Wall clock time and date at job start Tue Mar 31 2020 18:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46727 * 2 1 4 4 C 1.50700 * 109.47022 * 240.00241 * 2 1 3 5 5 O 1.21284 * 119.99913 * 239.99599 * 4 2 1 6 6 N 1.34777 * 120.00153 * 59.99968 * 4 2 1 7 7 C 1.46498 * 120.00101 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47326 * 174.95542 * 7 6 4 9 9 N 1.46902 * 115.54672 * 272.74714 * 8 7 6 10 10 C 1.46907 * 111.00101 * 294.30950 * 9 8 7 11 11 C 1.50691 * 109.47330 * 177.90432 * 10 9 8 12 12 O 1.21296 * 120.00403 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00195 * 179.97438 * 11 10 9 14 14 C 1.37094 * 120.00246 * 179.97438 * 13 11 10 15 15 H 1.08003 * 120.00141 * 359.97438 * 14 13 11 16 16 C 1.38953 * 120.00055 * 180.02562 * 14 13 11 17 17 N 1.31410 * 119.99855 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00070 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47007 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46966 * 120.00018 * 18 16 14 21 21 H 1.48497 * 109.47187 * 239.99779 * 18 16 14 22 22 C 1.52995 * 117.50309 * 127.07469 * 8 7 6 23 23 C 1.52997 * 117.50200 * 58.41205 * 8 7 6 24 24 N 1.46497 * 109.47393 * 119.99989 * 2 1 3 25 25 C 1.34950 * 126.03396 * 34.72071 * 24 2 1 26 26 C 1.35318 * 107.74254 * 179.84156 * 25 24 2 27 27 C 1.39864 * 107.91915 * 0.41609 * 26 25 24 28 28 N 1.30829 * 108.20575 * 359.74406 * 27 26 25 29 29 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47680 * 299.99511 * 1 2 3 31 31 H 1.09000 * 109.47713 * 59.99771 * 1 2 3 32 32 H 0.97000 * 120.00017 * 0.02562 * 6 4 2 33 33 H 1.09000 * 109.47119 * 294.95202 * 7 6 4 34 34 H 1.09003 * 109.47421 * 54.95303 * 7 6 4 35 35 H 1.00897 * 111.00076 * 170.35864 * 9 8 7 36 36 H 1.09004 * 109.46379 * 297.90431 * 10 9 8 37 37 H 1.09001 * 109.46901 * 57.89530 * 10 9 8 38 38 H 0.97007 * 119.99560 * 0.02562 * 13 11 10 39 39 H 0.97000 * 119.99781 * 180.02562 * 17 16 14 40 40 H 1.08998 * 117.49575 * 359.97438 * 22 8 7 41 41 H 1.08997 * 117.49803 * 145.01861 * 22 8 7 42 42 H 1.08997 * 117.50089 * 214.98398 * 23 8 7 43 43 H 1.09000 * 117.49766 * 359.97438 * 23 8 7 44 44 H 1.08005 * 126.12837 * 359.97438 * 25 24 2 45 45 H 1.08005 * 126.03550 * 180.16162 * 26 25 24 46 46 H 1.08009 * 125.89376 * 179.71780 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1954 -0.9401 -3.6508 8 6 1.5844 -0.2959 -4.8968 9 7 0.2785 -0.8274 -5.3091 10 6 0.3922 -2.2267 -5.7416 11 6 -0.9720 -2.7520 -6.1072 12 8 -1.9438 -2.0319 -6.0159 13 7 -1.1125 -4.0222 -6.5355 14 6 -2.3538 -4.5003 -6.8676 15 1 -3.2191 -3.8592 -6.7856 16 6 -2.4987 -5.8099 -7.3087 17 7 -1.4460 -6.5903 -7.4071 18 14 -4.1899 -6.4612 -7.7619 19 1 -5.2013 -5.3920 -7.5642 20 1 -4.1912 -6.8877 -9.1843 21 1 -4.5215 -7.6217 -6.8968 22 6 2.5428 0.1574 -5.9999 23 6 1.8424 1.1956 -5.1197 24 7 2.0183 -0.6906 1.1961 25 6 1.4373 -1.7526 1.7925 26 6 2.1967 -2.0928 2.8596 27 6 3.2735 -1.2025 2.9229 28 7 3.1676 -0.3615 1.9263 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.1493 0.5390 -2.5436 33 1 3.2817 -0.8620 -3.6970 34 1 1.9082 -1.9907 -3.6070 35 1 -0.1316 -0.2573 -6.0335 36 1 1.0491 -2.2864 -6.6095 37 1 0.8068 -2.8252 -4.9304 38 1 -0.3355 -4.5983 -6.6082 39 1 -1.5471 -7.5045 -7.7154 40 1 3.6087 -0.0029 -5.8378 41 1 2.2041 0.0616 -7.0315 42 1 1.0433 1.7824 -5.5726 43 1 2.4471 1.7181 -4.3784 44 1 0.5301 -2.2444 1.4738 45 1 2.0029 -2.9055 3.5441 46 1 4.0569 -1.2080 3.6664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483720462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:27 Heat of formation + Delta-G solvation = 15.287559 kcal Electronic energy + Delta-G solvation = -28373.197071 eV Core-core repulsion = 24299.699006 eV Total energy + Delta-G solvation = -4073.498065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.27374 -40.95284 -40.24159 -39.22630 -36.04478 -35.72930 -35.20058 -33.93249 -33.21275 -31.07749 -30.54066 -28.41292 -28.14929 -25.90287 -25.60746 -23.50135 -22.47939 -21.97854 -21.21420 -21.03638 -20.56757 -19.92884 -18.74592 -18.16317 -17.91819 -17.11522 -16.93645 -16.61611 -16.43353 -16.15383 -15.80941 -15.67256 -15.32650 -15.27824 -14.74760 -14.64267 -14.45475 -14.19707 -13.97132 -13.69830 -13.60964 -13.52723 -13.41380 -13.27524 -12.99086 -12.87616 -12.64328 -12.42790 -12.41893 -12.12353 -11.90282 -11.67301 -11.52971 -11.33058 -11.14155 -10.38275 -10.33450 -10.20441 -10.03956 -9.53287 -9.29105 -8.48609 -5.97673 0.86277 1.35357 1.36829 1.40905 1.45250 1.55109 1.97340 2.01737 2.08342 2.26235 2.60541 3.00091 3.18654 3.40439 3.41741 3.57370 3.60056 3.75454 3.79338 3.97173 3.99584 4.13864 4.24205 4.41771 4.47871 4.51490 4.56477 4.59353 4.65298 4.70541 4.74972 4.76720 4.87041 4.98281 5.07200 5.15689 5.19592 5.28326 5.39285 5.74727 5.82342 6.02388 6.03843 6.31886 6.42998 6.56669 6.75176 7.07147 7.10118 7.53219 8.07450 8.69074 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.002514 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.170236 B =11133.719929 C =12715.339855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.146 3.854 3 H 0.147 0.853 4 C 0.498 3.502 5 O -0.576 6.576 6 N -0.696 5.696 7 C 0.170 3.830 8 C 0.022 3.978 9 N -0.634 5.634 10 C 0.066 3.934 11 C 0.440 3.560 12 O -0.619 6.619 13 N -0.574 5.574 14 C -0.332 4.332 15 H 0.081 0.919 16 C -0.015 4.015 17 N -0.922 5.922 18 Si 0.993 3.007 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.272 1.272 22 C -0.200 4.200 23 C -0.142 4.142 24 N -0.365 5.365 25 C 0.056 3.944 26 C -0.284 4.284 27 C 0.040 3.960 28 N -0.332 5.332 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.418 0.582 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.352 0.648 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.395 0.605 39 H 0.277 0.723 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.122 0.878 44 H 0.186 0.814 45 H 0.167 0.833 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.141 15.641 13.606 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.165 0.835 4 C 0.283 3.717 5 O -0.455 6.455 6 N -0.349 5.349 7 C 0.046 3.954 8 C -0.071 4.071 9 N -0.265 5.265 10 C -0.066 4.066 11 C 0.227 3.773 12 O -0.506 6.506 13 N -0.211 5.211 14 C -0.461 4.461 15 H 0.099 0.901 16 C -0.214 4.214 17 N -0.563 5.563 18 Si 0.817 3.183 19 H -0.196 1.196 20 H -0.196 1.196 21 H -0.197 1.197 22 C -0.240 4.240 23 C -0.179 4.179 24 N -0.147 5.147 25 C -0.090 4.090 26 C -0.313 4.313 27 C -0.145 4.145 28 N -0.153 5.153 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.256 0.744 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.173 0.827 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.229 0.771 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.114 0.886 42 H 0.127 0.873 43 H 0.140 0.860 44 H 0.203 0.797 45 H 0.185 0.815 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 9.253 16.123 13.593 23.029 hybrid contribution -0.452 -1.466 -1.016 1.840 sum 8.801 14.657 12.577 21.224 Atomic orbital electron populations 1.22200 0.88164 1.04588 1.06433 1.21286 0.97701 0.97706 0.79303 0.83506 1.21231 0.80140 0.84554 0.85794 1.90756 1.39547 1.28047 1.87199 1.45728 1.52965 1.32150 1.04055 1.20633 0.97493 0.95748 0.81510 1.21746 0.90269 0.98518 0.96537 1.59797 1.20180 1.01157 1.45387 1.21464 0.93006 0.91522 1.00585 1.20758 0.91710 0.82501 0.82308 1.90488 1.42289 1.58330 1.59462 1.41959 1.09656 1.11174 1.58315 1.19705 0.86927 0.96742 1.42747 0.90109 1.26075 1.02912 0.95705 0.96726 1.69685 1.30958 1.08512 1.47101 0.84863 0.77179 0.78048 0.78210 1.19560 1.19564 1.19739 1.23703 0.99548 1.04406 0.96379 1.23287 1.02849 0.89253 1.02557 1.48393 1.19408 1.25195 1.21703 1.22910 1.00545 0.90599 0.94897 1.21840 0.98938 1.06707 1.03820 1.24407 0.99747 0.93407 0.96982 1.77236 1.03404 1.26075 1.08573 0.91695 0.88619 0.87214 0.74386 0.90369 0.92868 0.82750 0.91530 0.88940 0.77142 0.91309 0.87220 0.88611 0.87343 0.86009 0.79654 0.81510 0.77443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 8.72 71.98 0.63 -1.25 16 2 C 0.15 2.58 3.73 44.24 0.17 2.75 16 3 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 4 C 0.50 11.83 7.22 87.66 0.63 12.46 16 5 O -0.58 -19.80 16.42 -3.04 -0.05 -19.85 16 6 N -0.70 -13.13 5.36 -463.05 -2.48 -15.61 16 7 C 0.17 3.76 5.75 86.38 0.50 4.26 16 8 C 0.02 0.44 1.90 3.53 0.01 0.44 16 9 N -0.63 -17.77 6.26 -474.14 -2.97 -20.73 16 10 C 0.07 2.22 6.03 85.55 0.52 2.74 16 11 C 0.44 20.50 7.82 87.65 0.69 21.19 16 12 O -0.62 -33.18 15.83 -3.08 -0.05 -33.23 16 13 N -0.57 -29.39 5.29 -306.99 -1.62 -31.01 16 14 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 15 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 16 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 17 N -0.92 -50.02 13.05 21.66 0.28 -49.73 16 18 Si 0.99 42.75 29.55 68.60 2.03 44.77 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 C -0.20 -3.24 10.07 30.62 0.31 -2.94 16 23 C -0.14 -1.91 9.56 30.62 0.29 -1.62 16 24 N -0.36 -8.48 3.02 -331.07 -1.00 -9.48 16 25 C 0.06 1.21 10.58 83.54 0.88 2.09 16 26 C -0.28 -5.73 10.80 21.99 0.24 -5.49 16 27 C 0.04 0.86 12.02 85.24 1.02 1.88 16 28 N -0.33 -8.62 12.57 -57.03 -0.72 -9.33 16 29 H 0.06 0.95 7.15 -2.39 -0.02 0.93 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 0.94 7.57 -2.39 -0.02 0.92 16 32 H 0.42 5.46 7.59 -92.71 -0.70 4.76 16 33 H 0.08 1.65 7.89 -2.39 -0.02 1.63 16 34 H 0.05 1.50 6.46 -2.39 -0.02 1.49 16 35 H 0.35 10.11 8.38 -89.70 -0.75 9.36 16 36 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.09 3.04 6.55 -2.39 -0.02 3.02 16 38 H 0.39 19.45 7.90 -92.70 -0.73 18.72 16 39 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 40 H 0.11 1.56 8.04 -2.39 -0.02 1.54 16 41 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.19 3.16 7.26 -2.91 -0.02 3.14 16 45 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 46 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -79.47 393.28 -0.56 -80.03 By element: Atomic # 1 Polarization: 47.05 SS G_CDS: -1.15 Total: 45.90 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 7.16 Total: 18.28 kcal Atomic # 7 Polarization: -127.40 SS G_CDS: -8.51 Total: -135.91 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.10 Total: -53.07 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -79.47 -0.56 -80.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483720462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.319 kcal (2) G-P(sol) polarization free energy of solvation -79.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds