Wall clock time and date at job start Tue Mar 31 2020 18:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 N 1.46903 * 109.46674 * 184.99895 * 4 2 1 6 6 C 1.46904 * 110.99708 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47015 * 180.02562 * 6 5 4 8 8 O 1.21293 * 120.00256 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00285 * 180.02562 * 7 6 5 10 10 C 1.37091 * 120.00423 * 179.97438 * 9 7 6 11 11 H 1.08005 * 119.99559 * 359.97438 * 10 9 7 12 12 C 1.38946 * 120.00370 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99739 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00230 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47092 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46962 * 120.00186 * 14 12 10 17 17 H 1.48499 * 109.46822 * 240.00140 * 14 12 10 18 18 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 19 19 C 1.34784 * 119.99635 * 274.99773 * 18 2 1 20 20 O 1.21279 * 119.99925 * 359.97438 * 19 18 2 21 21 C 1.50700 * 119.99961 * 180.02562 * 19 18 2 22 22 C 1.52992 * 109.47257 * 180.02562 * 21 19 18 23 23 C 1.50700 * 109.47257 * 179.97438 * 22 21 19 24 24 N 1.31796 * 119.12247 * 269.72863 * 23 22 21 25 25 C 1.32329 * 120.82155 * 179.76224 * 24 23 22 26 26 C 1.38603 * 119.10076 * 0.50118 * 25 24 23 27 27 C 1.38599 * 118.39900 * 359.75239 * 26 25 24 28 28 N 1.31788 * 119.12399 * 90.00188 * 23 22 21 29 29 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 30 30 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 31 31 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47346 * 305.00057 * 4 2 1 33 33 H 1.09001 * 109.46950 * 65.00327 * 4 2 1 34 34 H 1.00898 * 111.00310 * 303.95288 * 5 4 2 35 35 H 1.09000 * 109.47481 * 300.00500 * 6 5 4 36 36 H 1.09002 * 109.46797 * 60.00200 * 6 5 4 37 37 H 0.96997 * 119.99524 * 359.97438 * 9 7 6 38 38 H 0.97006 * 120.00205 * 180.02562 * 13 12 10 39 39 H 0.96995 * 120.00292 * 95.27206 * 18 2 1 40 40 H 1.09004 * 109.46932 * 300.00223 * 21 19 18 41 41 H 1.08997 * 109.47392 * 59.99562 * 21 19 18 42 42 H 1.09004 * 109.47330 * 299.99977 * 22 21 19 43 43 H 1.09005 * 109.47124 * 59.99773 * 22 21 19 44 44 H 1.08001 * 120.45406 * 180.23819 * 25 24 23 45 45 H 1.08005 * 120.79996 * 179.77616 * 26 25 24 46 46 H 1.07999 * 120.44259 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5040 -0.8267 -1.1905 6 6 4.0302 -1.5159 -2.3763 7 6 5.5315 -1.6055 -2.2803 8 8 6.1066 -1.1405 -1.3190 9 7 6.2353 -2.2014 -3.2632 10 6 7.6010 -2.2824 -3.1762 11 1 8.1130 -1.8683 -2.3201 12 6 8.3265 -2.8972 -4.1892 13 7 7.7034 -3.4015 -5.2305 14 14 10.1874 -3.0083 -4.0703 15 1 10.6418 -2.3698 -2.8088 16 1 10.5998 -4.4348 -4.0802 17 1 10.8000 -2.3078 -5.2276 18 7 2.0184 -0.6907 1.1961 19 6 2.1471 -0.0183 2.3571 20 8 1.8591 1.1585 2.4114 21 6 2.6500 -0.7286 3.5874 22 6 2.7008 0.2542 4.7588 23 6 3.2030 -0.4562 5.9892 24 7 2.3350 -1.0325 6.7964 25 6 2.7394 -1.6694 7.8836 26 6 4.0941 -1.7160 8.1729 27 6 4.9757 -1.0939 7.3031 28 7 4.4981 -0.4801 6.2324 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1370 34 1 3.9280 0.0825 -1.0825 35 1 3.6093 -2.5200 -2.4296 36 1 3.7556 -0.9588 -3.2720 37 1 5.7754 -2.5729 -4.0322 38 1 8.2098 -3.8311 -5.9377 39 1 2.2528 -1.6308 1.1515 40 1 1.9778 -1.5510 3.8324 41 1 3.6492 -1.1205 3.3978 42 1 3.3727 1.0769 4.5140 43 1 1.7012 0.6457 4.9482 44 1 2.0232 -2.1429 8.5388 45 1 4.4540 -2.2252 9.0548 46 1 6.0381 -1.1102 7.4963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483179513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:39 Heat of formation + Delta-G solvation = -60.625476 kcal Electronic energy + Delta-G solvation = -27403.275099 eV Core-core repulsion = 23326.485198 eV Total energy + Delta-G solvation = -4076.789901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.00309 -40.82193 -40.11392 -37.85401 -36.03672 -35.26657 -35.05410 -34.67964 -33.25836 -32.46742 -31.26898 -28.94740 -26.90371 -26.59416 -25.46898 -24.60814 -23.40676 -22.06668 -21.27596 -21.02632 -19.90213 -18.54308 -18.47088 -18.01261 -17.46669 -17.34266 -16.60029 -16.50129 -16.35866 -16.08755 -15.98007 -15.81848 -15.32814 -15.16800 -14.80289 -14.68980 -14.51438 -14.19678 -14.07711 -13.81016 -13.53454 -13.26783 -13.13772 -13.06897 -12.97049 -12.78656 -12.66529 -12.40466 -12.18333 -12.12249 -11.85084 -11.82753 -11.78398 -11.51355 -10.90295 -10.42805 -10.34761 -10.21103 -10.01012 -9.96377 -9.33844 -8.47018 -5.95332 -0.08806 0.16687 1.36128 1.41519 1.55564 1.70217 2.06329 2.23348 2.29158 2.79046 2.89500 2.98565 3.20550 3.25462 3.53048 3.77269 3.77973 3.86512 4.08211 4.10379 4.20537 4.23596 4.24432 4.34520 4.40808 4.50297 4.54297 4.60637 4.62714 4.67159 4.76576 4.78290 4.83163 5.01277 5.01855 5.08918 5.30528 5.41122 5.47192 5.62218 5.87956 6.07650 6.09869 6.32434 6.60599 6.64986 7.12824 7.13290 7.33126 7.57156 8.12965 8.70522 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009514 B = 0.002237 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.436004 B =12512.317131 C =15044.149785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.145 3.855 3 H 0.062 0.938 4 C 0.054 3.946 5 N -0.679 5.679 6 C 0.066 3.934 7 C 0.436 3.564 8 O -0.624 6.624 9 N -0.574 5.574 10 C -0.332 4.332 11 H 0.076 0.924 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.991 3.009 15 H -0.275 1.275 16 H -0.270 1.270 17 H -0.271 1.271 18 N -0.701 5.701 19 C 0.518 3.482 20 O -0.585 6.585 21 C -0.120 4.120 22 C -0.029 4.029 23 C 0.304 3.696 24 N -0.537 5.537 25 C 0.137 3.863 26 C -0.218 4.218 27 C 0.132 3.868 28 N -0.546 5.546 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.339 0.661 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.412 0.588 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.202 0.798 45 H 0.187 0.813 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.364 -0.425 19.816 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.039 3.961 3 H 0.080 0.920 4 C -0.075 4.075 5 N -0.311 5.311 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.211 5.211 10 C -0.461 4.461 11 H 0.094 0.906 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.815 3.185 15 H -0.199 1.199 16 H -0.195 1.195 17 H -0.196 1.196 18 N -0.352 5.352 19 C 0.305 3.695 20 O -0.466 6.466 21 C -0.161 4.161 22 C -0.069 4.069 23 C 0.037 3.963 24 N -0.252 5.252 25 C -0.028 4.028 26 C -0.239 4.239 27 C -0.032 4.032 28 N -0.261 5.261 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.157 0.843 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.249 0.751 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.219 0.781 45 H 0.204 0.796 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -15.458 0.507 19.878 25.186 hybrid contribution 1.299 -0.294 -0.468 1.412 sum -14.159 0.213 19.409 24.026 Atomic orbital electron populations 1.22048 0.93148 1.03218 1.02585 1.20964 0.94895 0.96257 0.83951 0.91952 1.22381 0.86763 1.02132 0.96184 1.60064 1.05412 1.26239 1.39369 1.21541 0.90218 1.01839 0.92996 1.20969 0.90732 0.82391 0.83507 1.90509 1.72866 1.53007 1.34666 1.41935 1.06813 1.51783 1.20603 1.19665 0.83139 1.36760 1.06582 0.90556 1.26014 1.04814 0.95885 0.94584 1.69672 1.38143 1.38537 1.09724 0.84896 0.77048 0.78336 0.78218 1.19947 1.19502 1.19630 1.45838 1.65877 1.14777 1.08666 1.20726 0.76617 0.86775 0.85399 1.90665 1.52485 1.17528 1.85922 1.21440 1.03947 0.99350 0.91356 1.19965 1.02569 0.96533 0.87834 1.23098 0.85471 0.92485 0.95283 1.68279 1.40335 1.10576 1.05976 1.23946 0.96057 0.90860 0.91896 1.23333 0.95168 1.02082 1.03339 1.23880 1.02810 0.88780 0.87748 1.68287 1.16453 1.19667 1.21704 0.93455 0.90120 0.90725 0.88411 0.92163 0.84273 0.87176 0.91536 0.76920 0.91314 0.75140 0.86901 0.88627 0.90190 0.88953 0.78130 0.79577 0.79015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.48 71.98 0.68 -1.86 16 2 C 0.14 3.08 2.81 45.00 0.13 3.20 16 3 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 4 C 0.05 1.09 5.24 86.30 0.45 1.54 16 5 N -0.68 -19.88 5.85 -517.92 -3.03 -22.91 16 6 C 0.07 2.12 6.17 85.56 0.53 2.65 16 7 C 0.44 20.42 7.82 87.66 0.69 21.11 16 8 O -0.62 -34.60 15.78 -3.07 -0.05 -34.65 16 9 N -0.57 -29.15 5.29 -306.99 -1.62 -30.77 16 10 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 11 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 12 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 13 N -0.92 -49.35 13.05 21.66 0.28 -49.06 16 14 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 N -0.70 -15.70 4.80 -442.53 -2.13 -17.83 16 19 C 0.52 13.57 7.79 87.66 0.68 14.26 16 20 O -0.59 -19.42 15.64 -3.03 -0.05 -19.47 16 21 C -0.12 -2.65 5.68 29.85 0.17 -2.48 16 22 C -0.03 -0.71 4.94 29.85 0.15 -0.56 16 23 C 0.30 7.14 6.90 138.75 0.96 8.10 16 24 N -0.54 -11.07 10.33 -187.85 -1.94 -13.02 16 25 C 0.14 1.79 11.31 84.71 0.96 2.74 16 26 C -0.22 -2.23 10.17 22.44 0.23 -2.01 16 27 C 0.13 2.05 11.31 84.70 0.96 3.01 16 28 N -0.55 -12.86 10.33 -187.85 -1.94 -14.80 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.34 11.39 8.43 -89.70 -0.76 10.63 16 35 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 38 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 39 H 0.41 8.12 8.60 -92.71 -0.80 7.33 16 40 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.08 2.18 8.10 -2.38 -0.02 2.16 16 43 H 0.09 2.23 8.10 -2.38 -0.02 2.21 16 44 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 45 H 0.19 0.36 8.06 -2.91 -0.02 0.34 16 46 H 0.19 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -78.81 398.38 -1.85 -80.65 By element: Atomic # 1 Polarization: 46.63 SS G_CDS: -1.26 Total: 45.37 kcal Atomic # 6 Polarization: 23.57 SS G_CDS: 7.86 Total: 31.42 kcal Atomic # 7 Polarization: -138.00 SS G_CDS: -10.38 Total: -148.38 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -0.10 Total: -54.12 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -78.81 -1.85 -80.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483179513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.028 kcal (2) G-P(sol) polarization free energy of solvation -78.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds