Wall clock time and date at job start Tue Mar 31 2020 18:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 N 1.46903 * 109.46674 * 184.99895 * 4 2 1 6 6 C 1.46904 * 110.99708 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47015 * 180.02562 * 6 5 4 8 8 O 1.21293 * 120.00256 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00285 * 180.02562 * 7 6 5 10 10 C 1.37091 * 120.00423 * 179.97438 * 9 7 6 11 11 H 1.08005 * 119.99559 * 359.97438 * 10 9 7 12 12 C 1.38946 * 120.00370 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99739 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00230 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47092 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46962 * 120.00186 * 14 12 10 17 17 H 1.48499 * 109.46822 * 240.00140 * 14 12 10 18 18 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 19 19 C 1.34784 * 119.99635 * 274.99773 * 18 2 1 20 20 O 1.21279 * 119.99925 * 359.97438 * 19 18 2 21 21 C 1.50700 * 119.99961 * 180.02562 * 19 18 2 22 22 C 1.52992 * 109.47257 * 180.02562 * 21 19 18 23 23 C 1.50700 * 109.47257 * 179.97438 * 22 21 19 24 24 N 1.31796 * 119.12247 * 269.72863 * 23 22 21 25 25 C 1.32329 * 120.82155 * 179.76224 * 24 23 22 26 26 C 1.38603 * 119.10076 * 0.50118 * 25 24 23 27 27 C 1.38599 * 118.39900 * 359.75239 * 26 25 24 28 28 N 1.31788 * 119.12399 * 90.00188 * 23 22 21 29 29 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 30 30 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 31 31 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47346 * 305.00057 * 4 2 1 33 33 H 1.09001 * 109.46950 * 65.00327 * 4 2 1 34 34 H 1.00898 * 111.00310 * 303.95288 * 5 4 2 35 35 H 1.09000 * 109.47481 * 300.00500 * 6 5 4 36 36 H 1.09002 * 109.46797 * 60.00200 * 6 5 4 37 37 H 0.96997 * 119.99524 * 359.97438 * 9 7 6 38 38 H 0.97006 * 120.00205 * 180.02562 * 13 12 10 39 39 H 0.96995 * 120.00292 * 95.27206 * 18 2 1 40 40 H 1.09004 * 109.46932 * 300.00223 * 21 19 18 41 41 H 1.08997 * 109.47392 * 59.99562 * 21 19 18 42 42 H 1.09004 * 109.47330 * 299.99977 * 22 21 19 43 43 H 1.09005 * 109.47124 * 59.99773 * 22 21 19 44 44 H 1.08001 * 120.45406 * 180.23819 * 25 24 23 45 45 H 1.08005 * 120.79996 * 179.77616 * 26 25 24 46 46 H 1.07999 * 120.44259 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5040 -0.8267 -1.1905 6 6 4.0302 -1.5159 -2.3763 7 6 5.5315 -1.6055 -2.2803 8 8 6.1066 -1.1405 -1.3190 9 7 6.2353 -2.2014 -3.2632 10 6 7.6010 -2.2824 -3.1762 11 1 8.1130 -1.8683 -2.3201 12 6 8.3265 -2.8972 -4.1892 13 7 7.7034 -3.4015 -5.2305 14 14 10.1874 -3.0083 -4.0703 15 1 10.6418 -2.3698 -2.8088 16 1 10.5998 -4.4348 -4.0802 17 1 10.8000 -2.3078 -5.2276 18 7 2.0184 -0.6907 1.1961 19 6 2.1471 -0.0183 2.3571 20 8 1.8591 1.1585 2.4114 21 6 2.6500 -0.7286 3.5874 22 6 2.7008 0.2542 4.7588 23 6 3.2030 -0.4562 5.9892 24 7 2.3350 -1.0325 6.7964 25 6 2.7394 -1.6694 7.8836 26 6 4.0941 -1.7160 8.1729 27 6 4.9757 -1.0939 7.3031 28 7 4.4981 -0.4801 6.2324 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1370 34 1 3.9280 0.0825 -1.0825 35 1 3.6093 -2.5200 -2.4296 36 1 3.7556 -0.9588 -3.2720 37 1 5.7754 -2.5729 -4.0322 38 1 8.2098 -3.8311 -5.9377 39 1 2.2528 -1.6308 1.1515 40 1 1.9778 -1.5510 3.8324 41 1 3.6492 -1.1205 3.3978 42 1 3.3727 1.0769 4.5140 43 1 1.7012 0.6457 4.9482 44 1 2.0232 -2.1429 8.5388 45 1 4.4540 -2.2252 9.0548 46 1 6.0381 -1.1102 7.4963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483179513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:40 Heat of formation + Delta-G solvation = -32.787762 kcal Electronic energy + Delta-G solvation = -27402.067965 eV Core-core repulsion = 23326.485198 eV Total energy + Delta-G solvation = -4075.582767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32961 -39.80808 -38.31325 -36.72883 -34.48630 -34.22427 -33.99974 -33.63785 -31.62649 -31.21183 -30.43918 -27.59144 -26.01969 -24.98660 -24.85208 -23.29741 -22.61288 -21.15520 -20.28240 -19.23839 -17.90506 -17.84832 -17.60797 -16.85278 -16.62921 -15.87267 -15.54116 -15.49491 -15.29894 -14.91430 -14.57987 -14.53614 -14.00075 -13.98624 -13.87373 -13.56050 -13.39774 -13.28301 -12.93579 -12.57303 -12.36442 -12.26130 -11.98298 -11.77691 -11.54035 -11.48639 -11.29129 -11.15340 -11.11144 -11.06392 -10.91518 -10.34825 -10.23184 -9.96952 -9.69232 -9.52782 -9.52547 -8.99790 -8.48513 -8.10548 -7.96934 -6.42699 -3.83391 0.55177 0.77626 2.71581 3.11791 3.15792 3.26452 3.33950 3.47552 3.69104 3.86338 3.89847 4.06116 4.26684 4.29242 4.61696 4.72429 4.75855 4.80530 4.93280 4.96305 5.07980 5.12444 5.20416 5.23699 5.31155 5.38642 5.45341 5.46400 5.58824 5.61867 5.77377 5.81543 5.86189 5.93024 5.95355 6.07440 6.11762 6.24757 6.55502 6.69062 7.14580 7.54716 7.58684 7.61130 7.80860 8.05710 8.30339 8.60345 9.17313 9.53452 10.04885 10.75102 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009514 B = 0.002237 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.436004 B =12512.317131 C =15044.149785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.086 0.914 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.707 5.707 19 C 0.521 3.479 20 O -0.549 6.549 21 C -0.132 4.132 22 C -0.036 4.036 23 C 0.323 3.677 24 N -0.517 5.517 25 C 0.148 3.852 26 C -0.237 4.237 27 C 0.151 3.849 28 N -0.512 5.512 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.351 0.649 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.406 0.594 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.168 0.832 45 H 0.147 0.853 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 1.281 19.358 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.104 0.896 4 C -0.082 4.082 5 N -0.300 5.300 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.358 5.358 19 C 0.308 3.692 20 O -0.427 6.427 21 C -0.173 4.173 22 C -0.075 4.075 23 C 0.056 3.944 24 N -0.231 5.231 25 C -0.018 4.018 26 C -0.259 4.259 27 C -0.015 4.015 28 N -0.226 5.226 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.171 0.829 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.241 0.759 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.185 0.815 45 H 0.165 0.835 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -14.664 2.252 19.443 24.457 hybrid contribution 1.082 -0.812 -0.419 1.416 sum -13.582 1.441 19.024 23.419 Atomic orbital electron populations 1.22136 0.95038 1.02180 1.02591 1.20932 0.93545 0.97512 0.84055 0.89574 1.22316 0.89518 1.00677 0.95730 1.60058 1.03052 1.26918 1.39933 1.21677 0.95304 0.99838 0.91393 1.19812 0.88020 0.84582 0.85036 1.90537 1.71094 1.51750 1.33172 1.41871 1.07422 1.51000 1.19819 1.19750 0.81502 1.34987 1.06512 0.87881 1.25264 1.00709 0.96800 0.95243 1.69620 1.36602 1.38669 1.09465 0.85802 0.82234 0.77906 0.78430 1.19196 1.20745 1.20769 1.45819 1.66567 1.14539 1.08877 1.20381 0.77127 0.87149 0.84574 1.90686 1.50748 1.15969 1.85321 1.21529 1.04066 0.99279 0.92439 1.20125 1.03430 0.96869 0.87076 1.23281 0.85090 0.91204 0.94827 1.68299 1.40140 1.09794 1.04879 1.23262 0.94546 0.91554 0.92479 1.22933 0.96001 1.03844 1.03104 1.23325 1.01150 0.88914 0.88131 1.68341 1.16224 1.18189 1.19798 0.91859 0.91682 0.92359 0.90491 0.93932 0.82929 0.89622 0.93842 0.77490 0.91937 0.75923 0.88788 0.88084 0.88177 0.88443 0.81516 0.83503 0.81359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 2 C 0.14 1.61 2.81 -67.93 -0.19 1.41 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 4 C 0.05 0.53 5.24 -3.82 -0.02 0.51 16 5 N -0.67 -10.15 5.85 -115.05 -0.67 -10.82 16 6 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 7 C 0.44 10.25 7.82 -10.99 -0.09 10.17 16 8 O -0.58 -15.71 15.78 5.55 0.09 -15.63 16 9 N -0.56 -14.20 5.29 -10.97 -0.06 -14.26 16 10 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 11 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 13 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 14 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 N -0.71 -8.02 4.80 -53.80 -0.26 -8.28 16 19 C 0.52 6.61 7.79 -10.98 -0.09 6.52 16 20 O -0.55 -8.65 15.64 5.56 0.09 -8.57 16 21 C -0.13 -1.40 5.68 -27.89 -0.16 -1.56 16 22 C -0.04 -0.40 4.94 -27.89 -0.14 -0.54 16 23 C 0.32 3.67 6.90 -157.20 -1.08 2.59 16 24 N -0.52 -5.43 10.33 -10.73 -0.11 -5.54 16 25 C 0.15 1.10 11.31 -17.20 -0.19 0.91 16 26 C -0.24 -1.50 10.17 -39.31 -0.40 -1.90 16 27 C 0.15 1.25 11.31 -17.20 -0.19 1.05 16 28 N -0.51 -5.88 10.33 -10.73 -0.11 -5.99 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.35 5.88 8.43 -39.29 -0.33 5.55 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.41 4.19 8.60 -40.82 -0.35 3.84 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 43 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 44 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.15 0.45 8.06 -52.48 -0.42 0.03 16 46 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -35.02 398.38 -8.63 -43.65 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -6.82 Total: 16.25 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -2.47 Total: 10.89 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: -0.49 Total: -68.64 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.17 Total: -24.19 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.02 -8.63 -43.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483179513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.863 kcal (2) G-P(sol) polarization free energy of solvation -35.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds