Wall clock time and date at job start Tue Mar 31 2020 18:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 N 1.46492 * 109.47631 * 174.99916 * 4 2 1 6 6 C 1.46500 * 120.00294 * 270.00226 * 5 4 2 7 7 C 1.34783 * 119.99857 * 90.00177 * 5 4 2 8 8 O 1.21280 * 119.99766 * 359.97438 * 7 5 4 9 9 C 1.50700 * 119.99888 * 180.02562 * 7 5 4 10 10 H 1.08995 * 110.85830 * 297.66430 * 9 7 5 11 11 C 1.54634 * 110.96767 * 61.45470 * 9 7 5 12 12 C 1.51287 * 104.19164 * 142.91343 * 11 9 7 13 13 O 1.21313 * 124.93580 * 163.71037 * 12 11 9 14 14 N 1.34415 * 110.11777 * 343.74774 * 12 11 9 15 15 C 1.40766 * 124.34805 * 179.57050 * 14 12 11 16 16 C 1.40255 * 126.07958 * 179.66488 * 15 14 12 17 17 N 1.30829 * 108.33304 * 179.81526 * 16 15 14 18 18 N 1.40073 * 108.36775 * 0.44492 * 17 16 15 19 19 H 0.97003 * 126.04708 * 179.71731 * 18 17 16 20 20 C 1.35754 * 126.07974 * 359.97351 * 15 14 12 21 21 C 1.46759 * 111.30042 * 359.59287 * 14 12 11 22 22 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 23 23 C 1.36939 * 119.99792 * 84.99599 * 22 2 1 24 24 H 1.08001 * 119.99680 * 0.02562 * 23 22 2 25 25 C 1.38809 * 119.99850 * 179.97438 * 23 22 2 26 26 N 1.31627 * 119.99799 * 180.02562 * 25 23 22 27 27 Si 1.86795 * 120.00165 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47258 * 89.99481 * 27 25 23 29 29 H 1.48497 * 109.47471 * 209.99641 * 27 25 23 30 30 H 1.48507 * 109.47323 * 329.99565 * 27 25 23 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 35 35 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 36 36 H 1.09012 * 109.47019 * 89.99870 * 6 5 4 37 37 H 1.08999 * 109.47072 * 209.99448 * 6 5 4 38 38 H 1.08996 * 109.47493 * 330.00178 * 6 5 4 39 39 H 1.08998 * 110.48320 * 261.59202 * 11 9 7 40 40 H 1.08997 * 110.48489 * 24.10979 * 11 9 7 41 41 H 1.07997 * 125.82848 * 0.02562 * 16 15 14 42 42 H 1.07999 * 126.21833 * 0.03096 * 20 15 14 43 43 H 1.08997 * 110.24429 * 258.01491 * 21 14 12 44 44 H 1.09005 * 110.24473 * 136.02069 * 21 14 12 45 45 H 0.96994 * 119.99975 * 265.00388 * 22 2 1 46 46 H 0.97005 * 119.99350 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5614 7 6 4.2675 0.1493 1.7157 8 8 3.7494 1.1144 2.2362 9 6 5.7694 0.0414 1.6549 10 1 6.1187 -0.8295 2.2094 11 6 6.2623 -0.0012 0.1898 12 6 7.5496 0.7934 0.2083 13 8 8.3922 0.7712 -0.6642 14 7 7.6241 1.5267 1.3323 15 6 8.7017 2.3712 1.6596 16 6 8.8142 3.1561 2.8165 17 7 9.9527 3.7988 2.7687 18 7 10.6032 3.4562 1.5765 19 1 11.4648 3.7892 1.2802 20 6 9.8142 2.5753 0.9088 21 6 6.4380 1.3334 2.1747 22 7 2.0184 -0.6906 -1.1961 23 6 2.1491 -0.0075 -2.3757 24 1 1.8925 1.0404 -2.4241 25 6 2.6124 -0.6618 -3.5089 26 7 2.7385 -0.0050 -4.6426 27 14 3.0568 -2.4741 -3.4250 28 1 1.8598 -3.2927 -3.7448 29 1 4.1326 -2.7660 -4.4061 30 1 3.5314 -2.8047 -2.0571 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.7516 -0.1583 2.1370 35 1 1.6054 -1.7198 1.2952 36 1 4.2798 -1.7932 -0.4994 37 1 5.0863 -2.1897 1.0371 38 1 3.4770 -2.8599 0.6779 39 1 6.4528 -1.0291 -0.1188 40 1 5.5328 0.4659 -0.4718 41 1 8.0868 3.2166 3.6126 42 1 10.0319 2.1202 -0.0461 43 1 5.7582 2.1788 2.0686 44 1 6.7315 1.2130 3.2175 45 1 2.2490 -1.6317 -1.1525 46 1 3.0619 -0.4624 -5.4346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485875433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:59 Heat of formation + Delta-G solvation = 39.330147 kcal Electronic energy + Delta-G solvation = -29934.590172 eV Core-core repulsion = 25862.134672 eV Total energy + Delta-G solvation = -4072.455500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70632 -40.63991 -39.31547 -36.82077 -36.18553 -34.58444 -33.19933 -32.01256 -31.48744 -29.63251 -28.83289 -27.92304 -27.05075 -25.97073 -23.63661 -23.01337 -22.67675 -21.27850 -20.27996 -19.48337 -19.03311 -18.29290 -17.70223 -17.46691 -16.59728 -16.13833 -15.66159 -15.39004 -15.09166 -14.73291 -14.70772 -14.54366 -14.09238 -13.82988 -13.76953 -13.48674 -13.31024 -13.04549 -12.87298 -12.69672 -12.45768 -12.36300 -12.11366 -11.73585 -11.60243 -11.49875 -11.41812 -11.21699 -10.99835 -10.72750 -10.63248 -10.50072 -10.12291 -10.03861 -9.88445 -9.63216 -9.58348 -8.99697 -8.41918 -7.87058 -7.28922 -5.79026 -3.14747 1.59153 2.12712 2.36462 2.63770 2.91830 2.94433 3.14893 3.22891 3.32739 3.40871 4.03190 4.14367 4.50964 4.53440 4.62455 4.69894 4.77133 4.93161 5.15829 5.21923 5.25615 5.31852 5.40598 5.43501 5.47681 5.48307 5.54901 5.63960 5.69590 5.85065 5.88994 5.94375 6.03436 6.12992 6.13938 6.40676 6.59400 6.63455 6.75718 6.86288 6.99968 7.01067 7.37395 7.47345 7.97560 8.02106 8.22715 8.39303 9.17544 9.89106 10.09213 11.39528 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.003574 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.065195 B = 7832.373330 C = 8959.403255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.160 3.840 3 H 0.060 0.940 4 C 0.108 3.892 5 N -0.592 5.592 6 C 0.067 3.933 7 C 0.529 3.471 8 O -0.539 6.539 9 C -0.121 4.121 10 H 0.117 0.883 11 C -0.143 4.143 12 C 0.521 3.479 13 O -0.520 6.520 14 N -0.537 5.537 15 C 0.012 3.988 16 C 0.042 3.958 17 N -0.280 5.280 18 N -0.474 5.474 19 H 0.445 0.555 20 C 0.041 3.959 21 C 0.121 3.879 22 N -0.744 5.744 23 C -0.239 4.239 24 H 0.088 0.912 25 C 0.005 3.995 26 N -0.933 5.933 27 Si 0.879 3.121 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.273 1.273 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.188 0.812 42 H 0.192 0.808 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.358 0.642 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.912 -1.705 17.199 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 H 0.078 0.922 4 C -0.015 4.015 5 N -0.323 5.323 6 C -0.076 4.076 7 C 0.316 3.684 8 O -0.416 6.416 9 C -0.143 4.143 10 H 0.135 0.865 11 C -0.183 4.183 12 C 0.310 3.690 13 O -0.395 6.395 14 N -0.264 5.264 15 C -0.090 4.090 16 C -0.146 4.146 17 N -0.103 5.103 18 N -0.186 5.186 19 H 0.289 0.711 20 C -0.107 4.107 21 C -0.002 4.002 22 N -0.388 5.388 23 C -0.369 4.369 24 H 0.106 0.894 25 C -0.191 4.191 26 N -0.581 5.581 27 Si 0.710 3.290 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.199 1.199 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.205 0.795 42 H 0.209 0.791 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.191 0.809 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.845 -0.227 17.420 20.521 hybrid contribution 0.045 -1.910 -0.885 2.105 sum 10.890 -2.136 16.535 19.914 Atomic orbital electron populations 1.22344 0.98306 1.00851 1.00856 1.20612 0.92168 0.96536 0.85673 0.92196 1.21964 0.78347 1.01369 0.99853 1.47523 1.06882 1.21089 1.56810 1.22197 0.97949 0.87645 0.99828 1.19840 0.87980 0.82438 0.78178 1.90694 1.74604 1.30882 1.45458 1.22195 0.93889 1.00177 0.98028 0.86460 1.22460 0.96120 1.03343 0.96426 1.20907 0.88028 0.79650 0.80453 1.90677 1.44215 1.65586 1.39050 1.45223 1.17855 1.41878 1.21442 1.17592 0.91362 1.02298 0.97797 1.23692 0.96403 0.96366 0.98168 1.77252 1.07960 1.22786 1.02338 1.46134 1.19609 1.36756 1.16143 0.71076 1.22568 0.91949 0.96391 0.99826 1.22037 0.85395 0.98056 0.94673 1.42733 1.79808 1.09149 1.07082 1.19048 1.36791 0.95554 0.85513 0.89394 1.24663 1.01645 0.97233 0.95571 1.69698 1.52628 1.35452 1.00284 0.86708 0.78140 0.87138 0.76993 1.21376 1.21845 1.19934 0.93600 0.92070 0.93984 0.89610 0.90900 0.90360 0.91498 0.91212 0.86769 0.85622 0.79525 0.79103 0.88304 0.89305 0.80917 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.49 37.16 0.35 -2.31 16 2 C 0.16 2.86 3.20 -67.93 -0.22 2.65 16 3 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 4 C 0.11 1.52 5.07 -4.05 -0.02 1.50 16 5 N -0.59 -7.97 2.73 -181.57 -0.50 -8.47 16 6 C 0.07 0.79 7.74 59.85 0.46 1.25 16 7 C 0.53 7.19 6.99 -10.98 -0.08 7.11 16 8 O -0.54 -8.81 15.15 5.56 0.08 -8.73 16 9 C -0.12 -1.27 2.57 -90.14 -0.23 -1.51 16 10 H 0.12 0.89 7.56 -51.93 -0.39 0.50 16 11 C -0.14 -1.80 5.05 -26.74 -0.13 -1.94 16 12 C 0.52 7.43 7.98 -10.86 -0.09 7.35 16 13 O -0.52 -8.89 15.64 5.53 0.09 -8.81 16 14 N -0.54 -6.61 3.16 -112.48 -0.36 -6.96 16 15 C 0.01 0.15 6.80 -83.88 -0.57 -0.42 16 16 C 0.04 0.45 11.53 -17.22 -0.20 0.26 16 17 N -0.28 -3.20 12.69 30.70 0.39 -2.81 16 18 N -0.47 -4.61 7.40 30.69 0.23 -4.38 16 19 H 0.44 2.77 8.96 -182.61 -1.64 1.14 16 20 C 0.04 0.47 11.18 -16.68 -0.19 0.29 16 21 C 0.12 1.26 6.24 -3.13 -0.02 1.24 16 22 N -0.74 -15.76 4.20 -53.43 -0.22 -15.99 16 23 C -0.24 -6.34 10.41 -15.06 -0.16 -6.49 16 24 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 25 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 26 N -0.93 -28.56 13.97 55.49 0.78 -27.79 16 27 Si 0.88 20.44 27.74 -169.99 -4.71 15.73 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H -0.27 -5.41 5.03 56.52 0.28 -5.12 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 1.17 7.42 -51.93 -0.39 0.79 16 35 H 0.07 0.89 7.89 -51.93 -0.41 0.48 16 36 H 0.08 1.16 5.69 -51.92 -0.30 0.87 16 37 H 0.07 0.57 5.96 -51.93 -0.31 0.26 16 38 H 0.07 0.74 7.89 -51.93 -0.41 0.33 16 39 H 0.11 1.26 7.10 -51.93 -0.37 0.89 16 40 H 0.13 1.94 7.89 -51.93 -0.41 1.53 16 41 H 0.19 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.19 2.22 6.51 -52.49 -0.34 1.88 16 43 H 0.10 1.19 7.06 -51.93 -0.37 0.82 16 44 H 0.09 0.70 8.13 -51.93 -0.42 0.28 16 45 H 0.36 7.23 4.15 -40.82 -0.17 7.06 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -35.03 370.80 -7.52 -42.56 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -7.70 Total: 11.06 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -1.18 Total: 9.00 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: 0.32 Total: -66.40 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.17 Total: -17.53 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.71 Total: 15.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.03 -7.52 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485875433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.886 kcal (2) G-P(sol) polarization free energy of solvation -35.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds