Wall clock time and date at job start Tue Mar 31 2020 18:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47005 * 2 1 4 4 C 1.53002 * 109.47232 * 120.00809 * 2 1 3 5 5 N 1.46895 * 109.47201 * 174.99705 * 4 2 1 6 6 C 1.46897 * 110.99894 * 179.97438 * 5 4 2 7 7 C 1.50708 * 109.46907 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99925 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99554 * 180.02562 * 7 6 5 10 10 C 1.37096 * 119.99489 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00120 * 0.02562 * 10 9 7 12 12 C 1.38958 * 119.99715 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99786 * 0.02562 * 12 10 9 14 14 Si 1.86790 * 119.99896 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47376 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47315 * 119.99903 * 14 12 10 17 17 H 1.48497 * 109.47107 * 240.00203 * 14 12 10 18 18 N 1.46507 * 109.46675 * 240.00698 * 2 1 3 19 19 C 1.34771 * 120.00096 * 85.00685 * 18 2 1 20 20 O 1.21571 * 120.00273 * 359.97438 * 19 18 2 21 21 C 1.47712 * 119.99886 * 179.97438 * 19 18 2 22 22 N 1.31849 * 126.57400 * 359.67783 * 21 19 18 23 23 N 1.28450 * 110.05994 * 180.26746 * 22 21 19 24 24 H 0.97000 * 124.88638 * 180.02562 * 23 22 21 25 25 C 1.35254 * 110.23479 * 0.02562 * 23 22 21 26 26 C 1.35046 * 107.07702 * 359.97438 * 25 23 22 27 27 C 1.50940 * 110.53176 * 180.02562 * 26 25 23 28 28 C 1.54518 * 104.96817 * 16.76942 * 27 26 25 29 29 C 1.51234 * 142.77296 * 179.97438 * 25 23 22 30 30 H 1.08994 * 109.46667 * 299.99925 * 1 2 3 31 31 H 1.09009 * 109.46998 * 59.99349 * 1 2 3 32 32 H 1.08997 * 109.47016 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46592 * 294.99855 * 4 2 1 34 34 H 1.09005 * 109.46912 * 54.99381 * 4 2 1 35 35 H 1.00901 * 111.00097 * 303.95696 * 5 4 2 36 36 H 1.08998 * 109.46966 * 299.99816 * 6 5 4 37 37 H 1.09001 * 109.46962 * 60.00175 * 6 5 4 38 38 H 0.97002 * 119.99859 * 359.97438 * 9 7 6 39 39 H 0.96997 * 119.99584 * 179.97438 * 13 12 10 40 40 H 0.97002 * 119.99349 * 264.99519 * 18 2 1 41 41 H 1.09005 * 110.34322 * 135.64155 * 27 26 25 42 42 H 1.09004 * 110.34309 * 257.79418 * 27 26 25 43 43 H 1.08998 * 110.92701 * 92.68533 * 28 27 26 44 44 H 1.08991 * 110.93150 * 216.31681 * 28 27 26 45 45 H 1.09006 * 110.32860 * 44.29580 * 29 25 23 46 46 H 1.09002 * 110.32612 * 282.08663 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5040 -0.8269 1.1903 6 6 4.0304 -1.5152 2.3765 7 6 5.5318 -1.6037 2.2810 8 8 6.1068 -1.1387 1.3195 9 7 6.2355 -2.1996 3.2639 10 6 7.6013 -2.2806 3.1768 11 1 8.1133 -1.8666 2.3207 12 6 8.3270 -2.8945 4.1904 13 7 7.7040 -3.3979 5.2322 14 14 10.1879 -3.0043 4.0721 15 1 10.6421 -2.3671 2.8098 16 1 10.7997 -2.3029 5.2292 17 1 10.6013 -4.4305 4.0826 18 7 2.0183 -0.6905 -1.1963 19 6 2.1471 -0.0180 -2.3572 20 8 1.8577 1.1615 -2.4118 21 6 2.6399 -0.7141 -3.5632 22 7 2.9947 -1.9811 -3.6492 23 7 3.3789 -2.2508 -4.8448 24 1 3.6855 -3.1204 -5.1461 25 6 3.2944 -1.1481 -5.6233 26 6 2.8278 -0.1479 -4.8450 27 6 2.7020 1.1280 -5.6415 28 6 2.7475 0.6817 -7.1201 29 6 3.5322 -0.6459 -7.0299 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7517 -0.1585 2.1369 34 1 1.6053 -1.7200 1.2950 35 1 3.7995 -1.2884 0.3431 36 1 3.7559 -0.9575 3.2718 37 1 3.6095 -2.5192 2.4305 38 1 5.7756 -2.5712 4.0329 39 1 8.2105 -3.8267 5.9396 40 1 2.2490 -1.6317 -1.1528 41 1 1.7536 1.6191 -5.4230 42 1 3.5340 1.7965 -5.4201 43 1 1.7425 0.5142 -7.5074 44 1 3.2817 1.4098 -7.7303 45 1 3.1495 -1.3619 -7.7574 46 1 4.5953 -0.4695 -7.1943 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498064691.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:31 Heat of formation + Delta-G solvation = -21.539880 kcal Electronic energy + Delta-G solvation = -28177.701683 eV Core-core repulsion = 24102.606661 eV Total energy + Delta-G solvation = -4075.095022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.91637 -40.74419 -40.11924 -37.89303 -37.70691 -36.05168 -35.10635 -33.35933 -33.22559 -31.70343 -29.74471 -28.99506 -28.48616 -26.74509 -25.53803 -24.54926 -22.65562 -21.99551 -21.29293 -21.07239 -20.95787 -19.92890 -18.57136 -18.33578 -17.70031 -17.31818 -17.15398 -16.86740 -16.38696 -16.15420 -15.89278 -15.47741 -15.44799 -15.17717 -15.01203 -14.41668 -14.34934 -14.06038 -13.78615 -13.66326 -13.57952 -13.37715 -13.11598 -13.04163 -12.85179 -12.80774 -12.69435 -12.42671 -12.13579 -12.06256 -12.03850 -11.96187 -11.71975 -11.53650 -11.24465 -10.49442 -10.38415 -10.09434 -10.03342 -9.62970 -9.34975 -8.48724 -5.97345 0.44526 1.05198 1.34743 1.39968 1.54276 1.68206 2.03158 2.11668 2.27600 2.31770 2.87155 3.18410 3.19812 3.47753 3.57046 3.69784 3.82934 4.09745 4.18395 4.21198 4.24840 4.26526 4.35995 4.48602 4.57331 4.67015 4.68236 4.72862 4.77844 4.80167 4.83101 4.97646 5.05131 5.09269 5.16397 5.26645 5.36283 5.38556 5.39109 5.46361 5.85228 6.07016 6.08485 6.30962 6.38956 6.58559 6.79895 7.10971 7.12445 7.54201 8.10292 8.68887 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012145 B = 0.002419 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.005983 B =11572.559504 C =13271.646326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 H 0.072 0.928 4 C 0.056 3.944 5 N -0.688 5.688 6 C 0.065 3.935 7 C 0.435 3.565 8 O -0.626 6.626 9 N -0.572 5.572 10 C -0.334 4.334 11 H 0.075 0.925 12 C -0.013 4.013 13 N -0.919 5.919 14 Si 0.993 3.007 15 H -0.275 1.275 16 H -0.270 1.270 17 H -0.269 1.269 18 N -0.703 5.703 19 C 0.602 3.398 20 O -0.565 6.565 21 C -0.025 4.025 22 N -0.264 5.264 23 N -0.349 5.349 24 H 0.460 0.540 25 C -0.007 4.007 26 C -0.199 4.199 27 C -0.053 4.053 28 C -0.104 4.104 29 C -0.032 4.032 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.340 0.660 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.398 0.602 39 H 0.278 0.722 40 H 0.408 0.592 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.900 0.786 -21.299 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.090 0.910 4 C -0.072 4.072 5 N -0.321 5.321 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.513 6.513 9 N -0.209 5.209 10 C -0.463 4.463 11 H 0.093 0.907 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.816 3.184 15 H -0.200 1.200 16 H -0.195 1.195 17 H -0.194 1.194 18 N -0.354 5.354 19 C 0.387 3.613 20 O -0.442 6.442 21 C -0.183 4.183 22 N -0.101 5.101 23 N -0.064 5.064 24 H 0.308 0.692 25 C -0.135 4.135 26 C -0.209 4.209 27 C -0.091 4.091 28 C -0.142 4.142 29 C -0.071 4.071 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.159 0.841 36 H 0.127 0.873 37 H 0.090 0.910 38 H 0.232 0.768 39 H 0.088 0.912 40 H 0.243 0.757 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.490 1.511 -20.826 25.999 hybrid contribution 0.837 -1.409 0.197 1.651 sum -14.653 0.102 -20.629 25.304 Atomic orbital electron populations 1.22065 0.92722 1.03165 1.02999 1.21123 0.95096 0.97040 0.82758 0.91010 1.22385 0.86106 1.00597 0.98153 1.59999 1.10380 1.57605 1.04159 1.21566 0.90152 0.99179 0.95796 1.20960 0.90785 0.82179 0.83812 1.90505 1.72900 1.52804 1.35078 1.41922 1.06853 1.51563 1.20596 1.19669 0.83098 1.36880 1.06673 0.90653 1.26036 1.04917 0.95806 0.94489 1.69673 1.38206 1.38446 1.09645 0.84879 0.76880 0.78378 0.78242 1.20023 1.19510 1.19372 1.45863 1.66134 1.14316 1.09093 1.17108 0.76650 0.85380 0.82155 1.90734 1.52176 1.16137 1.85166 1.21408 1.10030 0.91496 0.95415 1.73625 1.16825 1.16373 1.03235 1.42689 1.46854 1.12288 1.04602 0.69213 1.22823 1.04198 0.86827 0.99668 1.21338 1.07553 0.99777 0.92202 1.20519 1.02273 0.92319 0.93986 1.22462 1.01758 0.95968 0.94034 1.20853 1.02829 0.97185 0.86237 0.89264 0.93423 0.90990 0.87602 0.92391 0.84103 0.87269 0.90997 0.76841 0.91241 0.75669 0.91630 0.90940 0.89551 0.87428 0.87474 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.48 71.98 0.68 -2.19 16 2 C 0.14 3.56 2.88 44.99 0.13 3.69 16 3 H 0.07 2.19 7.58 -2.39 -0.02 2.18 16 4 C 0.06 1.30 5.30 86.30 0.46 1.75 16 5 N -0.69 -22.76 6.11 -517.93 -3.17 -25.92 16 6 C 0.07 2.26 6.17 85.56 0.53 2.78 16 7 C 0.44 21.33 7.82 87.66 0.69 22.02 16 8 O -0.63 -36.35 15.78 -3.06 -0.05 -36.39 16 9 N -0.57 -29.89 5.29 -306.97 -1.62 -31.51 16 10 C -0.33 -19.35 9.68 84.04 0.81 -18.53 16 11 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 12 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 13 N -0.92 -49.86 13.05 21.67 0.28 -49.58 16 14 Si 0.99 43.54 29.55 68.60 2.03 45.57 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 18 N -0.70 -19.10 4.35 -445.52 -1.94 -21.04 16 19 C 0.60 19.46 7.79 86.75 0.68 20.14 16 20 O -0.56 -21.28 16.59 -3.94 -0.07 -21.35 16 21 C -0.02 -0.73 7.14 42.42 0.30 -0.42 16 22 N -0.26 -6.78 11.93 -48.23 -0.58 -7.36 16 23 N -0.35 -6.42 6.84 -47.57 -0.33 -6.75 16 24 H 0.46 4.73 8.96 -220.00 -1.97 2.76 16 25 C -0.01 -0.13 8.12 41.47 0.34 0.20 16 26 C -0.20 -4.98 6.82 -19.75 -0.13 -5.12 16 27 C -0.05 -1.03 6.78 30.44 0.21 -0.83 16 28 C -0.10 -1.02 7.13 31.61 0.23 -0.79 16 29 C -0.03 -0.29 6.78 30.52 0.21 -0.08 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.34 12.21 7.28 -89.69 -0.65 11.56 16 36 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 39 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 40 H 0.41 10.16 7.88 -92.71 -0.73 9.43 16 41 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.11 0.41 8.14 -2.38 -0.02 0.40 16 46 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -81.81 389.12 -2.88 -84.69 By element: Atomic # 1 Polarization: 50.27 SS G_CDS: -3.03 Total: 47.24 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 5.58 Total: 22.40 kcal Atomic # 7 Polarization: -134.81 SS G_CDS: -7.35 Total: -142.15 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -0.11 Total: -57.74 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -81.81 -2.88 -84.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498064691.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.148 kcal (2) G-P(sol) polarization free energy of solvation -81.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds