Wall clock time and date at job start Tue Mar 31 2020 18:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08995 * 109.47190 * 2 1 4 4 C 1.52993 * 109.47600 * 239.99288 * 2 1 3 5 5 N 1.46494 * 109.47244 * 65.00424 * 4 2 1 6 6 C 1.36938 * 120.00686 * 180.02562 * 5 4 2 7 7 H 1.08006 * 119.99468 * 359.97438 * 6 5 4 8 8 C 1.38806 * 120.00544 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99963 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00139 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46996 * 89.99950 * 10 8 6 12 12 H 1.48499 * 109.47124 * 210.00166 * 10 8 6 13 13 H 1.48501 * 109.46880 * 330.00006 * 10 8 6 14 14 C 1.53009 * 109.46978 * 119.99176 * 2 1 3 15 15 N 1.46500 * 109.47109 * 295.00745 * 14 2 1 16 16 C 1.34774 * 119.99709 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00106 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99884 * 179.97438 * 16 15 14 19 19 H 1.08994 * 109.50613 * 33.38162 * 18 16 15 20 20 C 1.53093 * 109.50574 * 273.29575 * 18 16 15 21 21 O 1.43025 * 109.25769 * 183.26225 * 20 18 16 22 22 C 1.43016 * 113.77416 * 58.59680 * 21 20 18 23 23 C 1.53100 * 109.26292 * 301.36290 * 22 21 20 24 24 N 1.47010 * 109.25916 * 56.84454 * 23 22 21 25 25 C 1.46904 * 111.00002 * 177.61255 * 24 23 22 26 26 C 1.52995 * 109.46848 * 286.99810 * 25 24 23 27 27 F 1.39896 * 109.47257 * 305.65403 * 26 25 24 28 28 F 1.39901 * 109.47078 * 65.65066 * 26 25 24 29 29 H 1.09006 * 109.47137 * 60.00642 * 1 2 3 30 30 H 1.08995 * 109.47190 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47933 * 300.00628 * 1 2 3 32 32 H 1.09002 * 109.47214 * 184.99914 * 4 2 1 33 33 H 1.08996 * 109.47178 * 305.00256 * 4 2 1 34 34 H 0.97001 * 120.00151 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99962 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46588 * 55.00306 * 14 2 1 37 37 H 1.08996 * 109.47386 * 174.99715 * 14 2 1 38 38 H 0.96998 * 119.99778 * 359.97438 * 15 14 2 39 39 H 1.09001 * 109.51155 * 303.14790 * 20 18 16 40 40 H 1.08997 * 109.51026 * 63.27942 * 20 18 16 41 41 H 1.08998 * 109.50863 * 181.42445 * 22 21 20 42 42 H 1.09003 * 109.50450 * 61.29505 * 22 21 20 43 43 H 1.09005 * 109.49876 * 296.91225 * 23 22 21 44 44 H 1.08990 * 109.54521 * 176.80656 * 23 22 21 45 45 H 1.09002 * 109.46865 * 46.99697 * 25 24 23 46 46 H 1.09000 * 109.47011 * 166.99648 * 25 24 23 47 47 H 1.08992 * 109.47113 * 185.65339 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6526 0.0351 -2.4423 6 6 2.0013 -0.4211 -3.6855 7 1 2.5623 -1.3385 -3.7862 8 6 1.6338 0.2954 -4.8161 9 7 0.9496 1.4131 -4.6933 10 14 2.1101 -0.3266 -6.5119 11 1 1.0403 -1.2158 -7.0314 12 1 2.2851 0.8265 -7.4310 13 1 3.3836 -1.0851 -6.4212 14 6 2.0399 -0.7211 1.2494 15 7 1.6522 0.0356 2.4424 16 6 1.9952 -0.4133 3.6661 17 8 2.6253 -1.4433 3.7795 18 6 1.5969 0.3654 4.8933 19 1 0.6344 0.8473 4.7221 20 6 2.6563 1.4302 5.1893 21 8 2.3123 2.1150 6.3969 22 6 2.2018 1.2563 7.5352 23 6 1.1374 0.1903 7.2624 24 7 1.4917 -0.5473 6.0411 25 6 0.5235 -1.6194 5.7740 26 6 0.7331 -2.7568 6.7756 27 9 2.0683 -3.1725 6.7366 28 9 0.4222 -2.3072 8.0635 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 3.1263 -0.7995 -1.2053 33 1 1.6054 -1.7199 -1.2949 34 1 1.1490 0.8592 -2.3518 35 1 0.6931 1.9140 -5.4834 36 1 1.6053 -1.7197 1.2954 37 1 3.1262 -0.7994 1.2058 38 1 1.1485 0.8596 2.3516 39 1 3.6292 0.9531 5.3068 40 1 2.6968 2.1424 4.3651 41 1 1.9140 1.8433 8.4074 42 1 3.1612 0.7734 7.7212 43 1 0.1677 0.6701 7.1294 44 1 1.0892 -0.5007 8.1039 45 1 -0.4888 -1.2282 5.8750 46 1 0.6683 -1.9957 4.7613 47 1 0.0843 -3.5934 6.5163 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482126765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:10 Heat of formation + Delta-G solvation = -188.772487 kcal Electronic energy + Delta-G solvation = -29928.099938 eV Core-core repulsion = 25395.063979 eV Total energy + Delta-G solvation = -4533.035959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.87181 -47.85964 -41.62739 -39.84500 -38.23306 -36.87592 -35.93661 -34.20134 -32.71517 -31.72706 -31.36855 -27.96932 -27.46655 -26.98733 -25.65866 -24.23979 -23.39979 -22.23109 -21.56837 -20.92310 -19.30483 -18.77598 -18.40513 -18.00443 -17.80262 -17.41939 -17.23813 -16.82462 -16.47426 -16.31014 -15.94658 -15.78816 -15.53122 -15.28037 -15.26389 -14.98425 -14.82656 -14.70396 -14.22105 -14.17102 -13.86823 -13.71672 -13.56517 -13.35258 -13.26880 -12.96224 -12.79467 -12.78755 -12.51895 -12.20203 -12.16789 -12.14621 -11.97903 -11.70813 -11.65390 -11.52435 -11.01482 -10.94270 -10.63916 -10.12509 -9.56875 -8.99205 -7.95799 -5.23784 1.45891 1.47916 1.48907 1.57471 1.90203 2.44178 2.56434 2.84362 2.94319 3.34195 3.38154 3.52670 3.65431 3.70314 3.73424 3.86571 3.92010 3.97426 4.02909 4.08596 4.21271 4.22319 4.35469 4.41834 4.50153 4.55252 4.61255 4.64137 4.71472 4.78313 4.81561 4.89094 4.94564 5.04742 5.13696 5.31569 5.40171 5.48436 5.50348 5.54013 5.72449 5.99880 6.27283 6.49963 7.17169 7.34184 8.09663 8.33481 9.27645 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.022007 B = 0.002097 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.034416 B =13348.100905 C =14032.409145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.079 0.921 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.971 3.029 11 H -0.287 1.287 12 H -0.295 1.295 13 H -0.271 1.271 14 C 0.141 3.859 15 N -0.710 5.710 16 C 0.517 3.483 17 O -0.554 6.554 18 C 0.040 3.960 19 H 0.095 0.905 20 C 0.078 3.922 21 O -0.387 6.387 22 C 0.058 3.942 23 C 0.007 3.993 24 N -0.531 5.531 25 C -0.001 4.001 26 C 0.267 3.733 27 F -0.213 7.213 28 F -0.211 7.211 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.018 0.982 33 H 0.021 0.979 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.414 0.586 39 H 0.052 0.948 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.989 -2.010 28.962 29.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.097 0.903 4 C 0.029 3.971 5 N -0.385 5.385 6 C -0.378 4.378 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.619 5.619 10 Si 0.801 3.199 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.196 1.196 14 C 0.016 3.984 15 N -0.364 5.364 16 C 0.302 3.698 17 O -0.431 6.431 18 C -0.072 4.072 19 H 0.113 0.887 20 C 0.000 4.000 21 O -0.305 6.305 22 C -0.019 4.019 23 C -0.120 4.120 24 N -0.257 5.257 25 C -0.130 4.130 26 C 0.213 3.787 27 F -0.195 7.195 28 F -0.192 7.192 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.209 0.791 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.252 0.748 39 H 0.071 0.929 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.127 0.873 45 H 0.109 0.891 46 H 0.115 0.885 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.987 -2.889 29.041 29.337 hybrid contribution -0.690 0.376 -1.401 1.606 sum -3.677 -2.513 27.640 27.997 Atomic orbital electron populations 1.21720 0.93815 1.01938 1.01749 1.21333 0.97184 1.00106 0.92719 0.90253 1.20726 0.96493 0.94146 0.85703 1.42509 1.66831 1.27800 1.01335 1.19617 1.27799 1.05251 0.85088 0.90908 1.25526 1.01747 0.97903 1.01460 1.69797 1.45102 1.17850 1.29105 0.85169 0.78028 0.76823 0.79922 1.21383 1.22118 1.19643 1.21127 0.99576 0.95000 0.82682 1.45955 1.57376 1.28127 1.04927 1.20480 0.79312 0.85420 0.84583 1.90757 1.40025 1.25557 1.86783 1.22294 1.02029 0.93641 0.89215 0.88707 1.22571 0.95292 0.93496 0.88624 1.88018 1.90740 1.34477 1.17262 1.22882 0.98203 0.91776 0.88992 1.23273 0.98490 0.97205 0.93025 1.61862 1.49219 1.11746 1.02884 1.23363 0.96424 0.92627 1.00539 1.22285 0.80045 0.97290 0.79087 1.92987 1.38814 1.91325 1.96365 1.92863 1.92791 1.90627 1.42948 0.94049 0.92910 0.90455 0.96366 0.96094 0.79061 0.93957 0.91557 0.92156 0.74844 0.92947 0.85893 0.85703 0.92803 0.92335 0.87286 0.89098 0.88491 0.83402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.94 71.98 0.64 -2.84 16 2 C -0.09 -2.60 2.46 -10.80 -0.03 -2.63 16 3 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.16 5.94 5.65 86.38 0.49 6.43 16 5 N -0.74 -36.51 5.33 -343.48 -1.83 -38.34 16 6 C -0.25 -13.59 9.99 84.03 0.84 -12.75 16 7 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 8 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 9 N -0.97 -58.22 13.06 21.65 0.28 -57.93 16 10 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 14 C 0.14 3.34 5.06 86.38 0.44 3.78 16 15 N -0.71 -13.05 5.28 -463.05 -2.45 -15.49 16 16 C 0.52 10.95 5.78 87.66 0.51 11.46 16 17 O -0.55 -16.62 15.50 -3.03 -0.05 -16.67 16 18 C 0.04 0.65 2.38 44.18 0.11 0.76 16 19 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 20 C 0.08 1.29 6.28 72.01 0.45 1.74 16 21 O -0.39 -6.68 10.83 -148.98 -1.61 -8.29 16 22 C 0.06 0.81 7.01 72.02 0.50 1.31 16 23 C 0.01 0.10 5.33 86.32 0.46 0.56 16 24 N -0.53 -9.33 4.05 -874.40 -3.54 -12.87 16 25 C 0.00 -0.01 5.00 86.30 0.43 0.42 16 26 C 0.27 3.91 5.56 71.98 0.40 4.31 16 27 F -0.21 -5.01 17.16 44.97 0.77 -4.24 16 28 F -0.21 -3.26 14.51 44.97 0.65 -2.60 16 29 H 0.04 1.33 7.18 -2.38 -0.02 1.32 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.43 7.18 -2.39 -0.02 1.42 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.38 19.42 6.85 -92.71 -0.64 18.79 16 35 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.41 5.44 7.65 -92.71 -0.71 4.73 16 39 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 44 H 0.11 1.53 5.43 -2.39 -0.01 1.51 16 45 H 0.09 0.87 8.04 -2.39 -0.02 0.85 16 46 H 0.10 1.73 5.92 -2.39 -0.01 1.72 16 47 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -73.03 381.76 -0.39 -73.42 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.35 Total: 26.41 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.71 Total: 8.80 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -7.54 Total: -124.63 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -1.66 Total: -24.96 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 1.42 Total: -6.84 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -73.03 -0.39 -73.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482126765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.355 kcal (2) G-P(sol) polarization free energy of solvation -73.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds