Wall clock time and date at job start Tue Mar 31 2020 18:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 N 1.46492 * 109.47631 * 174.99916 * 4 2 1 6 6 C 1.46500 * 120.00294 * 270.00226 * 5 4 2 7 7 C 1.34783 * 119.99857 * 90.00177 * 5 4 2 8 8 O 1.21280 * 119.99766 * 359.97438 * 7 5 4 9 9 C 1.50700 * 119.99888 * 180.02562 * 7 5 4 10 10 H 1.08995 * 110.85830 * 297.66430 * 9 7 5 11 11 C 1.54634 * 110.96767 * 61.45470 * 9 7 5 12 12 C 1.51287 * 104.19164 * 142.91343 * 11 9 7 13 13 O 1.21313 * 124.93580 * 163.71037 * 12 11 9 14 14 N 1.34415 * 110.11777 * 343.74774 * 12 11 9 15 15 C 1.40766 * 124.34805 * 179.57050 * 14 12 11 16 16 C 1.40255 * 126.07958 * 179.66488 * 15 14 12 17 17 N 1.30829 * 108.33304 * 179.81526 * 16 15 14 18 18 N 1.40073 * 108.36775 * 0.44492 * 17 16 15 19 19 H 0.97003 * 126.04708 * 179.71731 * 18 17 16 20 20 C 1.35754 * 126.07974 * 359.97351 * 15 14 12 21 21 C 1.46759 * 111.30042 * 359.59287 * 14 12 11 22 22 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 23 23 C 1.36939 * 119.99792 * 84.99599 * 22 2 1 24 24 H 1.08001 * 119.99680 * 0.02562 * 23 22 2 25 25 C 1.38809 * 119.99850 * 179.97438 * 23 22 2 26 26 N 1.31627 * 119.99799 * 180.02562 * 25 23 22 27 27 Si 1.86795 * 120.00165 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47258 * 89.99481 * 27 25 23 29 29 H 1.48497 * 109.47471 * 209.99641 * 27 25 23 30 30 H 1.48507 * 109.47323 * 329.99565 * 27 25 23 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 35 35 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 36 36 H 1.09012 * 109.47019 * 89.99870 * 6 5 4 37 37 H 1.08999 * 109.47072 * 209.99448 * 6 5 4 38 38 H 1.08996 * 109.47493 * 330.00178 * 6 5 4 39 39 H 1.08998 * 110.48320 * 261.59202 * 11 9 7 40 40 H 1.08997 * 110.48489 * 24.10979 * 11 9 7 41 41 H 1.07997 * 125.82848 * 0.02562 * 16 15 14 42 42 H 1.07999 * 126.21833 * 0.03096 * 20 15 14 43 43 H 1.08997 * 110.24429 * 258.01491 * 21 14 12 44 44 H 1.09005 * 110.24473 * 136.02069 * 21 14 12 45 45 H 0.96994 * 119.99975 * 265.00388 * 22 2 1 46 46 H 0.97005 * 119.99350 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5614 7 6 4.2675 0.1493 1.7157 8 8 3.7494 1.1144 2.2362 9 6 5.7694 0.0414 1.6549 10 1 6.1187 -0.8295 2.2094 11 6 6.2623 -0.0012 0.1898 12 6 7.5496 0.7934 0.2083 13 8 8.3922 0.7712 -0.6642 14 7 7.6241 1.5267 1.3323 15 6 8.7017 2.3712 1.6596 16 6 8.8142 3.1561 2.8165 17 7 9.9527 3.7988 2.7687 18 7 10.6032 3.4562 1.5765 19 1 11.4648 3.7892 1.2802 20 6 9.8142 2.5753 0.9088 21 6 6.4380 1.3334 2.1747 22 7 2.0184 -0.6906 -1.1961 23 6 2.1491 -0.0075 -2.3757 24 1 1.8925 1.0404 -2.4241 25 6 2.6124 -0.6618 -3.5089 26 7 2.7385 -0.0050 -4.6426 27 14 3.0568 -2.4741 -3.4250 28 1 1.8598 -3.2927 -3.7448 29 1 4.1326 -2.7660 -4.4061 30 1 3.5314 -2.8047 -2.0571 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.7516 -0.1583 2.1370 35 1 1.6054 -1.7198 1.2952 36 1 4.2798 -1.7932 -0.4994 37 1 5.0863 -2.1897 1.0371 38 1 3.4770 -2.8599 0.6779 39 1 6.4528 -1.0291 -0.1188 40 1 5.5328 0.4659 -0.4718 41 1 8.0868 3.2166 3.6126 42 1 10.0319 2.1202 -0.0461 43 1 5.7582 2.1788 2.0686 44 1 6.7315 1.2130 3.2175 45 1 2.2490 -1.6317 -1.1525 46 1 3.0619 -0.4624 -5.4346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485875433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:58 Heat of formation + Delta-G solvation = 13.102679 kcal Electronic energy + Delta-G solvation = -29935.727480 eV Core-core repulsion = 25862.134672 eV Total energy + Delta-G solvation = -4073.592808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.62303 -41.60621 -40.40226 -38.13602 -37.35712 -35.91414 -34.39578 -33.68880 -32.34522 -31.34247 -29.81092 -28.89594 -28.10675 -27.06055 -25.41360 -24.05842 -23.68827 -22.17394 -21.75640 -20.46677 -20.21434 -19.53294 -19.20833 -18.46676 -17.57833 -17.26638 -16.81111 -16.50503 -16.38435 -16.13204 -15.58396 -15.53065 -15.49165 -15.11855 -14.81288 -14.73061 -14.43367 -14.36471 -14.10154 -13.77975 -13.70290 -13.66496 -13.23670 -13.20230 -12.77128 -12.61672 -12.57199 -12.46459 -12.32924 -12.17669 -12.09330 -11.74239 -11.59491 -11.41407 -11.18565 -10.97070 -10.72955 -10.69605 -9.60947 -9.17337 -8.80345 -7.95387 -5.28548 0.69546 1.14299 1.37192 1.47406 1.50251 1.55402 1.59170 1.97933 2.04006 2.21537 2.55500 3.06241 3.24312 3.37169 3.60091 3.67688 3.73413 3.89544 3.94807 4.04988 4.16192 4.33394 4.42301 4.43152 4.44985 4.50259 4.62702 4.67920 4.68715 4.76169 4.78286 4.88298 4.93666 5.03462 5.06810 5.10304 5.29349 5.42426 5.69658 5.72243 5.83556 5.89706 6.25450 6.25923 6.45699 6.55659 6.96735 7.15585 7.18605 7.88936 8.13331 9.26823 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.003574 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.065195 B = 7832.373330 C = 8959.403255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.021 0.979 4 C 0.115 3.885 5 N -0.595 5.595 6 C 0.058 3.942 7 C 0.525 3.475 8 O -0.571 6.571 9 C -0.106 4.106 10 H 0.163 0.837 11 C -0.138 4.138 12 C 0.511 3.489 13 O -0.558 6.558 14 N -0.530 5.530 15 C -0.013 4.013 16 C 0.048 3.952 17 N -0.297 5.297 18 N -0.463 5.463 19 H 0.458 0.542 20 C 0.038 3.962 21 C 0.120 3.880 22 N -0.737 5.737 23 C -0.220 4.220 24 H 0.039 0.961 25 C -0.069 4.069 26 N -0.992 5.992 27 Si 0.948 3.052 28 H -0.287 1.287 29 H -0.307 1.307 30 H -0.214 1.214 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.046 0.954 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.215 0.785 42 H 0.187 0.813 43 H 0.079 0.921 44 H 0.125 0.875 45 H 0.369 0.631 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.442 -4.566 20.712 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.040 0.960 4 C -0.008 4.008 5 N -0.325 5.325 6 C -0.085 4.085 7 C 0.313 3.687 8 O -0.451 6.451 9 C -0.127 4.127 10 H 0.180 0.820 11 C -0.178 4.178 12 C 0.301 3.699 13 O -0.436 6.436 14 N -0.255 5.255 15 C -0.116 4.116 16 C -0.140 4.140 17 N -0.120 5.120 18 N -0.176 5.176 19 H 0.305 0.695 20 C -0.111 4.111 21 C -0.002 4.002 22 N -0.382 5.382 23 C -0.351 4.351 24 H 0.057 0.943 25 C -0.259 4.259 26 N -0.643 5.643 27 Si 0.775 3.225 28 H -0.213 1.213 29 H -0.235 1.235 30 H -0.137 1.137 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.065 0.935 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.152 0.848 40 H 0.108 0.892 41 H 0.231 0.769 42 H 0.204 0.796 43 H 0.098 0.902 44 H 0.143 0.857 45 H 0.204 0.796 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.374 -3.082 21.033 24.109 hybrid contribution -0.157 -0.816 -1.964 2.132 sum 11.217 -3.898 19.070 22.465 Atomic orbital electron populations 1.22218 0.96812 1.01951 1.00599 1.20766 0.93204 0.94970 0.86383 0.96044 1.21857 0.79115 1.02538 0.97309 1.47646 1.06664 1.21715 1.56521 1.22389 1.00479 0.87427 0.98160 1.20335 0.89197 0.81786 0.77430 1.90685 1.75469 1.32035 1.46951 1.22221 0.91627 1.01971 0.96870 0.81951 1.22366 0.94364 1.03754 0.97314 1.21218 0.88151 0.80063 0.80512 1.90650 1.45571 1.67025 1.40397 1.45251 1.18177 1.41070 1.21045 1.17875 0.91644 1.03259 0.98785 1.24093 0.96478 0.95234 0.98185 1.77228 1.08508 1.23316 1.02944 1.46166 1.19938 1.36011 1.15510 0.69472 1.22596 0.92316 0.96493 0.99709 1.22168 0.84400 0.97417 0.96195 1.42558 1.79925 1.09433 1.06285 1.18869 1.34841 0.93763 0.87626 0.94286 1.25550 1.02447 1.03043 0.94871 1.69932 1.55000 1.38016 1.01374 0.85583 0.77270 0.79925 0.79696 1.21349 1.23471 1.13743 0.91719 0.95419 0.91214 0.88873 0.87702 0.93499 0.87695 0.88967 0.84811 0.89181 0.76885 0.79646 0.90232 0.85738 0.79638 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.90 9.49 71.98 0.68 -4.21 16 2 C 0.16 5.45 3.20 44.99 0.14 5.60 16 3 H 0.02 0.91 8.08 -2.39 -0.02 0.89 16 4 C 0.12 2.88 5.07 86.38 0.44 3.32 16 5 N -0.60 -14.11 2.73 -846.75 -2.31 -16.42 16 6 C 0.06 1.09 7.74 127.77 0.99 2.08 16 7 C 0.52 13.02 6.99 87.66 0.61 13.64 16 8 O -0.57 -17.99 15.15 -3.03 -0.05 -18.04 16 9 C -0.11 -1.90 2.57 -10.48 -0.03 -1.93 16 10 H 0.16 1.52 7.56 -2.39 -0.02 1.50 16 11 C -0.14 -3.29 5.05 30.59 0.15 -3.13 16 12 C 0.51 14.38 7.98 87.90 0.70 15.08 16 13 O -0.56 -19.40 15.64 -3.13 -0.05 -19.45 16 14 N -0.53 -12.39 3.16 -628.36 -1.99 -14.37 16 15 C -0.01 -0.30 6.80 37.62 0.26 -0.05 16 16 C 0.05 0.94 11.53 85.33 0.98 1.93 16 17 N -0.30 -6.32 12.69 -56.77 -0.72 -7.04 16 18 N -0.46 -8.55 7.40 -56.82 -0.42 -8.97 16 19 H 0.46 5.31 8.96 -213.33 -1.91 3.39 16 20 C 0.04 0.86 11.18 83.50 0.93 1.80 16 21 C 0.12 2.23 6.24 86.83 0.54 2.77 16 22 N -0.74 -30.69 4.20 -322.94 -1.36 -32.05 16 23 C -0.22 -12.07 10.41 84.03 0.87 -11.19 16 24 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 25 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 26 N -0.99 -63.76 13.97 21.65 0.30 -63.45 16 27 Si 0.95 41.84 27.74 68.60 1.90 43.74 16 28 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 29 H -0.31 -14.35 7.11 99.48 0.71 -13.64 16 30 H -0.21 -7.31 5.03 99.48 0.50 -6.81 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.09 2.26 7.42 -2.39 -0.02 2.24 16 35 H 0.10 2.01 7.89 -2.38 -0.02 2.00 16 36 H 0.05 1.21 5.69 -2.38 -0.01 1.19 16 37 H 0.10 1.18 5.96 -2.39 -0.01 1.16 16 38 H 0.09 1.37 7.89 -2.39 -0.02 1.35 16 39 H 0.13 2.60 7.10 -2.39 -0.02 2.59 16 40 H 0.09 2.85 7.89 -2.39 -0.02 2.83 16 41 H 0.21 2.74 8.06 -2.91 -0.02 2.72 16 42 H 0.19 4.42 6.51 -2.91 -0.02 4.41 16 43 H 0.08 1.84 7.06 -2.39 -0.02 1.82 16 44 H 0.12 1.46 8.13 -2.38 -0.02 1.44 16 45 H 0.37 13.82 4.15 -92.71 -0.39 13.43 16 46 H 0.25 15.66 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -82.93 370.80 1.60 -81.33 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: -1.47 Total: 32.48 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 7.75 Total: 22.24 kcal Atomic # 7 Polarization: -135.82 SS G_CDS: -6.49 Total: -142.31 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.09 Total: -37.49 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.90 Total: 43.74 kcal Total: -82.93 1.60 -81.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485875433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.432 kcal (2) G-P(sol) polarization free energy of solvation -82.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds