Wall clock time and date at job start Tue Mar 31 2020 18:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.46973 * 2 1 4 4 C 1.50703 * 109.47103 * 119.99648 * 2 1 3 5 5 O 1.21273 * 120.00038 * 120.00217 * 4 2 1 6 6 N 1.34781 * 119.99892 * 300.00257 * 4 2 1 7 7 C 1.46499 * 119.99777 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47094 * 175.58826 * 7 6 4 9 9 N 1.46892 * 115.55385 * 279.61957 * 8 7 6 10 10 C 1.46903 * 111.00000 * 294.62765 * 9 8 7 11 11 C 1.50701 * 109.47058 * 179.59603 * 10 9 8 12 12 O 1.21285 * 120.00020 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99593 * 179.97438 * 11 10 9 14 14 C 1.37093 * 119.99635 * 179.97438 * 13 11 10 15 15 H 1.08002 * 120.00209 * 0.02562 * 14 13 11 16 16 C 1.38947 * 119.99950 * 179.97438 * 14 13 11 17 17 N 1.31409 * 120.00141 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00283 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47017 * 60.00147 * 18 16 14 20 20 H 1.48498 * 109.47095 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46862 * 300.00400 * 18 16 14 22 22 C 1.52999 * 117.49555 * 133.94432 * 8 7 6 23 23 C 1.53007 * 117.49487 * 65.28634 * 8 7 6 24 24 N 1.46499 * 109.47594 * 240.00016 * 2 1 3 25 25 C 1.34953 * 126.03212 * 324.71394 * 24 2 1 26 26 C 1.35315 * 107.74120 * 179.83879 * 25 24 2 27 27 C 1.39863 * 107.92302 * 0.42647 * 26 25 24 28 28 N 1.30845 * 108.20327 * 359.73498 * 27 26 25 29 29 H 1.09000 * 109.47534 * 300.00195 * 1 2 3 30 30 H 1.09004 * 109.47278 * 60.00627 * 1 2 3 31 31 H 1.09007 * 109.46973 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99675 * 359.97438 * 6 4 2 33 33 H 1.08999 * 109.47205 * 295.59409 * 7 6 4 34 34 H 1.09001 * 109.47286 * 55.59285 * 7 6 4 35 35 H 1.00902 * 111.00130 * 170.67251 * 9 8 7 36 36 H 1.08999 * 109.47015 * 299.59429 * 10 9 8 37 37 H 1.09000 * 109.47213 * 59.59483 * 10 9 8 38 38 H 0.96998 * 120.00059 * 0.02562 * 13 11 10 39 39 H 0.96998 * 120.00092 * 179.97438 * 17 16 14 40 40 H 1.08996 * 117.50345 * 0.02562 * 22 8 7 41 41 H 1.09003 * 117.49747 * 145.02483 * 22 8 7 42 42 H 1.08998 * 117.49894 * 214.97642 * 23 8 7 43 43 H 1.09004 * 117.49599 * 359.97438 * 23 8 7 44 44 H 1.08001 * 126.12536 * 359.97438 * 25 24 2 45 45 H 1.08005 * 126.04084 * 180.15941 * 26 25 24 46 46 H 1.08002 * 125.90133 * 179.71275 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7295 -1.6963 1.1193 6 7 1.7066 -0.2498 2.4546 7 6 2.1945 -0.9407 3.6508 8 6 1.7772 -0.1581 4.8976 9 7 2.6161 1.0015 5.2281 10 6 3.9755 0.5809 5.5931 11 6 4.8076 1.7953 5.9153 12 8 4.3167 2.9023 5.8471 13 7 6.0973 1.6512 6.2792 14 6 6.8545 2.7561 6.5717 15 1 6.4173 3.7418 6.5110 16 6 8.1839 2.6076 6.9474 17 7 8.7157 1.4082 7.0217 18 14 9.2155 4.1129 7.3468 19 1 8.6015 4.8465 8.4827 20 1 10.5894 3.6876 7.7163 21 1 9.2755 5.0013 6.1583 22 6 1.1769 -0.9504 6.0607 23 6 0.2807 -0.0565 5.1998 24 7 2.0184 -0.6906 -1.1961 25 6 1.4432 -1.7593 -1.7863 26 6 2.1964 -2.0924 -2.8599 27 6 3.2739 -1.2029 -2.9226 28 7 3.1682 -0.3620 -1.9256 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.1492 0.5390 2.5435 33 1 1.7678 -1.9429 3.6910 34 1 3.2816 -1.0100 3.6124 35 1 2.1984 1.5522 5.9632 36 1 3.9321 -0.0716 6.4651 37 1 4.4256 0.0429 4.7588 38 1 6.4900 0.7660 6.3333 39 1 9.6439 1.3046 7.2836 40 1 1.0796 -2.0290 5.9380 41 1 1.4042 -0.6108 7.0713 42 1 -0.0812 0.8706 5.6443 43 1 -0.4064 -0.5468 4.5101 44 1 0.5419 -2.2577 -1.4613 45 1 2.0024 -2.9047 -3.5448 46 1 4.0579 -1.2091 -3.6653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483720463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:32 Heat of formation + Delta-G solvation = 43.862369 kcal Electronic energy + Delta-G solvation = -28339.460408 eV Core-core repulsion = 24267.201440 eV Total energy + Delta-G solvation = -4072.258968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.45688 -39.97900 -38.84851 -37.80770 -34.88975 -34.34875 -33.99903 -32.66766 -31.20568 -30.26377 -29.80898 -27.46780 -26.58526 -24.89761 -24.10844 -22.71367 -21.62859 -21.17953 -20.24706 -19.69407 -19.27303 -17.94157 -17.84811 -17.33876 -16.56780 -16.04508 -15.70797 -15.44362 -15.23481 -14.59734 -14.53642 -14.49587 -14.10978 -13.99250 -13.90188 -13.76407 -13.28772 -13.14723 -12.98608 -12.80720 -12.63329 -12.52271 -12.24556 -11.98812 -11.77851 -11.69847 -11.50439 -11.10443 -10.91555 -10.78551 -10.45842 -10.43737 -10.23329 -10.18604 -9.51880 -9.50094 -9.24434 -8.71639 -8.48224 -8.14576 -7.98285 -6.42739 -3.84008 1.69659 2.16809 2.34224 2.77966 2.91429 3.19397 3.25513 3.29459 3.54400 3.86472 3.99534 4.10599 4.22422 4.32007 4.38469 4.47885 4.57373 4.61921 4.75294 4.80123 4.98076 5.07426 5.13040 5.23563 5.35812 5.37148 5.42292 5.46400 5.47750 5.62844 5.65429 5.68161 5.79804 5.87191 5.88541 5.94544 6.17951 6.23170 6.52020 6.79468 7.05350 7.26472 7.48211 7.53759 7.59710 7.95390 8.03669 8.58674 9.15775 9.51807 10.02551 10.74787 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011158 B = 0.002531 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.828274 B =11062.274589 C =12800.161198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.143 3.857 3 H 0.131 0.869 4 C 0.500 3.500 5 O -0.524 6.524 6 N -0.710 5.710 7 C 0.168 3.832 8 C 0.037 3.963 9 N -0.626 5.626 10 C 0.050 3.950 11 C 0.440 3.560 12 O -0.585 6.585 13 N -0.561 5.561 14 C -0.301 4.301 15 H 0.103 0.897 16 C 0.023 3.977 17 N -0.900 5.900 18 Si 0.931 3.069 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.205 4.205 23 C -0.166 4.166 24 N -0.354 5.354 25 C 0.066 3.934 26 C -0.275 4.275 27 C 0.046 3.954 28 N -0.287 5.287 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.406 0.594 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.355 0.645 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.393 0.607 39 H 0.273 0.727 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.168 0.832 45 H 0.146 0.854 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.407 -8.857 -12.411 25.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.149 0.851 4 C 0.284 3.716 5 O -0.399 6.399 6 N -0.362 5.362 7 C 0.044 3.956 8 C -0.057 4.057 9 N -0.257 5.257 10 C -0.082 4.082 11 C 0.225 3.775 12 O -0.470 6.470 13 N -0.197 5.197 14 C -0.431 4.431 15 H 0.120 0.880 16 C -0.179 4.179 17 N -0.541 5.541 18 Si 0.758 3.242 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.246 4.246 23 C -0.204 4.204 24 N -0.137 5.137 25 C -0.080 4.080 26 C -0.305 4.305 27 C -0.141 4.141 28 N -0.108 5.108 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.241 0.759 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.175 0.825 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.226 0.774 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.186 0.814 45 H 0.164 0.836 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -19.348 -7.653 -12.418 24.231 hybrid contribution 0.181 -0.638 0.924 1.138 sum -19.167 -8.291 -11.494 23.837 Atomic orbital electron populations 1.22154 0.90565 1.04185 1.04860 1.21088 0.96029 0.98036 0.81260 0.85144 1.20672 0.81046 0.85234 0.84692 1.90776 1.36683 1.26001 1.86419 1.45781 1.53516 1.32193 1.04732 1.20739 1.00577 0.93496 0.80781 1.21855 0.93546 0.94633 0.95639 1.59860 1.01161 1.16730 1.47988 1.21690 0.89519 0.96871 1.00144 1.19727 0.83395 0.89849 0.84513 1.90517 1.72095 1.26471 1.57894 1.41848 1.08753 1.09952 1.59158 1.19645 0.92270 0.88467 1.42687 0.87955 1.25276 0.97240 0.98029 0.97329 1.69603 1.15001 1.21667 1.47868 0.85912 0.78338 0.80834 0.79102 1.19898 1.20931 1.19835 1.23647 1.05231 0.98882 0.96803 1.23164 0.91868 1.02144 1.03183 1.48193 1.19759 1.24310 1.21397 1.22379 0.99935 0.90760 0.94897 1.21454 0.99427 1.06314 1.03282 1.23892 0.99072 0.94056 0.97075 1.77430 1.01685 1.24428 1.07214 0.89156 0.90053 0.90953 0.75900 0.90951 0.90196 0.82471 0.93425 0.89506 0.77418 0.91743 0.88389 0.88317 0.88080 0.88155 0.81434 0.83593 0.80026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 8.74 37.15 0.32 -0.50 16 2 C 0.14 1.37 3.73 -69.08 -0.26 1.11 16 3 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.50 6.12 7.22 -10.98 -0.08 6.04 16 5 O -0.52 -8.82 16.41 5.56 0.09 -8.73 16 6 N -0.71 -7.27 5.41 -60.29 -0.33 -7.60 16 7 C 0.17 1.92 5.68 -4.04 -0.02 1.90 16 8 C 0.04 0.40 1.81 -131.60 -0.24 0.16 16 9 N -0.63 -9.29 6.29 -101.22 -0.64 -9.92 16 10 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 11 C 0.44 10.33 7.82 -10.98 -0.09 10.25 16 12 O -0.59 -15.68 15.79 5.55 0.09 -15.59 16 13 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 14 C -0.30 -8.46 9.68 -14.94 -0.14 -8.61 16 15 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 16 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 17 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 18 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C -0.21 -1.90 10.07 -26.69 -0.27 -2.17 16 23 C -0.17 -1.35 9.90 -26.69 -0.26 -1.62 16 24 N -0.35 -4.26 3.02 -55.99 -0.17 -4.43 16 25 C 0.07 0.67 10.57 -17.22 -0.18 0.49 16 26 C -0.28 -2.78 10.80 -40.02 -0.43 -3.21 16 27 C 0.05 0.53 12.03 -17.36 -0.21 0.32 16 28 N -0.29 -4.10 12.58 30.62 0.39 -3.71 16 29 H 0.09 0.29 7.56 -51.93 -0.39 -0.10 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.34 7.16 -51.93 -0.37 -0.03 16 32 H 0.41 3.27 7.83 -40.82 -0.32 2.95 16 33 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 34 H 0.08 1.14 6.52 -51.93 -0.34 0.80 16 35 H 0.35 5.39 8.32 -39.29 -0.33 5.07 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.48 6.62 -51.93 -0.34 1.14 16 38 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.17 1.15 7.27 -52.49 -0.38 0.76 16 45 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 46 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 393.88 15.07 5.94 5.94 Total: -1.00 -36.72 393.88 -7.50 -44.22 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -6.52 Total: 16.55 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.99 Total: 5.53 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: -0.08 Total: -64.13 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.18 Total: -24.32 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.72 -7.50 -44.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483720463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.080 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds