Wall clock time and date at job start Tue Mar 31 2020 18:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47473 * 2 1 4 4 C 1.52999 * 109.47172 * 239.99444 * 2 1 3 5 5 N 1.46900 * 109.47296 * 184.99919 * 4 2 1 6 6 C 1.46901 * 111.00268 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47339 * 180.02562 * 6 5 4 8 8 O 1.21295 * 119.99683 * 359.97438 * 7 6 5 9 9 N 1.34770 * 119.99929 * 180.02562 * 7 6 5 10 10 C 1.37105 * 119.99730 * 179.97438 * 9 7 6 11 11 H 1.07989 * 120.00394 * 0.02562 * 10 9 7 12 12 C 1.38959 * 119.99571 * 179.97438 * 10 9 7 13 13 N 1.31408 * 119.99878 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 119.99607 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47537 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47001 * 120.00463 * 14 12 10 17 17 H 1.48503 * 109.47137 * 240.00055 * 14 12 10 18 18 N 1.46504 * 109.46996 * 119.99642 * 2 1 3 19 19 C 1.34778 * 120.00338 * 274.99558 * 18 2 1 20 20 O 1.21290 * 119.99708 * 0.02562 * 19 18 2 21 21 C 1.50693 * 120.00264 * 179.97438 * 19 18 2 22 22 H 1.08995 * 115.56374 * 34.31670 * 21 19 18 23 23 C 1.52999 * 117.50064 * 248.62816 * 21 19 18 24 24 C 1.53001 * 117.49880 * 180.02562 * 21 19 18 25 25 H 1.09002 * 117.49822 * 0.02562 * 24 21 19 26 26 C 1.50701 * 117.51956 * 214.97025 * 24 21 19 27 27 C 1.34665 * 126.58994 * 325.15011 * 26 24 21 28 28 N 1.34132 * 108.02021 * 179.97438 * 27 26 24 29 29 C 1.30497 * 109.25812 * 359.97438 * 28 27 26 30 30 N 1.35051 * 108.69741 * 359.76544 * 29 28 27 31 31 H 0.96995 * 126.39948 * 180.26678 * 30 29 28 32 32 H 1.08994 * 109.47100 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47020 * 300.00398 * 1 2 3 34 34 H 1.08993 * 109.46983 * 59.99823 * 1 2 3 35 35 H 1.08998 * 109.47423 * 305.00011 * 4 2 1 36 36 H 1.08997 * 109.46850 * 65.00178 * 4 2 1 37 37 H 1.00898 * 111.00382 * 303.95722 * 5 4 2 38 38 H 1.09006 * 109.46767 * 300.00136 * 6 5 4 39 39 H 1.08994 * 109.46874 * 59.99558 * 6 5 4 40 40 H 0.97003 * 120.00554 * 359.97438 * 9 7 6 41 41 H 0.97008 * 119.99535 * 179.97438 * 13 12 10 42 42 H 0.97005 * 120.00291 * 95.00327 * 18 2 1 43 43 H 1.09004 * 117.50150 * 145.02538 * 23 21 19 44 44 H 1.09004 * 117.51638 * 359.97438 * 23 21 19 45 45 H 1.08003 * 125.99208 * 359.95314 * 27 26 24 46 46 H 1.07996 * 125.65682 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5040 -0.8268 -1.1904 6 6 4.0304 -1.5150 -2.3766 7 6 5.5316 -1.6046 -2.2806 8 8 6.1066 -1.1403 -1.3188 9 7 6.2354 -2.1997 -3.2639 10 6 7.6013 -2.2807 -3.1767 11 1 8.1132 -1.8681 -2.3201 12 6 8.3269 -2.8948 -4.1903 13 7 7.7039 -3.3973 -5.2325 14 14 10.1878 -3.0045 -4.0720 15 1 10.6421 -2.3672 -2.8099 16 1 10.6012 -4.4308 -4.0825 17 1 10.7997 -2.3033 -5.2292 18 7 2.0183 -0.6906 1.1963 19 6 2.1471 -0.0182 2.3572 20 8 1.8583 1.1586 2.4117 21 6 2.6488 -0.7286 3.5878 22 1 3.3926 -1.5057 3.4119 23 6 1.6564 -0.9468 4.7316 24 6 2.7723 0.0894 4.8748 25 1 2.4903 1.1414 4.8315 26 6 3.9132 -0.2402 5.8027 27 6 4.4325 -1.4610 6.0342 28 7 5.4303 -1.3262 6.9204 29 6 5.5494 -0.0682 7.2464 30 7 4.6251 0.6445 6.5670 31 1 4.4895 1.6038 6.6136 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.6054 -1.7199 -1.2950 36 1 1.7516 -0.1585 -2.1369 37 1 3.9280 0.0824 -1.0824 38 1 3.6096 -2.5191 -2.4307 39 1 3.7558 -0.9574 -3.2719 40 1 5.7757 -2.5707 -4.0333 41 1 8.2106 -3.8257 -5.9403 42 1 2.2490 -1.6318 1.1528 43 1 1.7473 -1.8674 5.3082 44 1 0.6405 -0.5762 4.5945 45 1 4.1031 -2.3864 5.5853 46 1 6.2706 0.3366 7.9409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483137238.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:50 Heat of formation + Delta-G solvation = 8.159255 kcal Electronic energy + Delta-G solvation = -27727.299448 eV Core-core repulsion = 23653.492277 eV Total energy + Delta-G solvation = -4073.807171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.29177 -40.11486 -38.37376 -37.37924 -36.17519 -34.29646 -33.66071 -32.71058 -31.30053 -31.06931 -29.41525 -27.62429 -25.25286 -24.68080 -23.55404 -23.19395 -21.83382 -21.27128 -20.65401 -20.05993 -19.24699 -18.37186 -17.91205 -17.26767 -16.70276 -15.90864 -15.29203 -15.23256 -15.15309 -14.71247 -14.68287 -14.55964 -14.25029 -14.14985 -13.88010 -13.69296 -13.51853 -13.28639 -12.75102 -12.61052 -12.52420 -12.27294 -12.03682 -11.83099 -11.57091 -11.49820 -11.28137 -11.06545 -10.98621 -10.88721 -10.34802 -10.23583 -10.20572 -10.19272 -9.91651 -9.53195 -9.07852 -8.50981 -8.46972 -8.12967 -7.97644 -6.43237 -3.83938 1.67453 2.45713 2.77339 2.93082 3.14918 3.15837 3.26653 3.34181 3.73274 3.88888 4.03227 4.24977 4.31004 4.44157 4.55935 4.58359 4.74012 4.84202 4.95698 5.04280 5.08438 5.12649 5.21071 5.26149 5.30592 5.37410 5.42080 5.53147 5.56188 5.64200 5.68250 5.75168 5.87101 5.92971 6.01120 6.05629 6.23332 6.47537 6.49075 7.11501 7.11942 7.53104 7.54399 7.56552 7.83980 8.05173 8.21944 8.59602 9.16804 9.52732 10.04034 10.74564 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008968 B = 0.002501 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.311075 B =11194.718104 C =13893.321588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.086 0.914 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.700 5.700 19 C 0.547 3.453 20 O -0.552 6.552 21 C -0.171 4.171 22 H 0.133 0.867 23 C -0.133 4.133 24 C -0.055 4.055 25 H 0.124 0.876 26 C 0.010 3.990 27 C -0.020 4.020 28 N -0.492 5.492 29 C 0.184 3.816 30 N -0.565 5.565 31 H 0.420 0.580 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.351 0.649 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.408 0.592 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.169 0.831 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.209 5.638 16.654 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.104 0.896 4 C -0.083 4.083 5 N -0.299 5.299 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.350 5.350 19 C 0.334 3.666 20 O -0.431 6.431 21 C -0.192 4.192 22 H 0.150 0.850 23 C -0.171 4.171 24 C -0.075 4.075 25 H 0.142 0.858 26 C -0.105 4.105 27 C -0.168 4.168 28 N -0.210 5.210 29 C -0.100 4.100 30 N -0.168 5.168 31 H 0.258 0.742 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.170 0.830 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.243 0.757 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.186 0.814 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -15.433 5.430 17.835 24.202 hybrid contribution 0.282 0.977 -1.695 1.976 sum -15.152 6.407 16.140 23.046 Atomic orbital electron populations 1.22133 0.94956 1.02274 1.02571 1.20954 0.93591 0.97469 0.84008 0.89636 1.22317 0.89583 1.00734 0.95631 1.60069 1.02998 1.26889 1.39969 1.21680 0.95351 0.99861 0.91327 1.19799 0.87999 0.84635 0.85048 1.90538 1.71102 1.51807 1.33153 1.41872 1.07431 1.50991 1.19764 1.19754 0.81489 1.35082 1.06483 0.87882 1.25264 1.00721 0.96748 0.95226 1.69620 1.36624 1.38712 1.09386 0.85805 0.82206 0.77955 0.78425 1.19189 1.20699 1.20769 1.45726 1.66177 1.14481 1.08603 1.19478 0.76854 0.86487 0.83810 1.90672 1.51197 1.15934 1.85248 1.22414 1.04593 1.03692 0.88528 0.84957 1.23129 0.94899 1.00516 0.98540 1.20083 0.94539 0.98746 0.94139 0.85847 1.20294 0.99187 0.90582 1.00485 1.22055 0.96904 0.96829 1.01024 1.70299 1.18622 1.17189 1.14931 1.24991 0.96282 0.87750 1.00971 1.43185 1.27913 1.10863 1.34797 0.74221 0.92228 0.91961 0.91607 0.90378 0.93885 0.82999 0.89563 0.93843 0.77483 0.91920 0.75705 0.87121 0.87607 0.81382 0.77474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.03 16 2 C 0.14 1.54 2.81 -67.93 -0.19 1.35 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.68 16 4 C 0.05 0.51 5.24 -3.82 -0.02 0.49 16 5 N -0.67 -9.99 5.85 -115.06 -0.67 -10.67 16 6 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 7 C 0.44 10.22 7.82 -10.99 -0.09 10.13 16 8 O -0.58 -15.73 15.78 5.54 0.09 -15.64 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 10 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 11 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 14 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 N -0.70 -7.60 4.80 -53.81 -0.26 -7.86 16 19 C 0.55 6.65 7.58 -10.99 -0.08 6.57 16 20 O -0.55 -8.40 15.92 5.55 0.09 -8.31 16 21 C -0.17 -1.66 5.72 -91.77 -0.52 -2.18 16 22 H 0.13 1.25 7.98 -51.93 -0.41 0.84 16 23 C -0.13 -0.99 9.75 -26.75 -0.26 -1.25 16 24 C -0.06 -0.51 5.84 -91.79 -0.54 -1.05 16 25 H 0.12 1.22 7.67 -51.93 -0.40 0.82 16 26 C 0.01 0.10 6.92 -81.60 -0.56 -0.46 16 27 C -0.02 -0.23 10.94 -17.81 -0.19 -0.42 16 28 N -0.49 -6.14 11.25 -14.66 -0.16 -6.31 16 29 C 0.18 1.67 13.04 -90.37 -1.18 0.49 16 30 N -0.56 -4.64 6.15 -10.30 -0.06 -4.71 16 31 H 0.42 2.16 8.96 -40.82 -0.37 1.79 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.35 5.81 8.43 -39.29 -0.33 5.48 16 38 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.41 4.03 8.60 -40.82 -0.35 3.67 16 43 H 0.11 0.67 7.95 -51.93 -0.41 0.26 16 44 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.17 1.63 8.06 -52.48 -0.42 1.20 16 46 H 0.21 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 397.24 15.07 5.99 5.99 Total: -1.00 -36.02 397.24 -9.64 -45.66 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -6.73 Total: 18.27 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -3.56 Total: 5.46 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -0.49 Total: -67.52 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.18 Total: -23.94 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.02 -9.64 -45.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483137238.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.816 kcal (2) G-P(sol) polarization free energy of solvation -36.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds