Wall clock time and date at job start Tue Mar 31 2020 18:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46962 * 2 1 4 4 C 1.53004 * 109.47010 * 120.00061 * 2 1 3 5 5 N 1.46500 * 109.46871 * 294.99815 * 4 2 1 6 6 C 1.36939 * 120.00075 * 179.72595 * 5 4 2 7 7 H 1.07995 * 119.99724 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00199 * 179.97438 * 6 5 4 9 9 N 1.31623 * 119.99862 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00040 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46909 * 60.00217 * 10 8 6 12 12 H 1.48500 * 109.47005 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47296 * 300.00413 * 10 8 6 14 14 C 1.53005 * 109.47047 * 239.99955 * 2 1 3 15 15 N 1.46490 * 109.47181 * 65.00073 * 14 2 1 16 16 C 1.34781 * 119.99837 * 180.02562 * 15 14 2 17 17 O 1.21278 * 120.00191 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99893 * 180.02562 * 16 15 14 19 19 H 1.08999 * 109.50877 * 33.39530 * 18 16 15 20 20 C 1.53104 * 109.50768 * 273.26584 * 18 16 15 21 21 O 1.43010 * 109.26171 * 183.21459 * 20 18 16 22 22 C 1.43023 * 113.73446 * 58.66998 * 21 20 18 23 23 C 1.53090 * 109.26008 * 301.33103 * 22 21 20 24 24 N 1.47009 * 109.26065 * 56.84668 * 23 22 21 25 25 C 1.46895 * 111.00188 * 177.60677 * 24 23 22 26 26 C 1.53001 * 109.47242 * 287.00604 * 25 24 23 27 27 F 1.39900 * 109.47156 * 305.64945 * 26 25 24 28 28 F 1.39896 * 109.47203 * 65.65293 * 26 25 24 29 29 H 1.08998 * 109.46797 * 60.00653 * 1 2 3 30 30 H 1.09005 * 109.47179 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47198 * 300.00117 * 1 2 3 32 32 H 1.08996 * 109.46671 * 175.00314 * 4 2 1 33 33 H 1.08994 * 109.47419 * 54.99809 * 4 2 1 34 34 H 0.97004 * 120.00010 * 0.02562 * 5 4 2 35 35 H 0.97000 * 120.00008 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.46782 * 185.00224 * 14 2 1 37 37 H 1.08997 * 109.46973 * 304.99708 * 14 2 1 38 38 H 0.96998 * 120.00385 * 359.97438 * 15 14 2 39 39 H 1.09004 * 109.50363 * 303.15594 * 20 18 16 40 40 H 1.09005 * 109.50182 * 63.28243 * 20 18 16 41 41 H 1.09004 * 109.50131 * 181.39329 * 22 21 20 42 42 H 1.08998 * 109.50176 * 61.26559 * 22 21 20 43 43 H 1.09004 * 109.50521 * 296.91010 * 23 22 21 44 44 H 1.09001 * 109.54555 * 176.80747 * 23 22 21 45 45 H 1.08999 * 109.47359 * 47.00861 * 25 24 23 46 46 H 1.09003 * 109.47807 * 167.00740 * 25 24 23 47 47 H 1.09005 * 109.47299 * 185.65361 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0354 2.4424 6 6 1.9966 -0.4234 3.6859 7 1 2.5541 -1.3428 3.7870 8 6 1.6299 0.2938 4.8163 9 7 0.9508 1.4146 4.6930 10 14 2.0987 -0.3324 6.5126 11 1 3.5772 -0.4293 6.6132 12 1 1.5924 0.6076 7.5446 13 1 1.4990 -1.6736 6.7284 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0353 -2.4423 16 6 1.9956 -0.4138 -3.6660 17 8 2.6256 -1.4439 -3.7792 18 6 1.5975 0.3648 -4.8933 19 1 1.6017 1.4307 -4.6654 20 6 0.1940 -0.0589 -5.3345 21 8 -0.1485 0.6277 -6.5414 22 6 0.7583 0.3831 -7.6200 23 6 2.1674 0.8112 -7.2020 24 7 2.5502 0.0911 -5.9789 25 6 3.9208 0.4315 -5.5746 26 6 4.9142 -0.2326 -6.5302 27 9 4.6615 -1.6075 -6.5842 28 9 4.7715 0.3184 -7.8082 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7994 1.2056 33 1 1.6054 -1.7198 1.2952 34 1 1.1482 0.8591 2.3517 35 1 0.6942 1.9156 5.4830 36 1 3.1263 -0.7995 -1.2056 37 1 1.6054 -1.7198 -1.2951 38 1 1.1483 0.8590 -2.3518 39 1 0.1769 -1.1346 -5.5102 40 1 -0.5246 0.1947 -4.5551 41 1 0.4478 0.9563 -8.4936 42 1 0.7576 -0.6797 -7.8621 43 1 2.1803 1.8844 -7.0116 44 1 2.8720 0.5746 -7.9993 45 1 4.0516 1.5131 -5.6085 46 1 4.0995 0.0756 -4.5600 47 1 5.9302 -0.0637 -6.1732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482126766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:14 Heat of formation + Delta-G solvation = -188.681634 kcal Electronic energy + Delta-G solvation = -29921.870356 eV Core-core repulsion = 25388.838337 eV Total energy + Delta-G solvation = -4533.032019 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.181 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.87732 -47.86460 -41.62843 -39.84480 -38.23175 -36.87684 -35.93508 -34.19890 -32.71310 -31.72640 -31.37332 -27.96774 -27.45820 -26.98517 -25.66259 -24.23649 -23.40465 -22.23167 -21.57849 -20.90514 -19.30537 -18.78485 -18.40654 -18.01701 -17.80091 -17.45437 -17.18397 -16.80657 -16.46033 -16.39337 -15.91561 -15.78674 -15.47529 -15.36895 -15.17618 -15.02158 -14.84169 -14.69243 -14.24575 -14.19115 -13.83099 -13.71884 -13.56430 -13.35405 -13.26172 -12.95838 -12.79379 -12.76724 -12.51944 -12.22034 -12.19650 -12.13370 -11.98027 -11.70753 -11.65113 -11.52418 -11.01588 -10.93220 -10.63782 -10.12484 -9.57401 -8.99150 -7.95519 -5.23568 1.45910 1.47854 1.50288 1.56408 1.90300 2.43991 2.56673 2.84683 2.93720 3.33568 3.38221 3.52247 3.65164 3.70552 3.73448 3.86687 3.91822 3.97546 4.02662 4.08606 4.21302 4.22260 4.35629 4.41291 4.50142 4.55423 4.61423 4.64184 4.71676 4.78419 4.81495 4.89188 4.95005 5.05757 5.13715 5.31639 5.40254 5.48753 5.50375 5.53660 5.72062 6.00051 6.27359 6.49938 7.17151 7.34291 8.09828 8.33724 9.27708 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.002124 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.770926 B =13179.710302 C =14029.539005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.080 0.920 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.247 4.247 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.972 3.028 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.141 3.859 15 N -0.710 5.710 16 C 0.517 3.483 17 O -0.554 6.554 18 C 0.039 3.961 19 H 0.094 0.906 20 C 0.079 3.921 21 O -0.387 6.387 22 C 0.058 3.942 23 C 0.007 3.993 24 N -0.530 5.530 25 C -0.001 4.001 26 C 0.267 3.733 27 F -0.213 7.213 28 F -0.211 7.211 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.414 0.586 39 H 0.053 0.947 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.726 2.082 -28.543 28.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.098 0.902 4 C 0.029 3.971 5 N -0.385 5.385 6 C -0.379 4.379 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.801 3.199 11 H -0.205 1.205 12 H -0.221 1.221 13 H -0.205 1.205 14 C 0.016 3.984 15 N -0.364 5.364 16 C 0.302 3.698 17 O -0.431 6.431 18 C -0.072 4.072 19 H 0.112 0.888 20 C 0.001 3.999 21 O -0.305 6.305 22 C -0.018 4.018 23 C -0.120 4.120 24 N -0.257 5.257 25 C -0.130 4.130 26 C 0.213 3.787 27 F -0.195 7.195 28 F -0.192 7.192 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.209 0.791 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.252 0.748 39 H 0.071 0.929 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.127 0.873 45 H 0.108 0.892 46 H 0.114 0.886 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.067 0.815 -28.655 28.831 hybrid contribution 0.101 0.834 1.444 1.671 sum 3.168 1.648 -27.211 27.445 Atomic orbital electron populations 1.21736 0.93897 1.01926 1.01814 1.21332 0.97144 1.00088 0.92712 0.90182 1.20727 0.96527 0.94097 0.85711 1.42503 1.66910 1.27748 1.01308 1.19583 1.28111 1.05118 0.85097 0.90921 1.25527 1.01729 0.97871 1.01468 1.69790 1.45184 1.17665 1.29200 0.85239 0.77902 0.77166 0.79623 1.20464 1.22055 1.20528 1.21125 0.99610 0.94975 0.82680 1.45954 1.57351 1.28173 1.04910 1.20479 0.79299 0.85471 0.84543 1.90757 1.40372 1.25208 1.86781 1.22307 0.95378 0.99753 0.89809 0.88813 1.22575 0.92419 0.96791 0.88135 1.88020 1.50983 1.70722 1.20745 1.22878 0.87362 1.01564 0.90018 1.23276 0.99098 0.96908 0.92746 1.61863 1.00975 1.58765 1.04066 1.23359 0.88607 1.00910 1.00111 1.22276 1.02072 0.74683 0.79642 1.92987 1.96181 1.33797 1.96489 1.92861 1.96939 1.85397 1.44008 0.90347 0.93029 0.94019 0.96241 0.96238 0.79060 0.93946 0.91910 0.91811 0.74843 0.92868 0.85773 0.85709 0.92747 0.92395 0.87301 0.89177 0.88557 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.94 71.98 0.64 -2.95 16 2 C -0.09 -2.58 2.46 -10.79 -0.03 -2.61 16 3 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 4 C 0.16 5.94 5.65 86.38 0.49 6.43 16 5 N -0.74 -36.49 5.33 -343.46 -1.83 -38.33 16 6 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 7 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 8 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 9 N -0.97 -58.16 13.06 21.65 0.28 -57.88 16 10 Si 0.97 45.71 29.55 68.60 2.03 47.73 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 14 C 0.14 3.34 5.06 86.38 0.44 3.78 16 15 N -0.71 -13.06 5.28 -463.08 -2.45 -15.51 16 16 C 0.52 10.96 5.78 87.66 0.51 11.47 16 17 O -0.55 -16.63 15.49 -3.02 -0.05 -16.67 16 18 C 0.04 0.64 2.38 44.18 0.11 0.75 16 19 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 20 C 0.08 1.27 6.27 72.02 0.45 1.72 16 21 O -0.39 -6.56 10.83 -148.98 -1.61 -8.17 16 22 C 0.06 0.80 7.01 72.01 0.50 1.31 16 23 C 0.01 0.09 5.33 86.31 0.46 0.55 16 24 N -0.53 -9.41 4.05 -874.41 -3.54 -12.95 16 25 C 0.00 -0.02 5.00 86.30 0.43 0.41 16 26 C 0.27 4.02 5.56 71.98 0.40 4.42 16 27 F -0.21 -5.05 17.16 44.97 0.77 -4.27 16 28 F -0.21 -3.31 14.51 44.97 0.65 -2.66 16 29 H 0.08 1.49 7.18 -2.39 -0.02 1.47 16 30 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.04 1.36 7.18 -2.39 -0.02 1.34 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.38 19.41 6.85 -92.71 -0.63 18.78 16 35 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.41 5.45 7.65 -92.71 -0.71 4.74 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 44 H 0.11 1.54 5.43 -2.39 -0.01 1.53 16 45 H 0.09 0.92 8.04 -2.39 -0.02 0.90 16 46 H 0.10 1.78 5.91 -2.39 -0.01 1.76 16 47 H 0.15 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -72.84 381.75 -0.38 -73.23 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -0.35 Total: 26.74 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 5.71 Total: 8.74 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -7.53 Total: -124.66 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -1.66 Total: -24.85 kcal Atomic # 9 Polarization: -8.36 SS G_CDS: 1.42 Total: -6.93 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -72.84 -0.38 -73.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482126766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.455 kcal (2) G-P(sol) polarization free energy of solvation -72.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds