Wall clock time and date at job start Tue Mar 31 2020 18:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47028 * 2 1 4 4 C 1.53002 * 109.46859 * 240.00368 * 2 1 3 5 5 N 1.46502 * 109.46741 * 185.00316 * 4 2 1 6 6 C 1.34770 * 119.99743 * 180.02562 * 5 4 2 7 7 O 1.21574 * 120.00605 * 359.97438 * 6 5 4 8 8 C 1.47717 * 119.99985 * 179.97438 * 6 5 4 9 9 C 1.41497 * 126.51788 * 179.97438 * 8 6 5 10 10 C 1.35366 * 105.50361 * 179.97438 * 9 8 6 11 11 C 1.50701 * 126.38749 * 179.97438 * 10 9 8 12 12 C 1.53001 * 117.51956 * 146.28094 * 11 10 9 13 13 C 1.52999 * 60.00190 * 107.47765 * 12 11 10 14 14 N 1.35037 * 107.22596 * 0.22393 * 10 9 8 15 15 H 0.97000 * 124.88206 * 179.76901 * 14 10 9 16 16 N 1.28468 * 110.23149 * 359.61289 * 14 10 9 17 17 N 1.46902 * 109.46962 * 120.00224 * 2 1 3 18 18 C 1.46895 * 111.00062 * 275.00117 * 17 2 1 19 19 C 1.50695 * 109.47134 * 180.02562 * 18 17 2 20 20 O 1.21297 * 120.00079 * 0.02562 * 19 18 17 21 21 N 1.34783 * 120.00055 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99980 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99864 * 0.02562 * 22 21 19 24 24 C 1.38947 * 119.99963 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00025 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99867 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47391 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47214 * 120.00482 * 26 24 22 29 29 H 1.48508 * 109.47396 * 240.00198 * 26 24 22 30 30 H 1.09003 * 109.47314 * 59.99760 * 1 2 3 31 31 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47284 * 299.99732 * 1 2 3 33 33 H 1.08997 * 109.47428 * 65.00257 * 4 2 1 34 34 H 1.08995 * 109.47020 * 304.99908 * 4 2 1 35 35 H 0.97004 * 119.99972 * 359.97438 * 5 4 2 36 36 H 1.07997 * 127.24986 * 359.97438 * 9 8 6 37 37 H 1.09002 * 115.55088 * 0.57703 * 11 10 9 38 38 H 1.09001 * 117.49733 * 214.97195 * 12 11 10 39 39 H 1.08995 * 117.49577 * 359.97438 * 12 11 10 40 40 H 1.09004 * 117.50150 * 252.51496 * 13 12 11 41 41 H 1.09004 * 117.51638 * 107.47550 * 13 12 11 42 42 H 1.00904 * 110.99817 * 38.95497 * 17 2 1 43 43 H 1.09004 * 109.47309 * 300.00228 * 18 17 2 44 44 H 1.09000 * 109.47509 * 59.99893 * 18 17 2 45 45 H 0.96993 * 119.99899 * 0.02562 * 21 19 18 46 46 H 0.97001 * 120.00046 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4282 -2.1912 7 8 3.5685 -1.8842 -3.1423 8 6 5.6452 -1.5338 -2.1323 9 6 6.4857 -2.1338 -3.0996 10 6 7.7446 -1.9932 -2.6222 11 6 9.0109 -2.4697 -3.2861 12 6 10.2713 -1.6240 -3.0935 13 6 10.1376 -2.9711 -2.3805 14 7 7.6537 -1.3513 -1.4377 15 1 8.4075 -1.1211 -0.8722 16 7 6.4257 -1.0864 -1.1690 17 7 2.0197 -0.6926 1.1994 18 6 2.0824 0.2224 2.3469 19 6 2.5884 -0.5217 3.5557 20 8 2.8696 -1.6985 3.4696 21 7 2.7295 0.1206 4.7322 22 6 3.1904 -0.5563 5.8317 23 1 3.4407 -1.6041 5.7551 24 6 3.3363 0.1060 7.0445 25 7 3.0321 1.3810 7.1376 26 14 3.9635 -0.8165 8.5428 27 1 4.2319 -2.2305 8.1771 28 1 5.2176 -0.1837 9.0246 29 1 2.9402 -0.7685 9.6179 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.7517 -0.1582 -2.1370 34 1 1.6053 -1.7197 -1.2953 35 1 3.9824 -0.4622 -0.4319 36 1 6.1860 -2.6049 -4.0240 37 1 8.8796 -2.9657 -4.2478 38 1 10.9693 -1.5637 -3.9286 39 1 10.1848 -0.7226 -2.4870 40 1 9.9631 -2.9560 -1.3046 41 1 10.7473 -3.7973 -2.7464 42 1 1.4495 -1.4980 1.4100 43 1 2.7588 1.0461 2.1183 44 1 1.0871 0.6162 2.5526 45 1 2.5050 1.0617 4.8009 46 1 3.1344 1.8434 7.9842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480539388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:34 Heat of formation + Delta-G solvation = 23.118479 kcal Electronic energy + Delta-G solvation = -27787.694126 eV Core-core repulsion = 23714.535635 eV Total energy + Delta-G solvation = -4073.158490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.87693 -39.37407 -38.37324 -37.58834 -36.83897 -34.10527 -33.69456 -32.01526 -31.29638 -30.92355 -30.40282 -26.72278 -26.23771 -24.17743 -23.88471 -22.99463 -22.91409 -21.27402 -20.94959 -19.69550 -19.26985 -17.96789 -17.91005 -16.92291 -16.37094 -16.02041 -15.86908 -15.69247 -15.34850 -14.97466 -14.60012 -14.44835 -14.28004 -13.96610 -13.82567 -13.62147 -13.24356 -13.03760 -12.64374 -12.47752 -12.45798 -12.16604 -12.12685 -11.68681 -11.56713 -11.51156 -11.39004 -11.12533 -11.06977 -10.95672 -10.85680 -10.35221 -10.23026 -10.07788 -9.53240 -9.52421 -8.98882 -8.86451 -8.48140 -8.08033 -7.96240 -6.42461 -3.83032 1.50028 1.85399 2.63326 3.15354 3.25917 3.27387 3.33371 3.41323 3.52380 3.90726 4.00135 4.07837 4.25877 4.30361 4.38788 4.43179 4.68228 4.82455 4.97930 5.09668 5.14732 5.17399 5.22922 5.28809 5.33239 5.44042 5.48231 5.52982 5.53729 5.66545 5.72819 5.74214 5.79089 5.92144 6.02941 6.07673 6.21962 6.27032 6.56204 6.77360 7.17733 7.54826 7.56847 7.63132 7.85586 8.06138 8.34031 8.60950 9.17719 9.54129 10.05716 10.75409 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008945 B = 0.002594 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.508610 B =10790.506990 C =13468.764480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.134 3.866 5 N -0.697 5.697 6 C 0.602 3.398 7 O -0.545 6.545 8 C -0.008 4.008 9 C -0.171 4.171 10 C 0.042 3.958 11 C -0.086 4.086 12 C -0.174 4.174 13 C -0.174 4.174 14 N -0.379 5.379 15 H 0.443 0.557 16 N -0.245 5.245 17 N -0.663 5.663 18 C 0.050 3.950 19 C 0.441 3.559 20 O -0.581 6.581 21 N -0.565 5.565 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.416 0.584 36 H 0.162 0.838 37 H 0.133 0.867 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.353 0.647 43 H 0.086 0.914 44 H 0.045 0.955 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.286 -0.797 -20.551 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.103 0.897 4 C 0.009 3.991 5 N -0.348 5.348 6 C 0.386 3.614 7 O -0.421 6.421 8 C -0.169 4.169 9 C -0.199 4.199 10 C -0.083 4.083 11 C -0.106 4.106 12 C -0.212 4.212 13 C -0.211 4.211 14 N -0.094 5.094 15 H 0.287 0.713 16 N -0.081 5.081 17 N -0.296 5.296 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.465 6.465 21 N -0.202 5.202 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.253 0.747 36 H 0.180 0.820 37 H 0.151 0.849 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.173 0.827 43 H 0.104 0.896 44 H 0.063 0.937 45 H 0.225 0.775 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.596 -1.163 -20.253 22.033 hybrid contribution -0.111 0.251 1.129 1.162 sum 8.485 -0.912 -19.124 20.942 Atomic orbital electron populations 1.22435 0.96199 1.02746 1.02604 1.21857 0.93355 0.98363 0.90738 0.89744 1.21376 0.79835 1.01095 0.96776 1.45663 1.07716 1.58244 1.23188 1.16849 0.83964 0.78053 0.82566 1.90768 1.68448 1.48995 1.33925 1.21939 0.94658 1.05749 0.94574 1.21402 0.89793 1.06430 1.02249 1.20445 0.96051 1.02519 0.89322 1.20516 0.84897 1.04479 1.00672 1.23098 0.99273 0.94978 1.03836 1.23115 1.01054 0.98231 0.98743 1.43245 1.06830 1.42620 1.16672 0.71278 1.73686 0.89957 1.20248 1.24170 1.60160 1.57729 1.09164 1.02525 1.21712 0.99996 0.95656 0.90884 1.19821 0.85118 0.88246 0.84180 1.90539 1.55137 1.16268 1.84580 1.41870 1.57856 1.12457 1.07982 1.19743 1.39725 0.96444 0.86769 0.87919 1.25255 0.97734 0.95778 0.99241 1.69620 1.48831 1.08856 1.27078 0.85814 0.78243 0.79646 0.80725 1.19228 1.20768 1.20771 0.91819 0.91940 0.91939 0.91163 0.91310 0.74671 0.82008 0.84925 0.87574 0.88744 0.88623 0.87526 0.82667 0.89628 0.93718 0.77499 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 9.16 37.16 0.34 -1.45 16 2 C 0.07 0.79 2.75 -67.71 -0.19 0.60 16 3 H 0.08 0.93 7.80 -51.93 -0.41 0.52 16 4 C 0.13 1.65 5.37 -4.04 -0.02 1.63 16 5 N -0.70 -9.83 5.39 -61.29 -0.33 -10.16 16 6 C 0.60 9.32 7.82 -12.39 -0.10 9.23 16 7 O -0.55 -9.58 16.93 5.30 0.09 -9.49 16 8 C -0.01 -0.12 7.13 -82.76 -0.59 -0.71 16 9 C -0.17 -2.04 10.73 -39.37 -0.42 -2.47 16 10 C 0.04 0.40 6.64 -82.21 -0.55 -0.14 16 11 C -0.09 -0.55 6.26 -91.77 -0.57 -1.12 16 12 C -0.17 -0.85 10.22 -26.73 -0.27 -1.12 16 13 C -0.17 -0.91 10.22 -26.73 -0.27 -1.18 16 14 N -0.38 -3.86 6.80 33.50 0.23 -3.63 16 15 H 0.44 3.18 8.96 -190.44 -1.71 1.47 16 16 N -0.24 -3.31 11.92 33.42 0.40 -2.91 16 17 N -0.66 -10.14 5.31 -107.99 -0.57 -10.72 16 18 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 19 C 0.44 10.24 7.82 -10.98 -0.09 10.15 16 20 O -0.58 -15.68 15.78 5.54 0.09 -15.60 16 21 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 22 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 23 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 26 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.42 6.08 7.86 -40.82 -0.32 5.76 16 36 H 0.16 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.35 5.77 8.17 -39.29 -0.32 5.45 16 43 H 0.09 1.32 8.06 -51.93 -0.42 0.91 16 44 H 0.04 0.68 7.44 -51.93 -0.39 0.29 16 45 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 397.05 15.07 5.98 5.98 Total: -1.00 -34.37 397.05 -9.48 -43.85 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -8.01 Total: 18.35 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -3.00 Total: 6.29 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: 0.39 Total: -65.41 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: 0.18 Total: -25.08 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.37 -9.48 -43.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480539388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.970 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds