Wall clock time and date at job start Tue Mar 31 2020 18:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46727 * 2 1 4 4 C 1.50700 * 109.47022 * 240.00241 * 2 1 3 5 5 O 1.21284 * 119.99913 * 239.99599 * 4 2 1 6 6 N 1.34777 * 120.00153 * 59.99968 * 4 2 1 7 7 C 1.46498 * 120.00101 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47326 * 174.95542 * 7 6 4 9 9 N 1.46902 * 115.54672 * 272.74714 * 8 7 6 10 10 C 1.46907 * 111.00101 * 294.30950 * 9 8 7 11 11 C 1.50691 * 109.47330 * 177.90432 * 10 9 8 12 12 O 1.21296 * 120.00403 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00195 * 179.97438 * 11 10 9 14 14 C 1.37094 * 120.00246 * 179.97438 * 13 11 10 15 15 H 1.08003 * 120.00141 * 359.97438 * 14 13 11 16 16 C 1.38953 * 120.00055 * 180.02562 * 14 13 11 17 17 N 1.31410 * 119.99855 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00070 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47007 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46966 * 120.00018 * 18 16 14 21 21 H 1.48497 * 109.47187 * 239.99779 * 18 16 14 22 22 C 1.52995 * 117.50309 * 127.07469 * 8 7 6 23 23 C 1.52997 * 117.50200 * 58.41205 * 8 7 6 24 24 N 1.46497 * 109.47393 * 119.99989 * 2 1 3 25 25 C 1.34950 * 126.03396 * 34.72071 * 24 2 1 26 26 C 1.35318 * 107.74254 * 179.84156 * 25 24 2 27 27 C 1.39864 * 107.91915 * 0.41609 * 26 25 24 28 28 N 1.30829 * 108.20575 * 359.74406 * 27 26 25 29 29 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47680 * 299.99511 * 1 2 3 31 31 H 1.09000 * 109.47713 * 59.99771 * 1 2 3 32 32 H 0.97000 * 120.00017 * 0.02562 * 6 4 2 33 33 H 1.09000 * 109.47119 * 294.95202 * 7 6 4 34 34 H 1.09003 * 109.47421 * 54.95303 * 7 6 4 35 35 H 1.00897 * 111.00076 * 170.35864 * 9 8 7 36 36 H 1.09004 * 109.46379 * 297.90431 * 10 9 8 37 37 H 1.09001 * 109.46901 * 57.89530 * 10 9 8 38 38 H 0.97007 * 119.99560 * 0.02562 * 13 11 10 39 39 H 0.97000 * 119.99781 * 180.02562 * 17 16 14 40 40 H 1.08998 * 117.49575 * 359.97438 * 22 8 7 41 41 H 1.08997 * 117.49803 * 145.01861 * 22 8 7 42 42 H 1.08997 * 117.50089 * 214.98398 * 23 8 7 43 43 H 1.09000 * 117.49766 * 359.97438 * 23 8 7 44 44 H 1.08005 * 126.12837 * 359.97438 * 25 24 2 45 45 H 1.08005 * 126.03550 * 180.16162 * 26 25 24 46 46 H 1.08009 * 125.89376 * 179.71780 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1954 -0.9401 -3.6508 8 6 1.5844 -0.2959 -4.8968 9 7 0.2785 -0.8274 -5.3091 10 6 0.3922 -2.2267 -5.7416 11 6 -0.9720 -2.7520 -6.1072 12 8 -1.9438 -2.0319 -6.0159 13 7 -1.1125 -4.0222 -6.5355 14 6 -2.3538 -4.5003 -6.8676 15 1 -3.2191 -3.8592 -6.7856 16 6 -2.4987 -5.8099 -7.3087 17 7 -1.4460 -6.5903 -7.4071 18 14 -4.1899 -6.4612 -7.7619 19 1 -5.2013 -5.3920 -7.5642 20 1 -4.1912 -6.8877 -9.1843 21 1 -4.5215 -7.6217 -6.8968 22 6 2.5428 0.1574 -5.9999 23 6 1.8424 1.1956 -5.1197 24 7 2.0183 -0.6906 1.1961 25 6 1.4373 -1.7526 1.7925 26 6 2.1967 -2.0928 2.8596 27 6 3.2735 -1.2025 2.9229 28 7 3.1676 -0.3615 1.9263 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.1493 0.5390 -2.5436 33 1 3.2817 -0.8620 -3.6970 34 1 1.9082 -1.9907 -3.6070 35 1 -0.1316 -0.2573 -6.0335 36 1 1.0491 -2.2864 -6.6095 37 1 0.8068 -2.8252 -4.9304 38 1 -0.3355 -4.5983 -6.6082 39 1 -1.5471 -7.5045 -7.7154 40 1 3.6087 -0.0029 -5.8378 41 1 2.2041 0.0616 -7.0315 42 1 1.0433 1.7824 -5.5726 43 1 2.4471 1.7181 -4.3784 44 1 0.5301 -2.2444 1.4738 45 1 2.0029 -2.9055 3.5441 46 1 4.0569 -1.2080 3.6664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483720462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:28 Heat of formation + Delta-G solvation = 43.613193 kcal Electronic energy + Delta-G solvation = -28371.968779 eV Core-core repulsion = 24299.699006 eV Total energy + Delta-G solvation = -4072.269773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45750 -39.99571 -38.85718 -37.82800 -34.87444 -34.36389 -34.00968 -32.67794 -31.22709 -30.25881 -29.78272 -27.47038 -26.60140 -24.87460 -24.13029 -22.73980 -21.62357 -21.17936 -20.22988 -19.70556 -19.29326 -17.95951 -17.84106 -17.32638 -16.59560 -16.05067 -15.68393 -15.50626 -15.21337 -14.66268 -14.56943 -14.43521 -14.11916 -14.03692 -13.83353 -13.72714 -13.30979 -13.15249 -12.90950 -12.75971 -12.57066 -12.53708 -12.27643 -11.94597 -11.78859 -11.69810 -11.52611 -11.15177 -10.93137 -10.83425 -10.46806 -10.37450 -10.26496 -10.19469 -9.56188 -9.50238 -9.26226 -8.71077 -8.50581 -8.15361 -8.00637 -6.45428 -3.86587 1.69482 2.15036 2.33764 2.77199 2.91119 3.13478 3.24400 3.31059 3.52626 3.84311 3.98616 4.13024 4.20605 4.33325 4.38689 4.45166 4.56026 4.69893 4.75325 4.82558 5.05873 5.08782 5.19066 5.21100 5.37305 5.40989 5.44054 5.46487 5.55825 5.62038 5.67997 5.69498 5.78697 5.86952 5.90802 5.91493 6.16592 6.21086 6.51256 6.79534 7.03708 7.24266 7.46402 7.51678 7.57282 7.94090 8.01703 8.56222 9.13598 9.49529 10.00214 10.72224 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.002514 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.170236 B =11133.719929 C =12715.339855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.127 0.873 4 C 0.500 3.500 5 O -0.522 6.522 6 N -0.711 5.711 7 C 0.167 3.833 8 C 0.037 3.963 9 N -0.626 5.626 10 C 0.049 3.951 11 C 0.440 3.560 12 O -0.585 6.585 13 N -0.562 5.562 14 C -0.300 4.300 15 H 0.104 0.896 16 C 0.022 3.978 17 N -0.900 5.900 18 Si 0.929 3.071 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.205 4.205 23 C -0.167 4.167 24 N -0.355 5.355 25 C 0.071 3.929 26 C -0.276 4.276 27 C 0.046 3.954 28 N -0.295 5.295 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.405 0.595 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.354 0.646 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.171 0.829 45 H 0.147 0.853 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.028 14.430 13.375 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.144 0.856 4 C 0.283 3.717 5 O -0.397 6.397 6 N -0.364 5.364 7 C 0.043 3.957 8 C -0.056 4.056 9 N -0.257 5.257 10 C -0.083 4.083 11 C 0.226 3.774 12 O -0.469 6.469 13 N -0.198 5.198 14 C -0.429 4.429 15 H 0.121 0.879 16 C -0.179 4.179 17 N -0.541 5.541 18 Si 0.757 3.243 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.246 4.246 23 C -0.205 4.205 24 N -0.137 5.137 25 C -0.075 4.075 26 C -0.305 4.305 27 C -0.140 4.140 28 N -0.115 5.115 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.240 0.760 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.175 0.825 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.226 0.774 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.188 0.812 45 H 0.165 0.835 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 9.132 14.870 13.373 21.985 hybrid contribution -0.461 -1.137 -0.959 1.558 sum 8.671 13.733 12.414 20.442 Atomic orbital electron populations 1.22185 0.90173 1.04847 1.04873 1.21068 0.96335 0.97483 0.81244 0.85570 1.20693 0.81096 0.85235 0.84689 1.90784 1.36971 1.25576 1.86411 1.45815 1.53558 1.32195 1.04820 1.20751 0.97118 0.97076 0.80724 1.21852 0.91234 0.96357 0.96158 1.59860 1.17594 1.02569 1.45638 1.21693 0.96983 0.89883 0.99706 1.19731 0.89742 0.83542 0.84415 1.90523 1.40223 1.57630 1.58528 1.41867 1.10271 1.10225 1.57452 1.19742 0.86411 0.96096 1.40688 0.87853 1.25280 0.99231 0.96024 0.97403 1.69620 1.29347 1.08122 1.47018 0.85801 0.81714 0.78825 0.78008 1.19207 1.20730 1.20691 1.23663 0.99272 1.04605 0.97017 1.23164 1.03240 0.90961 1.03122 1.48170 1.19564 1.24751 1.21248 1.22473 0.99821 0.90565 0.94637 1.21470 0.99195 1.06283 1.03557 1.23851 0.99114 0.93989 0.97057 1.77313 1.02251 1.24576 1.07395 0.90557 0.90122 0.88890 0.76030 0.90973 0.89981 0.82527 0.93423 0.89484 0.77428 0.91847 0.88377 0.88317 0.88037 0.88129 0.81173 0.83514 0.80090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 8.72 37.16 0.32 -0.79 16 2 C 0.15 1.37 3.73 -69.09 -0.26 1.11 16 3 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.50 6.05 7.22 -10.99 -0.08 5.97 16 5 O -0.52 -8.80 16.42 5.55 0.09 -8.71 16 6 N -0.71 -7.16 5.36 -60.29 -0.32 -7.48 16 7 C 0.17 1.92 5.75 -4.04 -0.02 1.90 16 8 C 0.04 0.41 1.90 -131.60 -0.25 0.16 16 9 N -0.63 -9.07 6.26 -101.22 -0.63 -9.71 16 10 C 0.05 0.84 6.03 -4.98 -0.03 0.81 16 11 C 0.44 10.11 7.82 -10.99 -0.09 10.02 16 12 O -0.58 -15.37 15.83 5.54 0.09 -15.28 16 13 N -0.56 -14.06 5.29 -10.97 -0.06 -14.12 16 14 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 15 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 16 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 17 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 18 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 22 C -0.21 -1.92 10.07 -26.70 -0.27 -2.19 16 23 C -0.17 -1.39 9.56 -26.70 -0.26 -1.65 16 24 N -0.36 -4.22 3.02 -55.99 -0.17 -4.39 16 25 C 0.07 0.78 10.58 -17.22 -0.18 0.59 16 26 C -0.28 -2.89 10.80 -40.01 -0.43 -3.32 16 27 C 0.05 0.51 12.02 -17.37 -0.21 0.30 16 28 N -0.29 -3.88 12.57 30.62 0.39 -3.50 16 29 H 0.08 0.59 7.15 -51.93 -0.37 0.22 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.51 7.57 -51.93 -0.39 0.12 16 32 H 0.40 3.10 7.59 -40.82 -0.31 2.79 16 33 H 0.07 0.80 7.89 -51.93 -0.41 0.39 16 34 H 0.08 1.15 6.46 -51.93 -0.34 0.81 16 35 H 0.35 5.27 8.38 -39.29 -0.33 4.94 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.43 6.55 -51.93 -0.34 1.09 16 38 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.10 0.84 8.04 -51.93 -0.42 0.42 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.17 1.48 7.26 -52.48 -0.38 1.10 16 45 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16 46 H 0.18 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 393.28 15.07 5.93 5.93 Total: -1.00 -35.82 393.28 -7.48 -43.30 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -6.50 Total: 16.80 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -1.99 Total: 4.99 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.07 Total: -62.87 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.18 Total: -23.99 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.82 -7.48 -43.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483720462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.916 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds