669 1.07544 1.38966 1.39883 0.84974 0.77845 0.76943 0.78469 1.19508 1.19421 1.19931 1.21945 0.99240 0.84280 0.95443 1.22678 1.01662 0.91311 0.94441 0.91888 0.93506 0.88335 0.87583 0.85315 0.73196 0.87868 0.90333 0.90635 0.86862 0.82428 0.90629 0.88486 0.76958 0.91286 0.92051 0.92961 0.79058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.29 10.24 71.98 0.74 0.45 16 2 C 0.09 0.09 6.84 86.38 0.59 0.68 16 3 N -0.45 -4.40 2.73 -528.38 -1.44 -5.83 16 4 C 0.20 2.13 12.55 180.10 2.26 4.39 16 5 N -0.49 -9.53 8.38 -188.81 -1.58 -11.11 16 6 C -0.09 -2.26 6.80 40.50 0.28 -1.99 16 7 C 0.60 19.19 7.84 86.63 0.68 19.87 16 8 O -0.59 -22.92 17.21 -4.11 -0.07 -22.99 16 9 N -0.61 -17.46 3.33 -815.75 -2.71 -20.17 16 10 C 0.12 2.49 6.13 86.86 0.53 3.03 16 11 C -0.13 -2.63 6.47 31.99 0.21 -2.42 16 12 C 0.08 2.08 3.27 46.11 0.15 2.23 16 13 H 0.08 1.81 7.83 -2.39 -0.02 1.79 16 14 N -0.67 -22.08 5.95 -489.43 -2.91 -24.99 16 15 C 0.06 2.29 6.03 85.56 0.52 2.81 16 16 C 0.44 21.47 7.82 87.66 0.69 22.16 16 17 O -0.62 -35.47 15.78 -3.06 -0.05 -35.52 16 18 N -0.57 -30.21 5.29 -306.99 -1.62 -31.83 16 19 C -0.34 -19.60 9.68 84.04 0.81 -18.79 16 20 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 21 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 22 N -0.92 -50.62 13.05 21.66 0.28 -50.33 16 23 Si 0.99 43.86 29.55 68.60 2.03 45.89 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 C 0.11 3.49 6.63 86.73 0.58 4.07 16 28 C 0.04 0.72 11.26 83.72 0.94 1.66 16 29 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.13 -0.57 8.14 -2.39 -0.02 -0.59 16 34 H 0.25 0.23 8.06 -2.91 -0.02 0.20 16 35 H 0.10 2.22 6.14 -2.38 -0.01 2.21 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.35 11.64 8.13 -89.70 -0.73 10.91 16 40 H 0.08 2.26 8.08 -2.39 -0.02 2.24 16 41 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 42 H 0.40 19.86 7.90 -92.70 -0.73 19.13 16 43 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 44 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.05 1.91 8.03 -2.39 -0.02 1.90 16 46 H 0.19 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -83.37 388.76 0.91 -82.46 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: -0.44 Total: 36.51 kcal Atomic # 6 Polarization: 28.50 SS G_CDS: 9.43 Total: 37.94 kcal Atomic # 7 Polarization: -134.29 SS G_CDS: -9.99 Total: -144.27 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -0.12 Total: -58.52 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -83.37 0.91 -82.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480120916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.302 kcal (2) G-P(sol) polarization free energy of solvation -83.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds