Wall clock time and date at job start Tue Mar 31 2020 18:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46962 * 2 1 4 4 C 1.53004 * 109.47010 * 120.00061 * 2 1 3 5 5 N 1.46500 * 109.46871 * 294.99815 * 4 2 1 6 6 C 1.36939 * 120.00075 * 179.72595 * 5 4 2 7 7 H 1.07995 * 119.99724 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00199 * 179.97438 * 6 5 4 9 9 N 1.31623 * 119.99862 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00040 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46909 * 60.00217 * 10 8 6 12 12 H 1.48500 * 109.47005 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47296 * 300.00413 * 10 8 6 14 14 C 1.53005 * 109.47047 * 239.99955 * 2 1 3 15 15 N 1.46490 * 109.47181 * 65.00073 * 14 2 1 16 16 C 1.34781 * 119.99837 * 180.02562 * 15 14 2 17 17 O 1.21278 * 120.00191 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99893 * 180.02562 * 16 15 14 19 19 H 1.08999 * 109.50877 * 33.39530 * 18 16 15 20 20 C 1.53104 * 109.50768 * 273.26584 * 18 16 15 21 21 O 1.43010 * 109.26171 * 183.21459 * 20 18 16 22 22 C 1.43023 * 113.73446 * 58.66998 * 21 20 18 23 23 C 1.53090 * 109.26008 * 301.33103 * 22 21 20 24 24 N 1.47009 * 109.26065 * 56.84668 * 23 22 21 25 25 C 1.46895 * 111.00188 * 177.60677 * 24 23 22 26 26 C 1.53001 * 109.47242 * 287.00604 * 25 24 23 27 27 F 1.39900 * 109.47156 * 305.64945 * 26 25 24 28 28 F 1.39896 * 109.47203 * 65.65293 * 26 25 24 29 29 H 1.08998 * 109.46797 * 60.00653 * 1 2 3 30 30 H 1.09005 * 109.47179 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47198 * 300.00117 * 1 2 3 32 32 H 1.08996 * 109.46671 * 175.00314 * 4 2 1 33 33 H 1.08994 * 109.47419 * 54.99809 * 4 2 1 34 34 H 0.97004 * 120.00010 * 0.02562 * 5 4 2 35 35 H 0.97000 * 120.00008 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.46782 * 185.00224 * 14 2 1 37 37 H 1.08997 * 109.46973 * 304.99708 * 14 2 1 38 38 H 0.96998 * 120.00385 * 359.97438 * 15 14 2 39 39 H 1.09004 * 109.50363 * 303.15594 * 20 18 16 40 40 H 1.09005 * 109.50182 * 63.28243 * 20 18 16 41 41 H 1.09004 * 109.50131 * 181.39329 * 22 21 20 42 42 H 1.08998 * 109.50176 * 61.26559 * 22 21 20 43 43 H 1.09004 * 109.50521 * 296.91010 * 23 22 21 44 44 H 1.09001 * 109.54555 * 176.80747 * 23 22 21 45 45 H 1.08999 * 109.47359 * 47.00861 * 25 24 23 46 46 H 1.09003 * 109.47807 * 167.00740 * 25 24 23 47 47 H 1.09005 * 109.47299 * 185.65361 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0354 2.4424 6 6 1.9966 -0.4234 3.6859 7 1 2.5541 -1.3428 3.7870 8 6 1.6299 0.2938 4.8163 9 7 0.9508 1.4146 4.6930 10 14 2.0987 -0.3324 6.5126 11 1 3.5772 -0.4293 6.6132 12 1 1.5924 0.6076 7.5446 13 1 1.4990 -1.6736 6.7284 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0353 -2.4423 16 6 1.9956 -0.4138 -3.6660 17 8 2.6256 -1.4439 -3.7792 18 6 1.5975 0.3648 -4.8933 19 1 1.6017 1.4307 -4.6654 20 6 0.1940 -0.0589 -5.3345 21 8 -0.1485 0.6277 -6.5414 22 6 0.7583 0.3831 -7.6200 23 6 2.1674 0.8112 -7.2020 24 7 2.5502 0.0911 -5.9789 25 6 3.9208 0.4315 -5.5746 26 6 4.9142 -0.2326 -6.5302 27 9 4.6615 -1.6075 -6.5842 28 9 4.7715 0.3184 -7.8082 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7994 1.2056 33 1 1.6054 -1.7198 1.2952 34 1 1.1482 0.8591 2.3517 35 1 0.6942 1.9156 5.4830 36 1 3.1263 -0.7995 -1.2056 37 1 1.6054 -1.7198 -1.2951 38 1 1.1483 0.8590 -2.3518 39 1 0.1769 -1.1346 -5.5102 40 1 -0.5246 0.1947 -4.5551 41 1 0.4478 0.9563 -8.4936 42 1 0.7576 -0.6797 -7.8621 43 1 2.1803 1.8844 -7.0116 44 1 2.8720 0.5746 -7.9993 45 1 4.0516 1.5131 -5.6085 46 1 4.0995 0.0756 -4.5600 47 1 5.9302 -0.0637 -6.1732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482126766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:15 Heat of formation + Delta-G solvation = -163.064669 kcal Electronic energy + Delta-G solvation = -29920.759521 eV Core-core repulsion = 25388.838337 eV Total energy + Delta-G solvation = -4531.921184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.19153 -47.13494 -40.82944 -39.00923 -36.98010 -36.11561 -34.43646 -32.75081 -31.76341 -30.78863 -30.01536 -27.03822 -26.43580 -25.65407 -24.63571 -22.77537 -22.58412 -21.39164 -20.56184 -19.81308 -18.22600 -17.72620 -17.39580 -17.12257 -16.91712 -16.65436 -16.41931 -15.91624 -15.47594 -15.19654 -14.95184 -14.65908 -14.45972 -14.22687 -14.16848 -14.06139 -13.67344 -13.48946 -13.23184 -13.07616 -12.91704 -12.64215 -12.55938 -12.29645 -12.16773 -12.08564 -11.87292 -11.50650 -11.10574 -10.94170 -10.88783 -10.74962 -10.62225 -10.48336 -10.24710 -10.09806 -9.82414 -9.67982 -9.15746 -8.94102 -8.90402 -6.95984 -5.80088 -3.08719 2.33788 2.72921 3.12644 3.42486 3.46741 3.47484 3.48243 3.55527 3.91091 4.13634 4.37813 4.42209 4.50754 4.52817 4.56438 4.62873 4.81397 4.82189 4.98924 5.02438 5.13895 5.14602 5.22592 5.27517 5.31914 5.40322 5.49095 5.54515 5.74532 5.89190 5.90188 6.04459 6.16720 6.17982 6.31570 6.33933 6.39092 6.60275 6.64573 6.71964 6.81355 7.33153 7.67124 8.03442 8.39081 9.50297 10.07113 10.41781 11.42829 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.002124 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.770926 B =13179.710302 C =14029.539005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.127 3.873 15 N -0.723 5.723 16 C 0.512 3.488 17 O -0.513 6.513 18 C 0.032 3.968 19 H 0.073 0.927 20 C 0.078 3.922 21 O -0.378 6.378 22 C 0.062 3.938 23 C 0.002 3.998 24 N -0.508 5.508 25 C -0.002 4.002 26 C 0.274 3.726 27 F -0.188 7.188 28 F -0.208 7.208 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.020 0.980 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.401 0.599 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.110 0.890 45 H 0.067 0.933 46 H 0.111 0.889 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.538 1.347 -27.539 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.004 3.996 15 N -0.376 5.376 16 C 0.295 3.705 17 O -0.387 6.387 18 C -0.080 4.080 19 H 0.090 0.910 20 C 0.000 4.000 21 O -0.296 6.296 22 C -0.015 4.015 23 C -0.125 4.125 24 N -0.233 5.233 25 C -0.131 4.131 26 C 0.220 3.780 27 F -0.169 7.169 28 F -0.190 7.190 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.235 0.765 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.128 0.872 45 H 0.085 0.915 46 H 0.129 0.871 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.879 0.080 -27.621 27.771 hybrid contribution 0.138 1.096 1.214 1.641 sum 3.017 1.177 -26.407 26.605 Atomic orbital electron populations 1.21795 0.94582 1.02009 1.01523 1.21559 0.96789 1.00455 0.94158 0.90562 1.20568 0.96585 0.94222 0.85362 1.42329 1.67058 1.27593 1.00555 1.19188 1.29013 1.05275 0.83639 0.91204 1.24737 1.01004 0.97358 0.97886 1.69644 1.43640 1.16417 1.28655 0.86250 0.78014 0.77739 0.84084 1.21255 1.21687 1.21237 1.21444 1.00135 0.95348 0.82705 1.46145 1.57612 1.28002 1.05840 1.20126 0.80344 0.86047 0.83957 1.90767 1.38451 1.23269 1.86231 1.22355 0.95451 0.99182 0.91009 0.90960 1.22543 0.92062 0.97740 0.87631 1.88028 1.50425 1.70743 1.20401 1.22733 0.87435 1.01642 0.89707 1.23294 0.99231 0.96545 0.93477 1.61879 1.00371 1.57642 1.03441 1.23351 0.89084 0.99628 1.00997 1.21851 1.00261 0.76167 0.79769 1.93041 1.95909 1.31565 1.96365 1.92871 1.96810 1.85540 1.43749 0.93922 0.92746 0.91102 0.96174 0.95979 0.78211 0.93453 0.91308 0.91137 0.76482 0.91141 0.87548 0.87938 0.91769 0.93467 0.87196 0.91515 0.87065 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.94 37.16 0.33 -1.63 16 2 C -0.11 -1.59 2.46 -90.61 -0.22 -1.81 16 3 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 4 C 0.16 3.08 5.65 -4.04 -0.02 3.06 16 5 N -0.73 -17.91 5.33 -59.91 -0.32 -18.22 16 6 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 7 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 10 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.13 1.60 5.06 -4.04 -0.02 1.58 16 15 N -0.72 -7.40 5.28 -60.30 -0.32 -7.72 16 16 C 0.51 5.79 5.78 -10.98 -0.06 5.73 16 17 O -0.51 -7.79 15.49 5.56 0.09 -7.70 16 18 C 0.03 0.29 2.38 -68.75 -0.16 0.13 16 19 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 20 C 0.08 0.69 6.27 37.21 0.23 0.93 16 21 O -0.38 -3.57 10.83 -35.23 -0.38 -3.95 16 22 C 0.06 0.48 7.01 37.20 0.26 0.74 16 23 C 0.00 0.02 5.33 -3.72 -0.02 0.00 16 24 N -0.51 -4.87 4.05 -227.73 -0.92 -5.79 16 25 C 0.00 -0.01 5.00 -3.83 -0.02 -0.03 16 26 C 0.27 2.24 5.56 37.16 0.21 2.45 16 27 F -0.19 -2.24 17.16 2.25 0.04 -2.20 16 28 F -0.21 -1.79 14.51 2.25 0.03 -1.76 16 29 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.38 9.78 6.85 -40.82 -0.28 9.50 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.40 3.25 7.65 -40.82 -0.31 2.94 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.11 0.86 5.43 -51.93 -0.28 0.58 16 45 H 0.07 0.43 8.04 -51.93 -0.42 0.01 16 46 H 0.11 1.09 5.91 -51.93 -0.31 0.78 16 47 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -33.62 381.75 -7.46 -41.08 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.39 Total: 6.57 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 0.25 Total: 3.85 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.84 Total: -58.84 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.30 Total: -11.66 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.07 Total: -3.96 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.62 -7.46 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482126766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.984 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds