Wall clock time and date at job start Tue Mar 31 2020 18:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 N 1.46500 * 109.47226 * 184.99495 * 4 2 1 6 6 C 1.46501 * 119.99484 * 90.00353 * 5 4 2 7 7 C 1.34767 * 120.00471 * 270.00543 * 5 4 2 8 8 O 1.21285 * 120.00250 * 359.97438 * 7 5 4 9 9 C 1.50703 * 120.00148 * 179.97438 * 7 5 4 10 10 H 1.08998 * 110.85738 * 297.65975 * 9 7 5 11 11 C 1.54631 * 110.97129 * 61.45206 * 9 7 5 12 12 C 1.51284 * 104.19560 * 142.91327 * 11 9 7 13 13 O 1.21303 * 124.93958 * 163.70981 * 12 11 9 14 14 N 1.34410 * 110.11689 * 343.74900 * 12 11 9 15 15 C 1.40767 * 124.34955 * 179.56579 * 14 12 11 16 16 C 1.40251 * 126.07946 * 179.66506 * 15 14 12 17 17 N 1.30830 * 108.33141 * 179.81971 * 16 15 14 18 18 N 1.40065 * 108.37250 * 0.44018 * 17 16 15 19 19 H 0.96999 * 126.06132 * 179.71394 * 18 17 16 20 20 C 1.35751 * 126.07930 * 359.97438 * 15 14 12 21 21 C 1.46767 * 111.30278 * 359.59049 * 14 12 11 22 22 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 23 23 C 1.36943 * 119.99752 * 274.72222 * 22 2 1 24 24 H 1.08002 * 119.99793 * 0.27665 * 23 22 2 25 25 C 1.38811 * 120.00012 * 180.27737 * 23 22 2 26 26 N 1.31611 * 120.00081 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99814 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47483 * 90.00178 * 27 25 23 29 29 H 1.48498 * 109.47011 * 210.00042 * 27 25 23 30 30 H 1.48502 * 109.47495 * 329.99664 * 27 25 23 31 31 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 32 32 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 34 34 H 1.08995 * 109.47415 * 304.99804 * 4 2 1 35 35 H 1.09008 * 109.47087 * 65.00143 * 4 2 1 36 36 H 1.08999 * 109.47498 * 90.00135 * 6 5 4 37 37 H 1.09004 * 109.47086 * 210.00488 * 6 5 4 38 38 H 1.09004 * 109.47434 * 329.99682 * 6 5 4 39 39 H 1.08999 * 110.48622 * 261.59521 * 11 9 7 40 40 H 1.08998 * 110.48271 * 24.10734 * 11 9 7 41 41 H 1.07998 * 125.83495 * 0.02562 * 16 15 14 42 42 H 1.08001 * 126.21856 * 0.02562 * 20 15 14 43 43 H 1.09000 * 110.24347 * 258.01182 * 21 14 12 44 44 H 1.09007 * 110.24248 * 136.01489 * 21 14 12 45 45 H 0.97001 * 120.00384 * 95.00578 * 22 2 1 46 46 H 0.97008 * 120.00329 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1906 6 6 4.1258 -1.9919 -0.5613 7 6 4.2675 0.1492 -1.7156 8 8 3.7494 1.1140 -2.2370 9 6 5.7694 0.0414 -1.6547 10 1 6.1159 0.0272 -0.6214 11 6 6.2662 -1.2057 -2.4222 12 6 7.5546 -0.7522 -3.0727 13 8 8.3995 -1.4922 -3.5309 14 7 7.6271 0.5900 -3.0683 15 6 8.7051 1.3288 -3.5914 16 6 8.8155 2.7268 -3.6119 17 7 9.9550 3.0414 -4.1723 18 7 10.6084 1.8579 -4.5387 19 1 11.4712 1.7943 -4.9774 20 6 9.8199 0.8151 -4.1711 21 6 6.4384 1.1862 -2.4474 22 7 2.0183 -0.6906 1.1962 23 6 2.1544 -0.0060 2.3744 24 1 1.8976 1.0419 2.4228 25 6 2.6226 -0.6590 3.5063 26 7 2.7530 -0.0012 4.6388 27 14 3.0675 -2.4713 3.4223 28 1 4.4987 -2.6131 3.0522 29 1 2.8342 -3.1002 4.7471 30 1 2.2233 -3.1415 2.4007 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.6054 -1.7198 -1.2951 35 1 1.7516 -0.1583 -2.1370 36 1 4.2822 -2.7688 -1.3096 37 1 5.0851 -1.7020 -0.1324 38 1 3.4757 -2.3722 0.2268 39 1 6.4561 -2.0278 -1.7321 40 1 5.5392 -1.5033 -3.1778 41 1 8.0861 3.4244 -3.2275 42 1 10.0396 -0.2326 -4.3145 43 1 5.7602 1.5608 -3.2141 44 1 6.7290 1.9921 -1.7734 45 1 2.2491 -1.6318 1.1526 46 1 3.0798 -0.4576 5.4300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485875432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:55 Heat of formation + Delta-G solvation = 16.073580 kcal Electronic energy + Delta-G solvation = -29528.117407 eV Core-core repulsion = 25454.653427 eV Total energy + Delta-G solvation = -4073.463980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.62201 -41.61334 -40.40435 -38.15754 -37.33820 -35.92781 -34.39084 -33.68232 -32.35201 -31.35787 -29.81559 -28.87216 -28.12813 -27.08765 -25.41952 -24.05868 -23.67618 -22.19227 -21.75348 -20.44918 -20.21534 -19.58230 -19.20421 -18.45704 -17.52859 -17.30789 -16.71083 -16.57718 -16.39334 -16.12072 -15.71903 -15.51355 -15.46746 -15.05134 -14.93011 -14.79539 -14.41800 -14.18568 -14.04417 -13.84044 -13.75525 -13.68682 -13.22795 -13.17224 -12.80392 -12.65376 -12.56911 -12.43540 -12.33374 -12.13094 -12.08090 -11.76949 -11.71524 -11.41364 -11.19922 -10.95504 -10.73494 -10.69191 -9.59829 -9.19974 -8.80005 -7.95284 -5.28417 0.70802 1.15311 1.38621 1.45947 1.49415 1.53684 1.61247 1.99177 2.02468 2.20065 2.54141 3.06059 3.22971 3.36251 3.58103 3.62580 3.73905 3.88676 3.94059 4.04795 4.16309 4.31735 4.40603 4.42009 4.45085 4.52159 4.63058 4.66110 4.69718 4.72718 4.77107 4.87430 4.92031 4.96249 5.05088 5.10485 5.29116 5.40388 5.67942 5.70239 5.84522 5.92114 6.26647 6.26738 6.43371 6.55675 6.98423 7.14972 7.17218 7.88895 8.11791 9.26981 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015473 B = 0.002936 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.176396 B = 9534.323639 C = 9891.475188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.027 0.973 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.064 3.936 7 C 0.527 3.473 8 O -0.571 6.571 9 C -0.116 4.116 10 H 0.132 0.868 11 C -0.129 4.129 12 C 0.512 3.488 13 O -0.554 6.554 14 N -0.531 5.531 15 C -0.014 4.014 16 C 0.042 3.958 17 N -0.300 5.300 18 N -0.462 5.462 19 H 0.458 0.542 20 C 0.045 3.955 21 C 0.121 3.879 22 N -0.740 5.740 23 C -0.220 4.220 24 H 0.043 0.957 25 C -0.068 4.068 26 N -0.990 5.990 27 Si 0.949 3.051 28 H -0.262 1.262 29 H -0.307 1.307 30 H -0.245 1.245 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.138 0.862 40 H 0.124 0.876 41 H 0.206 0.794 42 H 0.194 0.806 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.367 0.633 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.319 -4.602 -20.137 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.045 0.955 4 C -0.009 4.009 5 N -0.326 5.326 6 C -0.078 4.078 7 C 0.315 3.685 8 O -0.451 6.451 9 C -0.137 4.137 10 H 0.150 0.850 11 C -0.169 4.169 12 C 0.302 3.698 13 O -0.432 6.432 14 N -0.256 5.256 15 C -0.117 4.117 16 C -0.146 4.146 17 N -0.123 5.123 18 N -0.176 5.176 19 H 0.306 0.694 20 C -0.105 4.105 21 C -0.001 4.001 22 N -0.386 5.386 23 C -0.351 4.351 24 H 0.061 0.939 25 C -0.259 4.259 26 N -0.641 5.641 27 Si 0.776 3.224 28 H -0.187 1.187 29 H -0.235 1.235 30 H -0.169 1.169 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.155 0.845 40 H 0.142 0.858 41 H 0.223 0.777 42 H 0.211 0.789 43 H 0.110 0.890 44 H 0.120 0.880 45 H 0.203 0.797 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.249 -3.362 -20.886 23.960 hybrid contribution -0.085 -1.179 1.058 1.586 sum 11.164 -4.541 -19.828 23.203 Atomic orbital electron populations 1.22221 0.96825 1.01842 1.00720 1.20780 0.93208 0.95168 0.86182 0.95508 1.21828 0.79107 1.02431 0.97507 1.47644 1.06670 1.21700 1.56623 1.22269 0.99204 0.87823 0.98545 1.20262 0.89032 0.81785 0.77398 1.90685 1.75433 1.32146 1.46810 1.22160 0.91816 0.96605 1.03161 0.85024 1.22423 0.94531 0.98278 1.01674 1.21259 0.88535 0.81317 0.78656 1.90649 1.45251 1.58160 1.49188 1.45273 1.17771 1.06199 1.56392 1.17860 0.91957 0.91380 1.10483 1.24050 0.96495 0.93598 1.00415 1.77249 1.08302 1.07085 1.19644 1.46194 1.19841 1.02453 1.49134 0.69408 1.22629 0.91778 0.95404 1.00677 1.22074 0.84701 0.95666 0.97660 1.42726 1.80020 1.09270 1.06576 1.18909 1.34543 0.93864 0.87775 0.93884 1.25517 1.02574 1.02804 0.94970 1.69911 1.54892 1.37898 1.01446 0.85536 0.79557 0.80320 0.77035 1.18718 1.23504 1.16890 0.91168 0.91975 0.95199 0.87980 0.88844 0.88485 0.90004 0.92287 0.84453 0.85780 0.77706 0.78876 0.88965 0.88021 0.79684 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 9.49 71.98 0.68 -4.20 16 2 C 0.16 5.41 3.20 44.99 0.14 5.55 16 3 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 4 C 0.11 2.91 5.05 86.38 0.44 3.34 16 5 N -0.60 -14.28 2.73 -846.75 -2.31 -16.59 16 6 C 0.06 1.23 8.61 127.77 1.10 2.33 16 7 C 0.53 13.24 6.99 87.66 0.61 13.85 16 8 O -0.57 -18.06 15.15 -3.05 -0.05 -18.11 16 9 C -0.12 -2.16 2.57 -10.48 -0.03 -2.19 16 10 H 0.13 2.34 7.56 -2.39 -0.02 2.32 16 11 C -0.13 -1.97 5.04 30.59 0.15 -1.82 16 12 C 0.51 10.88 7.98 87.90 0.70 11.58 16 13 O -0.55 -14.57 15.64 -3.10 -0.05 -14.62 16 14 N -0.53 -10.81 3.16 -628.35 -1.99 -12.80 16 15 C -0.01 -0.30 6.80 37.62 0.26 -0.05 16 16 C 0.04 0.83 11.53 85.33 0.98 1.82 16 17 N -0.30 -6.24 12.69 -56.77 -0.72 -6.96 16 18 N -0.46 -7.60 7.40 -56.81 -0.42 -8.02 16 19 H 0.46 4.28 8.96 -213.34 -1.91 2.37 16 20 C 0.04 0.85 11.18 83.50 0.93 1.79 16 21 C 0.12 2.28 6.24 86.83 0.54 2.82 16 22 N -0.74 -30.72 4.37 -322.94 -1.41 -32.13 16 23 C -0.22 -11.87 10.41 84.03 0.87 -10.99 16 24 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 25 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 26 N -0.99 -62.03 13.97 21.65 0.30 -61.73 16 27 Si 0.95 41.23 27.45 68.60 1.88 43.12 16 28 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 29 H -0.31 -14.19 7.11 99.48 0.71 -13.48 16 30 H -0.24 -9.16 6.52 99.48 0.65 -8.51 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 2.06 8.07 -2.39 -0.02 2.04 16 35 H 0.09 2.30 7.42 -2.38 -0.02 2.28 16 36 H 0.10 1.11 7.90 -2.39 -0.02 1.09 16 37 H 0.08 1.45 5.96 -2.39 -0.01 1.43 16 38 H 0.06 1.37 5.33 -2.39 -0.01 1.36 16 39 H 0.14 1.55 7.10 -2.39 -0.02 1.53 16 40 H 0.12 1.66 7.89 -2.39 -0.02 1.64 16 41 H 0.21 3.03 8.06 -2.91 -0.02 3.00 16 42 H 0.19 3.60 6.51 -2.91 -0.02 3.58 16 43 H 0.09 1.90 7.06 -2.39 -0.02 1.88 16 44 H 0.10 1.72 8.13 -2.38 -0.02 1.71 16 45 H 0.37 13.89 3.21 -92.71 -0.30 13.59 16 46 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -78.30 371.90 1.87 -76.43 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -1.24 Total: 30.92 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 7.86 Total: 20.50 kcal Atomic # 7 Polarization: -131.69 SS G_CDS: -6.55 Total: -138.23 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.09 Total: -32.73 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.88 Total: 43.12 kcal Total: -78.30 1.87 -76.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485875432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.506 kcal (2) G-P(sol) polarization free energy of solvation -78.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds