Wall clock time and date at job start Tue Mar 31 2020 18:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47473 * 2 1 4 4 C 1.52999 * 109.47172 * 239.99444 * 2 1 3 5 5 N 1.46900 * 109.47296 * 184.99919 * 4 2 1 6 6 C 1.46901 * 111.00268 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47339 * 180.02562 * 6 5 4 8 8 O 1.21295 * 119.99683 * 359.97438 * 7 6 5 9 9 N 1.34770 * 119.99929 * 180.02562 * 7 6 5 10 10 C 1.37105 * 119.99730 * 179.97438 * 9 7 6 11 11 H 1.07989 * 120.00394 * 0.02562 * 10 9 7 12 12 C 1.38959 * 119.99571 * 179.97438 * 10 9 7 13 13 N 1.31408 * 119.99878 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 119.99607 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47537 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47001 * 120.00463 * 14 12 10 17 17 H 1.48503 * 109.47137 * 240.00055 * 14 12 10 18 18 N 1.46504 * 109.46996 * 119.99642 * 2 1 3 19 19 C 1.34778 * 120.00338 * 274.99558 * 18 2 1 20 20 O 1.21290 * 119.99708 * 0.02562 * 19 18 2 21 21 C 1.50693 * 120.00264 * 179.97438 * 19 18 2 22 22 H 1.08995 * 115.56374 * 34.31670 * 21 19 18 23 23 C 1.52999 * 117.50064 * 248.62816 * 21 19 18 24 24 C 1.53001 * 117.49880 * 180.02562 * 21 19 18 25 25 H 1.09002 * 117.49822 * 0.02562 * 24 21 19 26 26 C 1.50701 * 117.51956 * 214.97025 * 24 21 19 27 27 C 1.34665 * 126.58994 * 325.15011 * 26 24 21 28 28 N 1.34132 * 108.02021 * 179.97438 * 27 26 24 29 29 C 1.30497 * 109.25812 * 359.97438 * 28 27 26 30 30 N 1.35051 * 108.69741 * 359.76544 * 29 28 27 31 31 H 0.96995 * 126.39948 * 180.26678 * 30 29 28 32 32 H 1.08994 * 109.47100 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47020 * 300.00398 * 1 2 3 34 34 H 1.08993 * 109.46983 * 59.99823 * 1 2 3 35 35 H 1.08998 * 109.47423 * 305.00011 * 4 2 1 36 36 H 1.08997 * 109.46850 * 65.00178 * 4 2 1 37 37 H 1.00898 * 111.00382 * 303.95722 * 5 4 2 38 38 H 1.09006 * 109.46767 * 300.00136 * 6 5 4 39 39 H 1.08994 * 109.46874 * 59.99558 * 6 5 4 40 40 H 0.97003 * 120.00554 * 359.97438 * 9 7 6 41 41 H 0.97008 * 119.99535 * 179.97438 * 13 12 10 42 42 H 0.97005 * 120.00291 * 95.00327 * 18 2 1 43 43 H 1.09004 * 117.50150 * 145.02538 * 23 21 19 44 44 H 1.09004 * 117.51638 * 359.97438 * 23 21 19 45 45 H 1.08003 * 125.99208 * 359.95314 * 27 26 24 46 46 H 1.07996 * 125.65682 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5040 -0.8268 -1.1904 6 6 4.0304 -1.5150 -2.3766 7 6 5.5316 -1.6046 -2.2806 8 8 6.1066 -1.1403 -1.3188 9 7 6.2354 -2.1997 -3.2639 10 6 7.6013 -2.2807 -3.1767 11 1 8.1132 -1.8681 -2.3201 12 6 8.3269 -2.8948 -4.1903 13 7 7.7039 -3.3973 -5.2325 14 14 10.1878 -3.0045 -4.0720 15 1 10.6421 -2.3672 -2.8099 16 1 10.6012 -4.4308 -4.0825 17 1 10.7997 -2.3033 -5.2292 18 7 2.0183 -0.6906 1.1963 19 6 2.1471 -0.0182 2.3572 20 8 1.8583 1.1586 2.4117 21 6 2.6488 -0.7286 3.5878 22 1 3.3926 -1.5057 3.4119 23 6 1.6564 -0.9468 4.7316 24 6 2.7723 0.0894 4.8748 25 1 2.4903 1.1414 4.8315 26 6 3.9132 -0.2402 5.8027 27 6 4.4325 -1.4610 6.0342 28 7 5.4303 -1.3262 6.9204 29 6 5.5494 -0.0682 7.2464 30 7 4.6251 0.6445 6.5670 31 1 4.4895 1.6038 6.6136 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.6054 -1.7199 -1.2950 36 1 1.7516 -0.1585 -2.1369 37 1 3.9280 0.0824 -1.0824 38 1 3.6096 -2.5191 -2.4307 39 1 3.7558 -0.9574 -3.2719 40 1 5.7757 -2.5707 -4.0333 41 1 8.2106 -3.8257 -5.9403 42 1 2.2490 -1.6318 1.1528 43 1 1.7473 -1.8674 5.3082 44 1 0.6405 -0.5762 4.5945 45 1 4.1031 -2.3864 5.5853 46 1 6.2706 0.3366 7.9409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483137238.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:49 Heat of formation + Delta-G solvation = -19.493845 kcal Electronic energy + Delta-G solvation = -27728.498577 eV Core-core repulsion = 23653.492277 eV Total energy + Delta-G solvation = -4075.006300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.02570 -41.02969 -40.14078 -38.31097 -37.16368 -36.02289 -35.08540 -33.46173 -33.26389 -32.04597 -30.16454 -28.95760 -26.73588 -25.72612 -24.49878 -24.23082 -22.56636 -22.11977 -21.46671 -21.03944 -20.88818 -19.90759 -19.10855 -18.21179 -17.85560 -17.37731 -16.62440 -16.38392 -16.15964 -15.91615 -15.88727 -15.60330 -15.48147 -15.10375 -14.99010 -14.89634 -14.57984 -14.42211 -14.05267 -13.56916 -13.54232 -13.35067 -13.08620 -12.99580 -12.93348 -12.79421 -12.70416 -12.41288 -12.12916 -12.00726 -11.83901 -11.64929 -11.51867 -11.00392 -10.95036 -10.87582 -10.35873 -10.01645 -9.98360 -9.35249 -9.22874 -8.47781 -5.96051 0.94325 1.35602 1.41167 1.55021 1.57210 2.05739 2.07367 2.15860 2.28286 2.36791 2.90084 2.98418 3.19929 3.50485 3.60233 3.70293 3.81383 3.88841 3.93964 4.11008 4.18624 4.20560 4.33527 4.39531 4.46544 4.52791 4.57902 4.59937 4.66233 4.76747 4.77711 4.82167 4.90490 5.03930 5.08727 5.29339 5.31701 5.40557 5.60117 5.73179 5.87018 6.08985 6.30847 6.52661 6.59912 6.64787 7.10118 7.12691 7.31426 7.56579 8.12368 8.69815 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008968 B = 0.002501 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.311075 B =11194.718104 C =13893.321588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.145 3.855 3 H 0.061 0.939 4 C 0.054 3.946 5 N -0.679 5.679 6 C 0.066 3.934 7 C 0.436 3.564 8 O -0.625 6.625 9 N -0.574 5.574 10 C -0.333 4.333 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.990 3.010 15 H -0.275 1.275 16 H -0.270 1.270 17 H -0.270 1.270 18 N -0.695 5.695 19 C 0.542 3.458 20 O -0.589 6.589 21 C -0.180 4.180 22 H 0.133 0.867 23 C -0.106 4.106 24 C -0.060 4.060 25 H 0.116 0.884 26 C 0.006 3.994 27 C -0.042 4.042 28 N -0.538 5.538 29 C 0.189 3.811 30 N -0.559 5.559 31 H 0.434 0.566 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.338 0.662 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.413 0.587 43 H 0.129 0.871 44 H 0.113 0.887 45 H 0.175 0.825 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.288 5.132 16.461 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.075 4.075 5 N -0.310 5.310 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.511 6.511 9 N -0.211 5.211 10 C -0.462 4.462 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.814 3.186 15 H -0.200 1.200 16 H -0.195 1.195 17 H -0.196 1.196 18 N -0.345 5.345 19 C 0.330 3.670 20 O -0.470 6.470 21 C -0.202 4.202 22 H 0.151 0.849 23 C -0.143 4.143 24 C -0.080 4.080 25 H 0.134 0.866 26 C -0.111 4.111 27 C -0.190 4.190 28 N -0.258 5.258 29 C -0.094 4.094 30 N -0.163 5.163 31 H 0.274 0.726 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.156 0.844 38 H 0.129 0.871 39 H 0.085 0.915 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.250 0.750 43 H 0.147 0.853 44 H 0.132 0.868 45 H 0.192 0.808 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -16.556 4.905 17.608 24.662 hybrid contribution 0.592 1.181 -1.609 2.082 sum -15.964 6.086 15.999 23.407 Atomic orbital electron populations 1.22045 0.92982 1.03321 1.02607 1.20971 0.94996 0.96135 0.83893 0.92086 1.22393 0.86742 1.02213 0.96196 1.60075 1.05434 1.26175 1.39354 1.21543 0.90186 1.01887 0.92983 1.20973 0.90749 0.82391 0.83487 1.90510 1.72899 1.53072 1.34661 1.41936 1.06800 1.51801 1.20571 1.19665 0.83160 1.36865 1.06532 0.90605 1.25999 1.04762 0.95839 0.94572 1.69669 1.38148 1.38587 1.09647 0.84910 0.77102 0.78366 0.78206 1.20012 1.19502 1.19561 1.45762 1.65563 1.14687 1.08456 1.19872 0.76323 0.86144 0.84674 1.90649 1.53015 1.17463 1.85878 1.22363 1.05887 1.03882 0.88027 0.84888 1.23218 0.94445 1.00383 0.96290 1.20055 0.95354 0.98780 0.93836 0.86587 1.20373 0.99398 0.90622 1.00665 1.22285 0.97368 0.97724 1.01580 1.70268 1.19898 1.19193 1.16401 1.25711 0.96155 0.87077 1.00499 1.43213 1.27339 1.11559 1.34144 0.72574 0.90604 0.93357 0.90157 0.88311 0.92167 0.84380 0.87116 0.91524 0.76899 0.91287 0.75029 0.85333 0.86839 0.80781 0.73917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.48 71.98 0.68 -1.62 16 2 C 0.15 2.91 2.81 44.99 0.13 3.04 16 3 H 0.06 1.55 7.58 -2.39 -0.02 1.53 16 4 C 0.05 1.02 5.24 86.30 0.45 1.48 16 5 N -0.68 -19.48 5.85 -517.94 -3.03 -22.51 16 6 C 0.07 2.10 6.17 85.56 0.53 2.62 16 7 C 0.44 20.34 7.82 87.66 0.69 21.03 16 8 O -0.62 -34.60 15.78 -3.08 -0.05 -34.65 16 9 N -0.57 -29.09 5.29 -306.99 -1.62 -30.71 16 10 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 11 H 0.08 4.65 7.16 -2.92 -0.02 4.63 16 12 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 13 N -0.92 -49.34 13.05 21.67 0.28 -49.05 16 14 Si 0.99 43.15 29.55 68.60 2.03 45.17 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 17 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 18 N -0.70 -14.63 4.80 -442.53 -2.12 -16.76 16 19 C 0.54 13.21 7.58 87.65 0.66 13.88 16 20 O -0.59 -18.29 15.92 -3.06 -0.05 -18.34 16 21 C -0.18 -3.45 5.72 -11.54 -0.07 -3.52 16 22 H 0.13 2.52 7.98 -2.39 -0.02 2.50 16 23 C -0.11 -1.44 9.75 30.58 0.30 -1.15 16 24 C -0.06 -1.11 5.84 -11.55 -0.07 -1.17 16 25 H 0.12 2.31 7.67 -2.39 -0.02 2.29 16 26 C 0.01 0.11 6.92 40.95 0.28 0.40 16 27 C -0.04 -0.96 10.94 83.52 0.91 -0.05 16 28 N -0.54 -13.38 11.25 -200.31 -2.25 -15.63 16 29 C 0.19 3.25 13.04 180.26 2.35 5.60 16 30 N -0.56 -8.77 6.15 -186.49 -1.15 -9.92 16 31 H 0.43 4.07 8.96 -92.71 -0.83 3.24 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.34 11.18 8.43 -89.70 -0.76 10.43 16 38 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.40 18.96 7.90 -92.71 -0.73 18.22 16 41 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16 42 H 0.41 7.70 8.60 -92.70 -0.80 6.91 16 43 H 0.13 1.32 7.95 -2.39 -0.02 1.30 16 44 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 46 H 0.24 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -79.87 397.24 -1.90 -81.77 By element: Atomic # 1 Polarization: 50.44 SS G_CDS: -2.06 Total: 48.37 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 8.13 Total: 22.25 kcal Atomic # 7 Polarization: -134.68 SS G_CDS: -9.90 Total: -144.58 kcal Atomic # 8 Polarization: -52.89 SS G_CDS: -0.10 Total: -52.99 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -79.87 -1.90 -81.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483137238.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.272 kcal (2) G-P(sol) polarization free energy of solvation -79.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds