Wall clock time and date at job start Tue Mar 31 2020 18:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47028 * 2 1 4 4 C 1.53002 * 109.46859 * 240.00368 * 2 1 3 5 5 N 1.46502 * 109.46741 * 185.00316 * 4 2 1 6 6 C 1.34770 * 119.99743 * 180.02562 * 5 4 2 7 7 O 1.21574 * 120.00605 * 359.97438 * 6 5 4 8 8 C 1.47717 * 119.99985 * 179.97438 * 6 5 4 9 9 C 1.41497 * 126.51788 * 179.97438 * 8 6 5 10 10 C 1.35366 * 105.50361 * 179.97438 * 9 8 6 11 11 C 1.50701 * 126.38749 * 179.97438 * 10 9 8 12 12 C 1.53001 * 117.51956 * 146.28094 * 11 10 9 13 13 C 1.52999 * 60.00190 * 107.47765 * 12 11 10 14 14 N 1.35037 * 107.22596 * 0.22393 * 10 9 8 15 15 H 0.97000 * 124.88206 * 179.76901 * 14 10 9 16 16 N 1.28468 * 110.23149 * 359.61289 * 14 10 9 17 17 N 1.46902 * 109.46962 * 120.00224 * 2 1 3 18 18 C 1.46895 * 111.00062 * 275.00117 * 17 2 1 19 19 C 1.50695 * 109.47134 * 180.02562 * 18 17 2 20 20 O 1.21297 * 120.00079 * 0.02562 * 19 18 17 21 21 N 1.34783 * 120.00055 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99980 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99864 * 0.02562 * 22 21 19 24 24 C 1.38947 * 119.99963 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00025 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99867 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47391 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47214 * 120.00482 * 26 24 22 29 29 H 1.48508 * 109.47396 * 240.00198 * 26 24 22 30 30 H 1.09003 * 109.47314 * 59.99760 * 1 2 3 31 31 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47284 * 299.99732 * 1 2 3 33 33 H 1.08997 * 109.47428 * 65.00257 * 4 2 1 34 34 H 1.08995 * 109.47020 * 304.99908 * 4 2 1 35 35 H 0.97004 * 119.99972 * 359.97438 * 5 4 2 36 36 H 1.07997 * 127.24986 * 359.97438 * 9 8 6 37 37 H 1.09002 * 115.55088 * 0.57703 * 11 10 9 38 38 H 1.09001 * 117.49733 * 214.97195 * 12 11 10 39 39 H 1.08995 * 117.49577 * 359.97438 * 12 11 10 40 40 H 1.09004 * 117.50150 * 252.51496 * 13 12 11 41 41 H 1.09004 * 117.51638 * 107.47550 * 13 12 11 42 42 H 1.00904 * 110.99817 * 38.95497 * 17 2 1 43 43 H 1.09004 * 109.47309 * 300.00228 * 18 17 2 44 44 H 1.09000 * 109.47509 * 59.99893 * 18 17 2 45 45 H 0.96993 * 119.99899 * 0.02562 * 21 19 18 46 46 H 0.97001 * 120.00046 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4282 -2.1912 7 8 3.5685 -1.8842 -3.1423 8 6 5.6452 -1.5338 -2.1323 9 6 6.4857 -2.1338 -3.0996 10 6 7.7446 -1.9932 -2.6222 11 6 9.0109 -2.4697 -3.2861 12 6 10.2713 -1.6240 -3.0935 13 6 10.1376 -2.9711 -2.3805 14 7 7.6537 -1.3513 -1.4377 15 1 8.4075 -1.1211 -0.8722 16 7 6.4257 -1.0864 -1.1690 17 7 2.0197 -0.6926 1.1994 18 6 2.0824 0.2224 2.3469 19 6 2.5884 -0.5217 3.5557 20 8 2.8696 -1.6985 3.4696 21 7 2.7295 0.1206 4.7322 22 6 3.1904 -0.5563 5.8317 23 1 3.4407 -1.6041 5.7551 24 6 3.3363 0.1060 7.0445 25 7 3.0321 1.3810 7.1376 26 14 3.9635 -0.8165 8.5428 27 1 4.2319 -2.2305 8.1771 28 1 5.2176 -0.1837 9.0246 29 1 2.9402 -0.7685 9.6179 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.7517 -0.1582 -2.1370 34 1 1.6053 -1.7197 -1.2953 35 1 3.9824 -0.4622 -0.4319 36 1 6.1860 -2.6049 -4.0240 37 1 8.8796 -2.9657 -4.2478 38 1 10.9693 -1.5637 -3.9286 39 1 10.1848 -0.7226 -2.4870 40 1 9.9631 -2.9560 -1.3046 41 1 10.7473 -3.7973 -2.7464 42 1 1.4495 -1.4980 1.4100 43 1 2.7588 1.0461 2.1183 44 1 1.0871 0.6162 2.5526 45 1 2.5050 1.0617 4.8009 46 1 3.1344 1.8434 7.9842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480539388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:34 Heat of formation + Delta-G solvation = -3.922248 kcal Electronic energy + Delta-G solvation = -27788.866700 eV Core-core repulsion = 23714.535635 eV Total energy + Delta-G solvation = -4074.331064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.77241 -40.56507 -40.10085 -38.16190 -38.03592 -35.97394 -35.04311 -33.28538 -32.96182 -31.99162 -31.39413 -27.96422 -27.62502 -25.72921 -24.87840 -23.85390 -23.28745 -22.11302 -21.98314 -21.11681 -20.72132 -19.91546 -18.72362 -18.08717 -17.61404 -17.20842 -16.93588 -16.65310 -16.46045 -16.38420 -16.24023 -15.78417 -15.36160 -15.26287 -15.06738 -14.74911 -14.38422 -14.33457 -13.73373 -13.66329 -13.44029 -13.35882 -13.16004 -13.06601 -12.78458 -12.52911 -12.47951 -12.39590 -12.12478 -12.06048 -11.96752 -11.87941 -11.51110 -11.44513 -11.23633 -10.51537 -10.33855 -10.00641 -9.98122 -9.77953 -9.32569 -8.46819 -5.95015 0.49220 0.99382 1.35734 1.41017 1.54996 1.81828 2.06884 2.24815 2.29202 2.37516 2.90733 2.99280 3.20844 3.37288 3.44470 3.54563 3.77222 3.85435 4.02349 4.08524 4.12311 4.27009 4.32687 4.36178 4.49107 4.57674 4.61693 4.67344 4.74347 4.75280 4.81574 4.90752 4.99344 5.00963 5.13586 5.17985 5.27084 5.29205 5.41181 5.46443 5.89651 6.01264 6.10847 6.38207 6.49123 6.61000 6.84616 7.13575 7.18219 7.57631 8.13468 8.70820 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008945 B = 0.002594 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.508610 B =10790.506990 C =13468.764480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.076 3.924 3 H 0.099 0.901 4 C 0.133 3.867 5 N -0.694 5.694 6 C 0.597 3.403 7 O -0.574 6.574 8 C -0.033 4.033 9 C -0.194 4.194 10 C 0.062 3.938 11 C -0.102 4.102 12 C -0.163 4.163 13 C -0.170 4.170 14 N -0.369 5.369 15 H 0.455 0.545 16 N -0.270 5.270 17 N -0.677 5.677 18 C 0.067 3.933 19 C 0.438 3.562 20 O -0.623 6.623 21 N -0.574 5.574 22 C -0.331 4.331 23 H 0.076 0.924 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.991 3.009 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.414 0.586 36 H 0.168 0.832 37 H 0.147 0.853 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.345 0.655 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.270 0.002 -20.975 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.034 4.034 3 H 0.117 0.883 4 C 0.009 3.991 5 N -0.344 5.344 6 C 0.382 3.618 7 O -0.453 6.453 8 C -0.193 4.193 9 C -0.222 4.222 10 C -0.064 4.064 11 C -0.122 4.122 12 C -0.200 4.200 13 C -0.207 4.207 14 N -0.085 5.085 15 H 0.302 0.698 16 N -0.106 5.106 17 N -0.309 5.309 18 C -0.065 4.065 19 C 0.226 3.774 20 O -0.510 6.510 21 N -0.212 5.212 22 C -0.460 4.460 23 H 0.094 0.906 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.815 3.185 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.250 0.750 36 H 0.186 0.814 37 H 0.165 0.835 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.139 0.861 42 H 0.165 0.835 43 H 0.124 0.876 44 H 0.088 0.912 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.571 -0.315 -20.669 22.780 hybrid contribution -0.354 -0.011 1.210 1.261 sum 9.217 -0.326 -19.459 21.534 Atomic orbital electron populations 1.22374 0.94423 1.02960 1.03637 1.21876 0.94650 0.98355 0.88504 0.88316 1.21494 0.78857 1.00946 0.97805 1.45726 1.08421 1.57592 1.22620 1.17105 0.84677 0.77700 0.82363 1.90732 1.69203 1.50389 1.34961 1.21939 0.94344 1.07240 0.95783 1.21609 0.90476 1.07442 1.02637 1.20855 0.96720 1.00390 0.88398 1.20679 0.83935 1.06121 1.01422 1.23206 0.97904 0.94777 1.04126 1.23209 1.00025 0.99083 0.98404 1.43305 1.06356 1.41852 1.16998 0.69792 1.73604 0.91126 1.21326 1.24583 1.60123 1.58624 1.09164 1.02997 1.21559 1.01305 0.95220 0.88448 1.20939 0.83298 0.87991 0.85192 1.90509 1.56543 1.18461 1.85455 1.41932 1.58401 1.12612 1.08211 1.19661 1.41928 0.95850 0.88599 0.90566 1.26004 0.97338 0.96616 1.01314 1.69674 1.48772 1.09631 1.28067 0.84905 0.78219 0.78015 0.77403 1.19946 1.19577 1.19587 0.89727 0.92213 0.91885 0.89656 0.92340 0.74952 0.81412 0.83533 0.85885 0.88641 0.88999 0.86069 0.83533 0.87621 0.91232 0.76960 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.16 71.98 0.66 -2.43 16 2 C 0.08 1.65 2.75 44.92 0.12 1.77 16 3 H 0.10 1.91 7.80 -2.39 -0.02 1.89 16 4 C 0.13 3.20 5.37 86.38 0.46 3.66 16 5 N -0.69 -19.74 5.39 -466.10 -2.51 -22.25 16 6 C 0.60 19.02 7.82 86.75 0.68 19.70 16 7 O -0.57 -20.75 16.93 -3.95 -0.07 -20.82 16 8 C -0.03 -0.97 7.13 42.46 0.30 -0.67 16 9 C -0.19 -4.69 10.73 22.41 0.24 -4.45 16 10 C 0.06 1.16 6.64 41.40 0.28 1.44 16 11 C -0.10 -1.12 6.26 -11.54 -0.07 -1.19 16 12 C -0.16 -1.18 10.22 30.59 0.31 -0.87 16 13 C -0.17 -1.39 10.22 30.60 0.31 -1.08 16 14 N -0.37 -7.35 6.80 -47.93 -0.33 -7.67 16 15 H 0.46 6.16 8.96 -219.99 -1.97 4.19 16 16 N -0.27 -7.40 11.92 -48.17 -0.57 -7.97 16 17 N -0.68 -20.23 5.31 -495.58 -2.63 -22.86 16 18 C 0.07 2.17 5.96 85.56 0.51 2.68 16 19 C 0.44 20.54 7.82 87.65 0.69 21.22 16 20 O -0.62 -34.54 15.78 -3.08 -0.05 -34.59 16 21 N -0.57 -29.18 5.29 -306.97 -1.62 -30.80 16 22 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 23 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 24 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 25 N -0.92 -49.43 13.05 21.66 0.28 -49.15 16 26 Si 0.99 42.98 29.55 68.60 2.03 45.00 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 29 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 32 H 0.06 1.13 7.45 -2.39 -0.02 1.11 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.41 12.19 7.86 -92.71 -0.73 11.46 16 36 H 0.17 3.67 8.06 -2.91 -0.02 3.65 16 37 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.35 11.27 8.17 -89.69 -0.73 10.54 16 43 H 0.11 3.05 8.06 -2.39 -0.02 3.03 16 44 H 0.07 1.95 7.44 -2.39 -0.02 1.93 16 45 H 0.40 19.06 7.90 -92.71 -0.73 18.32 16 46 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -75.87 397.05 -2.81 -78.68 By element: Atomic # 1 Polarization: 53.97 SS G_CDS: -3.11 Total: 50.86 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 5.77 Total: 21.59 kcal Atomic # 7 Polarization: -133.33 SS G_CDS: -7.38 Total: -140.72 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: -0.12 Total: -55.41 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -75.87 -2.81 -78.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480539388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.756 kcal (2) G-P(sol) polarization free energy of solvation -75.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds