Wall clock time and date at job start Tue Mar 31 2020 18:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.46973 * 2 1 4 4 C 1.50703 * 109.47103 * 119.99648 * 2 1 3 5 5 O 1.21273 * 120.00038 * 120.00217 * 4 2 1 6 6 N 1.34781 * 119.99892 * 300.00257 * 4 2 1 7 7 C 1.46499 * 119.99777 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47094 * 175.58826 * 7 6 4 9 9 N 1.46892 * 115.55385 * 279.61957 * 8 7 6 10 10 C 1.46903 * 111.00000 * 294.62765 * 9 8 7 11 11 C 1.50701 * 109.47058 * 179.59603 * 10 9 8 12 12 O 1.21285 * 120.00020 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99593 * 179.97438 * 11 10 9 14 14 C 1.37093 * 119.99635 * 179.97438 * 13 11 10 15 15 H 1.08002 * 120.00209 * 0.02562 * 14 13 11 16 16 C 1.38947 * 119.99950 * 179.97438 * 14 13 11 17 17 N 1.31409 * 120.00141 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00283 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47017 * 60.00147 * 18 16 14 20 20 H 1.48498 * 109.47095 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46862 * 300.00400 * 18 16 14 22 22 C 1.52999 * 117.49555 * 133.94432 * 8 7 6 23 23 C 1.53007 * 117.49487 * 65.28634 * 8 7 6 24 24 N 1.46499 * 109.47594 * 240.00016 * 2 1 3 25 25 C 1.34953 * 126.03212 * 324.71394 * 24 2 1 26 26 C 1.35315 * 107.74120 * 179.83879 * 25 24 2 27 27 C 1.39863 * 107.92302 * 0.42647 * 26 25 24 28 28 N 1.30845 * 108.20327 * 359.73498 * 27 26 25 29 29 H 1.09000 * 109.47534 * 300.00195 * 1 2 3 30 30 H 1.09004 * 109.47278 * 60.00627 * 1 2 3 31 31 H 1.09007 * 109.46973 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99675 * 359.97438 * 6 4 2 33 33 H 1.08999 * 109.47205 * 295.59409 * 7 6 4 34 34 H 1.09001 * 109.47286 * 55.59285 * 7 6 4 35 35 H 1.00902 * 111.00130 * 170.67251 * 9 8 7 36 36 H 1.08999 * 109.47015 * 299.59429 * 10 9 8 37 37 H 1.09000 * 109.47213 * 59.59483 * 10 9 8 38 38 H 0.96998 * 120.00059 * 0.02562 * 13 11 10 39 39 H 0.96998 * 120.00092 * 179.97438 * 17 16 14 40 40 H 1.08996 * 117.50345 * 0.02562 * 22 8 7 41 41 H 1.09003 * 117.49747 * 145.02483 * 22 8 7 42 42 H 1.08998 * 117.49894 * 214.97642 * 23 8 7 43 43 H 1.09004 * 117.49599 * 359.97438 * 23 8 7 44 44 H 1.08001 * 126.12536 * 359.97438 * 25 24 2 45 45 H 1.08005 * 126.04084 * 180.15941 * 26 25 24 46 46 H 1.08002 * 125.90133 * 179.71275 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7295 -1.6963 1.1193 6 7 1.7066 -0.2498 2.4546 7 6 2.1945 -0.9407 3.6508 8 6 1.7772 -0.1581 4.8976 9 7 2.6161 1.0015 5.2281 10 6 3.9755 0.5809 5.5931 11 6 4.8076 1.7953 5.9153 12 8 4.3167 2.9023 5.8471 13 7 6.0973 1.6512 6.2792 14 6 6.8545 2.7561 6.5717 15 1 6.4173 3.7418 6.5110 16 6 8.1839 2.6076 6.9474 17 7 8.7157 1.4082 7.0217 18 14 9.2155 4.1129 7.3468 19 1 8.6015 4.8465 8.4827 20 1 10.5894 3.6876 7.7163 21 1 9.2755 5.0013 6.1583 22 6 1.1769 -0.9504 6.0607 23 6 0.2807 -0.0565 5.1998 24 7 2.0184 -0.6906 -1.1961 25 6 1.4432 -1.7593 -1.7863 26 6 2.1964 -2.0924 -2.8599 27 6 3.2739 -1.2029 -2.9226 28 7 3.1682 -0.3620 -1.9256 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.1492 0.5390 2.5435 33 1 1.7678 -1.9429 3.6910 34 1 3.2816 -1.0100 3.6124 35 1 2.1984 1.5522 5.9632 36 1 3.9321 -0.0716 6.4651 37 1 4.4256 0.0429 4.7588 38 1 6.4900 0.7660 6.3333 39 1 9.6439 1.3046 7.2836 40 1 1.0796 -2.0290 5.9380 41 1 1.4042 -0.6108 7.0713 42 1 -0.0812 0.8706 5.6443 43 1 -0.4064 -0.5468 4.5101 44 1 0.5419 -2.2577 -1.4613 45 1 2.0024 -2.9047 -3.5448 46 1 4.0579 -1.2091 -3.6653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483720463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:31 Heat of formation + Delta-G solvation = 14.262240 kcal Electronic energy + Delta-G solvation = -28340.743966 eV Core-core repulsion = 24267.201440 eV Total energy + Delta-G solvation = -4073.542526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.26689 -40.93944 -40.25703 -39.21982 -36.06449 -35.71639 -35.18911 -33.95129 -33.23495 -31.07460 -30.52579 -28.39175 -28.15181 -25.91925 -25.58059 -23.45600 -22.48298 -21.97798 -21.23745 -21.04890 -20.54557 -19.95078 -18.75023 -18.16839 -17.90665 -17.08460 -17.00142 -16.50868 -16.39681 -16.27773 -15.84963 -15.60737 -15.37043 -15.27577 -14.70225 -14.67064 -14.42994 -14.17781 -13.95599 -13.75905 -13.58819 -13.53420 -13.39757 -13.25714 -12.97821 -12.88720 -12.60562 -12.47118 -12.39975 -12.15238 -11.90116 -11.62557 -11.53443 -11.30451 -11.13487 -10.39749 -10.35009 -10.18887 -10.06264 -9.52115 -9.29642 -8.50048 -5.99583 0.88878 1.37098 1.39094 1.41042 1.44613 1.50455 1.98383 1.99570 2.09654 2.25286 2.62322 3.00318 3.16983 3.38882 3.43492 3.57329 3.63529 3.77205 3.81849 3.98135 4.00630 4.14450 4.22421 4.39808 4.46388 4.54197 4.57392 4.64065 4.66408 4.73416 4.75533 4.77671 4.88800 5.00412 5.08948 5.15788 5.21914 5.29591 5.36832 5.73685 5.81499 6.02211 6.07629 6.31785 6.44347 6.54557 6.77466 7.07670 7.07863 7.50754 8.04954 8.67233 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011158 B = 0.002531 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.828274 B =11062.274589 C =12800.161198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.140 3.860 3 H 0.128 0.872 4 C 0.499 3.501 5 O -0.576 6.576 6 N -0.696 5.696 7 C 0.171 3.829 8 C 0.018 3.982 9 N -0.636 5.636 10 C 0.067 3.933 11 C 0.438 3.562 12 O -0.620 6.620 13 N -0.573 5.573 14 C -0.335 4.335 15 H 0.081 0.919 16 C -0.014 4.014 17 N -0.922 5.922 18 Si 0.994 3.006 19 H -0.268 1.268 20 H -0.270 1.270 21 H -0.273 1.273 22 C -0.199 4.199 23 C -0.138 4.138 24 N -0.365 5.365 25 C 0.063 3.937 26 C -0.285 4.285 27 C 0.036 3.964 28 N -0.345 5.345 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.418 0.582 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.352 0.648 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.395 0.605 39 H 0.278 0.722 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.201 0.799 45 H 0.171 0.829 46 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.688 -9.473 -12.431 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.034 3.966 3 H 0.146 0.854 4 C 0.284 3.716 5 O -0.456 6.456 6 N -0.348 5.348 7 C 0.047 3.953 8 C -0.075 4.075 9 N -0.268 5.268 10 C -0.065 4.065 11 C 0.226 3.774 12 O -0.506 6.506 13 N -0.210 5.210 14 C -0.465 4.465 15 H 0.099 0.901 16 C -0.214 4.214 17 N -0.562 5.562 18 Si 0.818 3.182 19 H -0.193 1.193 20 H -0.195 1.195 21 H -0.198 1.198 22 C -0.240 4.240 23 C -0.175 4.175 24 N -0.147 5.147 25 C -0.082 4.082 26 C -0.314 4.314 27 C -0.150 4.150 28 N -0.166 5.166 29 H 0.132 0.868 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.256 0.744 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.173 0.827 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.228 0.772 39 H 0.088 0.912 40 H 0.131 0.869 41 H 0.111 0.889 42 H 0.124 0.876 43 H 0.145 0.855 44 H 0.217 0.783 45 H 0.189 0.811 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -21.669 -8.266 -12.429 26.313 hybrid contribution 0.826 -0.486 0.923 1.330 sum -20.843 -8.752 -11.506 25.366 Atomic orbital electron populations 1.22204 0.86757 1.05325 1.06519 1.21338 0.98793 0.97075 0.79426 0.85390 1.21192 0.80093 0.84581 0.85767 1.90747 1.39108 1.28509 1.87196 1.45713 1.52854 1.32180 1.04047 1.20652 0.98698 0.94516 0.81436 1.21781 0.95083 0.94372 0.96244 1.59800 1.00364 1.18825 1.47784 1.21446 0.90278 0.93800 1.00937 1.20778 0.83017 0.91293 0.82357 1.90481 1.72716 1.28609 1.58841 1.41949 1.09588 1.09468 1.60020 1.19646 0.93472 0.88497 1.44844 0.90102 1.26094 0.97744 1.01026 0.96532 1.69673 1.15510 1.23178 1.47865 0.84971 0.77092 0.77339 0.78841 1.19313 1.19493 1.19787 1.23689 1.04640 0.99817 0.95821 1.23300 0.89898 1.02061 1.02269 1.48422 1.19395 1.25078 1.21813 1.23006 1.00683 0.90033 0.94491 1.21857 0.98902 1.06712 1.03894 1.24403 0.99958 0.93795 0.96834 1.77337 1.03741 1.26599 1.08960 0.86773 0.89069 0.90024 0.74427 0.89540 0.93579 0.82738 0.91443 0.89300 0.77154 0.91248 0.86935 0.88850 0.87583 0.85536 0.78257 0.81110 0.78063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.74 71.98 0.63 -0.51 16 2 C 0.14 2.57 3.73 44.24 0.16 2.73 16 3 H 0.13 2.35 8.14 -2.38 -0.02 2.33 16 4 C 0.50 11.98 7.22 87.66 0.63 12.61 16 5 O -0.58 -19.75 16.41 -3.01 -0.05 -19.80 16 6 N -0.70 -13.35 5.41 -463.06 -2.51 -15.86 16 7 C 0.17 3.73 5.68 86.38 0.49 4.23 16 8 C 0.02 0.35 1.81 3.53 0.01 0.36 16 9 N -0.64 -18.42 6.29 -474.14 -2.98 -21.40 16 10 C 0.07 2.35 6.01 85.56 0.51 2.86 16 11 C 0.44 21.08 7.82 87.66 0.69 21.76 16 12 O -0.62 -34.08 15.79 -3.04 -0.05 -34.13 16 13 N -0.57 -30.19 5.29 -306.99 -1.62 -31.81 16 14 C -0.34 -19.37 9.68 84.04 0.81 -18.56 16 15 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 16 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 17 N -0.92 -51.03 13.05 21.66 0.28 -50.75 16 18 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 22 C -0.20 -3.14 10.07 30.62 0.31 -2.83 16 23 C -0.14 -1.76 9.90 30.62 0.30 -1.45 16 24 N -0.36 -8.65 3.02 -331.06 -1.00 -9.65 16 25 C 0.06 1.20 10.57 83.54 0.88 2.08 16 26 C -0.28 -5.45 10.80 21.99 0.24 -5.21 16 27 C 0.04 0.83 12.03 85.23 1.02 1.86 16 28 N -0.35 -10.11 12.58 -57.02 -0.72 -10.83 16 29 H 0.11 0.32 7.56 -2.39 -0.02 0.30 16 30 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.08 0.50 7.16 -2.38 -0.02 0.48 16 32 H 0.42 5.84 7.83 -92.71 -0.73 5.12 16 33 H 0.09 1.66 7.95 -2.39 -0.02 1.64 16 34 H 0.05 1.33 6.52 -2.39 -0.02 1.32 16 35 H 0.35 10.45 8.32 -89.69 -0.75 9.70 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.09 3.10 6.62 -2.39 -0.02 3.08 16 38 H 0.39 20.02 7.90 -92.71 -0.73 19.28 16 39 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 40 H 0.11 1.48 8.08 -2.39 -0.02 1.46 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.13 1.01 8.14 -2.39 -0.02 1.00 16 44 H 0.20 2.20 7.27 -2.91 -0.02 2.18 16 45 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.20 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -83.23 393.88 -0.62 -83.84 By element: Atomic # 1 Polarization: 46.25 SS G_CDS: -1.16 Total: 45.09 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 7.16 Total: 19.63 kcal Atomic # 7 Polarization: -131.76 SS G_CDS: -8.54 Total: -140.30 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -0.10 Total: -53.93 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -83.23 -0.62 -83.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483720463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.105 kcal (2) G-P(sol) polarization free energy of solvation -83.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds