Wall clock time and date at job start Tue Mar 31 2020 18:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 N 1.46500 * 109.47226 * 184.99495 * 4 2 1 6 6 C 1.46501 * 119.99484 * 90.00353 * 5 4 2 7 7 C 1.34767 * 120.00471 * 270.00543 * 5 4 2 8 8 O 1.21285 * 120.00250 * 359.97438 * 7 5 4 9 9 C 1.50703 * 120.00148 * 179.97438 * 7 5 4 10 10 H 1.08998 * 110.85738 * 297.65975 * 9 7 5 11 11 C 1.54631 * 110.97129 * 61.45206 * 9 7 5 12 12 C 1.51284 * 104.19560 * 142.91327 * 11 9 7 13 13 O 1.21303 * 124.93958 * 163.70981 * 12 11 9 14 14 N 1.34410 * 110.11689 * 343.74900 * 12 11 9 15 15 C 1.40767 * 124.34955 * 179.56579 * 14 12 11 16 16 C 1.40251 * 126.07946 * 179.66506 * 15 14 12 17 17 N 1.30830 * 108.33141 * 179.81971 * 16 15 14 18 18 N 1.40065 * 108.37250 * 0.44018 * 17 16 15 19 19 H 0.96999 * 126.06132 * 179.71394 * 18 17 16 20 20 C 1.35751 * 126.07930 * 359.97438 * 15 14 12 21 21 C 1.46767 * 111.30278 * 359.59049 * 14 12 11 22 22 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 23 23 C 1.36943 * 119.99752 * 274.72222 * 22 2 1 24 24 H 1.08002 * 119.99793 * 0.27665 * 23 22 2 25 25 C 1.38811 * 120.00012 * 180.27737 * 23 22 2 26 26 N 1.31611 * 120.00081 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99814 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47483 * 90.00178 * 27 25 23 29 29 H 1.48498 * 109.47011 * 210.00042 * 27 25 23 30 30 H 1.48502 * 109.47495 * 329.99664 * 27 25 23 31 31 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 32 32 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 34 34 H 1.08995 * 109.47415 * 304.99804 * 4 2 1 35 35 H 1.09008 * 109.47087 * 65.00143 * 4 2 1 36 36 H 1.08999 * 109.47498 * 90.00135 * 6 5 4 37 37 H 1.09004 * 109.47086 * 210.00488 * 6 5 4 38 38 H 1.09004 * 109.47434 * 329.99682 * 6 5 4 39 39 H 1.08999 * 110.48622 * 261.59521 * 11 9 7 40 40 H 1.08998 * 110.48271 * 24.10734 * 11 9 7 41 41 H 1.07998 * 125.83495 * 0.02562 * 16 15 14 42 42 H 1.08001 * 126.21856 * 0.02562 * 20 15 14 43 43 H 1.09000 * 110.24347 * 258.01182 * 21 14 12 44 44 H 1.09007 * 110.24248 * 136.01489 * 21 14 12 45 45 H 0.97001 * 120.00384 * 95.00578 * 22 2 1 46 46 H 0.97008 * 120.00329 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1906 6 6 4.1258 -1.9919 -0.5613 7 6 4.2675 0.1492 -1.7156 8 8 3.7494 1.1140 -2.2370 9 6 5.7694 0.0414 -1.6547 10 1 6.1159 0.0272 -0.6214 11 6 6.2662 -1.2057 -2.4222 12 6 7.5546 -0.7522 -3.0727 13 8 8.3995 -1.4922 -3.5309 14 7 7.6271 0.5900 -3.0683 15 6 8.7051 1.3288 -3.5914 16 6 8.8155 2.7268 -3.6119 17 7 9.9550 3.0414 -4.1723 18 7 10.6084 1.8579 -4.5387 19 1 11.4712 1.7943 -4.9774 20 6 9.8199 0.8151 -4.1711 21 6 6.4384 1.1862 -2.4474 22 7 2.0183 -0.6906 1.1962 23 6 2.1544 -0.0060 2.3744 24 1 1.8976 1.0419 2.4228 25 6 2.6226 -0.6590 3.5063 26 7 2.7530 -0.0012 4.6388 27 14 3.0675 -2.4713 3.4223 28 1 4.4987 -2.6131 3.0522 29 1 2.8342 -3.1002 4.7471 30 1 2.2233 -3.1415 2.4007 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.6054 -1.7198 -1.2951 35 1 1.7516 -0.1583 -2.1370 36 1 4.2822 -2.7688 -1.3096 37 1 5.0851 -1.7020 -0.1324 38 1 3.4757 -2.3722 0.2268 39 1 6.4561 -2.0278 -1.7321 40 1 5.5392 -1.5033 -3.1778 41 1 8.0861 3.4244 -3.2275 42 1 10.0396 -0.2326 -4.3145 43 1 5.7602 1.5608 -3.2141 44 1 6.7290 1.9921 -1.7734 45 1 2.2491 -1.6318 1.1526 46 1 3.0798 -0.4576 5.4300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485875432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:56 Heat of formation + Delta-G solvation = 41.245636 kcal Electronic energy + Delta-G solvation = -29527.025865 eV Core-core repulsion = 25454.653427 eV Total energy + Delta-G solvation = -4072.372438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.81392 -40.72729 -39.40893 -36.91848 -36.28191 -34.62515 -33.28608 -32.04331 -31.57067 -29.67549 -28.92622 -28.05711 -27.08481 -26.01447 -23.70758 -23.08093 -22.74165 -21.37797 -20.29531 -19.62608 -19.10584 -18.40036 -17.75525 -17.51041 -16.67417 -16.23366 -15.62963 -15.55797 -15.11810 -14.92610 -14.76327 -14.63764 -14.20711 -14.03518 -13.79372 -13.55883 -13.39516 -12.98618 -12.92162 -12.82271 -12.57395 -12.40616 -12.09120 -11.76401 -11.65392 -11.60944 -11.49485 -11.28859 -11.01701 -10.74947 -10.61915 -10.59125 -10.25911 -10.19236 -9.96253 -9.70700 -9.60310 -9.01920 -8.45220 -7.98468 -7.32402 -5.82078 -3.17468 1.49455 1.98011 2.25940 2.61890 2.81229 2.85000 3.08601 3.24279 3.25589 3.36784 3.89483 4.03307 4.43325 4.50083 4.52230 4.62547 4.71944 4.89307 5.09865 5.16634 5.21352 5.22812 5.26950 5.33718 5.36665 5.44725 5.47387 5.54670 5.60905 5.68912 5.81547 5.86479 5.96976 6.11524 6.13129 6.41192 6.50229 6.56841 6.72723 6.74211 6.92350 6.98887 7.29378 7.44560 7.83606 7.95113 8.20310 8.36372 9.14489 9.86265 10.05912 11.36628 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015473 B = 0.002936 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.176396 B = 9534.323639 C = 9891.475188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.160 3.840 3 H 0.061 0.939 4 C 0.107 3.893 5 N -0.592 5.592 6 C 0.073 3.927 7 C 0.531 3.469 8 O -0.538 6.538 9 C -0.123 4.123 10 H 0.126 0.874 11 C -0.141 4.141 12 C 0.519 3.481 13 O -0.526 6.526 14 N -0.533 5.533 15 C 0.010 3.990 16 C 0.045 3.955 17 N -0.278 5.278 18 N -0.475 5.475 19 H 0.445 0.555 20 C 0.041 3.959 21 C 0.119 3.881 22 N -0.745 5.745 23 C -0.237 4.237 24 H 0.089 0.911 25 C 0.004 3.996 26 N -0.934 5.934 27 Si 0.877 3.123 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.190 0.810 42 H 0.191 0.809 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.357 0.643 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.869 -2.048 -18.284 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 H 0.079 0.921 4 C -0.016 4.016 5 N -0.323 5.323 6 C -0.070 4.070 7 C 0.318 3.682 8 O -0.415 6.415 9 C -0.145 4.145 10 H 0.143 0.857 11 C -0.181 4.181 12 C 0.308 3.692 13 O -0.402 6.402 14 N -0.259 5.259 15 C -0.093 4.093 16 C -0.144 4.144 17 N -0.101 5.101 18 N -0.187 5.187 19 H 0.289 0.711 20 C -0.107 4.107 21 C -0.004 4.004 22 N -0.390 5.390 23 C -0.367 4.367 24 H 0.107 0.893 25 C -0.192 4.192 26 N -0.582 5.582 27 Si 0.708 3.292 28 H -0.209 1.209 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.206 0.794 42 H 0.208 0.792 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.191 0.809 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.794 -0.809 -18.960 21.832 hybrid contribution 0.084 -2.123 0.533 2.191 sum 10.878 -2.932 -18.427 21.598 Atomic orbital electron populations 1.22346 0.98270 1.00879 1.00879 1.20629 0.92200 0.96591 0.85589 0.92051 1.21948 0.78341 1.01426 0.99906 1.47517 1.06904 1.21099 1.56783 1.22035 0.99542 0.87641 0.97804 1.19805 0.87893 0.82424 0.78127 1.90697 1.74577 1.30904 1.45328 1.22247 0.94031 0.95659 1.02582 0.85657 1.22409 0.95771 0.98563 1.01397 1.20858 0.88108 0.81360 0.78910 1.90664 1.44177 1.57585 1.47797 1.45222 1.17786 1.06205 1.56729 1.17591 0.91379 0.90859 1.09422 1.23752 0.96374 0.93466 1.00806 1.77286 1.07747 1.06170 1.18892 1.46150 1.19489 1.03258 1.49780 0.71064 1.22530 0.91855 0.95098 1.01259 1.22099 0.85042 0.95480 0.97755 1.42849 1.79882 1.08958 1.07274 1.19067 1.36344 0.95496 0.85762 0.89286 1.24654 1.01754 0.97159 0.95629 1.69687 1.52657 1.35436 1.00403 0.86695 0.78318 0.87162 0.77063 1.20943 1.21754 1.20457 0.93924 0.93597 0.92064 0.90832 0.89512 0.92509 0.90768 0.90517 0.86572 0.86963 0.79352 0.79179 0.88273 0.88846 0.80879 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.49 37.16 0.35 -2.31 16 2 C 0.16 2.86 3.20 -67.93 -0.22 2.64 16 3 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 4 C 0.11 1.51 5.05 -4.04 -0.02 1.49 16 5 N -0.59 -7.96 2.73 -181.57 -0.50 -8.45 16 6 C 0.07 0.86 8.61 59.85 0.52 1.37 16 7 C 0.53 7.17 6.99 -10.99 -0.08 7.09 16 8 O -0.54 -8.73 15.15 5.55 0.08 -8.65 16 9 C -0.12 -1.29 2.57 -90.14 -0.23 -1.52 16 10 H 0.13 1.26 7.56 -51.93 -0.39 0.87 16 11 C -0.14 -1.30 5.04 -26.74 -0.13 -1.43 16 12 C 0.52 6.00 7.98 -10.86 -0.09 5.92 16 13 O -0.53 -7.33 15.64 5.54 0.09 -7.24 16 14 N -0.53 -5.79 3.16 -112.48 -0.36 -6.15 16 15 C 0.01 0.11 6.80 -83.88 -0.57 -0.46 16 16 C 0.04 0.46 11.53 -17.22 -0.20 0.26 16 17 N -0.28 -3.02 12.69 30.70 0.39 -2.63 16 18 N -0.47 -4.15 7.40 30.69 0.23 -3.92 16 19 H 0.44 2.34 8.96 -182.63 -1.64 0.70 16 20 C 0.04 0.41 11.18 -16.68 -0.19 0.23 16 21 C 0.12 1.19 6.24 -3.12 -0.02 1.17 16 22 N -0.74 -15.89 4.37 -53.43 -0.23 -16.13 16 23 C -0.24 -6.27 10.41 -15.06 -0.16 -6.42 16 24 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 25 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 26 N -0.93 -28.32 13.97 55.49 0.78 -27.55 16 27 Si 0.88 20.41 27.45 -169.99 -4.67 15.74 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.28 -5.97 6.52 56.52 0.37 -5.61 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.71 8.14 -51.92 -0.42 0.28 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.09 1.18 7.42 -51.92 -0.39 0.80 16 36 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 37 H 0.07 0.81 5.96 -51.93 -0.31 0.50 16 38 H 0.08 1.07 5.33 -51.93 -0.28 0.79 16 39 H 0.12 0.90 7.10 -51.93 -0.37 0.54 16 40 H 0.11 0.96 7.89 -51.93 -0.41 0.55 16 41 H 0.19 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.19 1.86 6.51 -52.49 -0.34 1.52 16 43 H 0.10 1.06 7.06 -51.93 -0.37 0.69 16 44 H 0.09 0.84 8.13 -51.92 -0.42 0.42 16 45 H 0.36 7.29 3.21 -40.82 -0.13 7.16 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 371.90 15.07 5.60 5.60 Total: -1.00 -34.76 371.90 -7.28 -42.04 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.57 Total: 9.30 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -1.13 Total: 8.03 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: 0.31 Total: -64.83 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.17 Total: -15.89 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.76 -7.28 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485875432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.288 kcal (2) G-P(sol) polarization free energy of solvation -34.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds