Wall clock time and date at job start Tue Mar 31 2020 20:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47071 * 2 1 4 4 C 1.36939 * 120.00008 * 263.64014 * 3 2 1 5 5 H 1.07999 * 120.00049 * 198.97643 * 4 3 2 6 6 C 1.38813 * 120.00085 * 18.98117 * 4 3 2 7 7 N 1.31623 * 119.99954 * 21.76648 * 6 4 3 8 8 Si 1.86803 * 120.00234 * 201.76957 * 6 4 3 9 9 H 1.48502 * 109.47180 * 59.99687 * 8 6 4 10 10 H 1.48500 * 109.47239 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46682 * 299.99849 * 8 6 4 12 12 C 1.46496 * 119.99937 * 83.64102 * 3 2 1 13 13 C 1.53005 * 109.46976 * 85.62005 * 12 3 2 14 14 C 1.53038 * 109.45791 * 162.96526 * 13 12 3 15 15 C 1.53193 * 109.31123 * 178.62649 * 14 13 12 16 16 N 1.46920 * 108.77792 * 54.63462 * 15 14 13 17 17 C 1.34780 * 120.63314 * 126.36728 * 16 15 14 18 18 O 1.21536 * 119.99402 * 1.70923 * 17 16 15 19 19 C 1.48001 * 120.00003 * 181.42926 * 17 16 15 20 20 N 1.32805 * 119.75064 * 324.76382 * 19 17 16 21 21 C 1.31434 * 121.66260 * 179.97438 * 20 19 17 22 22 C 1.38678 * 120.98370 * 0.02722 * 21 20 19 23 23 C 1.38450 * 119.39332 * 359.97220 * 22 21 20 24 24 C 1.38974 * 118.46774 * 359.75595 * 23 22 21 25 25 F 1.35094 * 120.50425 * 180.26104 * 24 23 22 26 26 C 1.46928 * 118.73973 * 306.64836 * 16 15 14 27 27 C 1.52758 * 109.00857 * 53.30189 * 26 16 15 28 28 H 1.09008 * 109.47002 * 178.66599 * 1 2 3 29 29 H 1.09004 * 109.47129 * 298.66118 * 1 2 3 30 30 H 1.08995 * 109.47573 * 58.66785 * 1 2 3 31 31 H 1.09012 * 109.47141 * 240.00122 * 2 1 3 32 32 H 1.08995 * 109.47684 * 120.00192 * 2 1 3 33 33 H 0.97001 * 120.00001 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47505 * 325.61852 * 12 3 2 35 35 H 1.09003 * 109.47173 * 205.61247 * 12 3 2 36 36 H 1.09000 * 109.45624 * 282.93854 * 13 12 3 37 37 H 1.09006 * 109.49894 * 58.67613 * 14 13 12 38 38 H 1.08998 * 109.52786 * 298.59538 * 14 13 12 39 39 H 1.09006 * 109.58622 * 294.84478 * 15 14 13 40 40 H 1.08998 * 109.70631 * 174.49567 * 15 14 13 41 41 H 1.08003 * 119.50435 * 180.02562 * 21 20 19 42 42 H 1.08000 * 120.30772 * 180.02562 * 22 21 20 43 43 H 1.08004 * 120.76724 * 180.02562 * 23 22 21 44 44 H 1.08995 * 109.58900 * 173.14159 * 26 16 15 45 45 H 1.09004 * 109.58510 * 293.56772 * 26 16 15 46 46 H 1.09006 * 109.56331 * 185.55687 * 27 26 16 47 47 H 1.08997 * 109.36071 * 65.50548 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3703 1.9830 -1.1786 5 1 3.0033 2.8580 -1.1702 6 6 1.9136 1.4683 -2.3842 7 7 0.8397 0.7078 -2.4105 8 14 2.8232 1.8551 -3.9694 9 1 4.2192 1.3580 -3.8729 10 1 2.1390 1.1903 -5.1075 11 1 2.8347 3.3239 -4.1876 12 6 2.1299 2.1186 1.2609 13 6 3.4790 1.8109 1.9139 14 6 3.7839 2.8688 2.9769 15 6 5.1187 2.5384 3.6522 16 7 6.1529 2.4077 2.6169 17 6 7.2932 3.1224 2.6912 18 8 7.4870 3.8606 3.6371 19 6 8.3118 3.0037 1.6242 20 7 8.5100 1.8328 1.0296 21 6 9.4040 1.6850 0.0776 22 6 10.1805 2.7536 -0.3448 23 6 10.0089 3.9937 0.2464 24 6 9.0529 4.1243 1.2466 25 9 8.8476 5.3166 1.8476 26 6 5.9179 1.4878 1.4956 27 6 4.5765 1.8258 0.8475 28 1 -0.3633 -1.0275 -0.0239 29 1 -0.3633 0.4929 0.9018 30 1 -0.3634 0.5343 -0.8777 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 0.5207 0.3479 -3.2529 34 1 1.3248 1.8170 1.9308 35 1 2.0572 3.1883 1.0639 36 1 3.4401 0.8270 2.3813 37 1 2.9898 2.8737 3.7237 38 1 3.8471 3.8501 2.5068 39 1 5.0289 1.5999 4.1995 40 1 5.3901 3.3384 4.3410 41 1 9.5360 0.7168 -0.3825 42 1 10.9117 2.6199 -1.1282 43 1 10.6013 4.8412 -0.0656 44 1 6.7151 1.5965 0.7604 45 1 5.8945 0.4619 1.8634 46 1 4.3466 1.0883 0.0784 47 1 4.6325 2.8167 0.3968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505399612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:32 Heat of formation + Delta-G solvation = -3.215857 kcal Electronic energy + Delta-G solvation = -30044.352656 eV Core-core repulsion = 25950.132262 eV Total energy + Delta-G solvation = -4094.220395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.18368 -40.88876 -39.39712 -37.68074 -35.77891 -33.51388 -32.68433 -31.51418 -30.83019 -30.59990 -29.05538 -26.91332 -25.18805 -23.96332 -23.60776 -22.80406 -22.38959 -20.99637 -19.94533 -19.02834 -17.94873 -17.72158 -17.23498 -16.57345 -16.41759 -15.87363 -15.53109 -15.00481 -14.92078 -14.31328 -14.22314 -13.97178 -13.77282 -13.66082 -13.61148 -13.34380 -13.27641 -12.82764 -12.75629 -12.67290 -12.01539 -11.73096 -11.69004 -11.21104 -10.94121 -10.92142 -10.77263 -10.55474 -10.45708 -10.33848 -10.29240 -10.17898 -9.99469 -9.83069 -9.58537 -9.37423 -9.32612 -9.14137 -8.47945 -8.40059 -6.71084 -5.68548 -3.12430 0.27111 0.65364 2.52245 2.86787 3.32240 3.37385 3.44374 3.44874 3.66946 3.95954 4.27531 4.32037 4.47048 4.50267 4.87421 5.12512 5.17403 5.23114 5.33504 5.37612 5.40362 5.51479 5.53130 5.55897 5.74978 5.85008 5.87591 6.03549 6.16420 6.17606 6.27083 6.39507 6.46151 6.58062 6.63318 6.69486 6.79432 6.94323 7.05179 7.09273 7.15956 7.25627 7.27456 7.45298 7.63833 7.76843 8.08544 8.26905 8.44451 9.31647 9.90392 10.39299 11.29818 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.012108 B = 0.003857 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.035229 B = 7258.441953 C = 8742.395590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.179 3.821 3 N -0.594 5.594 4 C -0.243 4.243 5 H 0.068 0.932 6 C -0.001 4.001 7 N -0.896 5.896 8 Si 0.894 3.106 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.286 1.286 12 C 0.155 3.845 13 C -0.107 4.107 14 C -0.127 4.127 15 C 0.113 3.887 16 N -0.582 5.582 17 C 0.569 3.431 18 O -0.534 6.534 19 C 0.057 3.943 20 N -0.422 5.422 21 C 0.085 3.915 22 C -0.122 4.122 23 C -0.116 4.116 24 C 0.103 3.897 25 F -0.111 7.111 26 C 0.095 3.905 27 C -0.115 4.115 28 H 0.014 0.986 29 H 0.006 0.994 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.002 0.998 33 H 0.251 0.749 34 H 0.032 0.968 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.173 0.827 42 H 0.151 0.849 43 H 0.154 0.846 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.101 0.899 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.303 1.444 5.907 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.054 3.946 3 N -0.315 5.315 4 C -0.373 4.373 5 H 0.086 0.914 6 C -0.198 4.198 7 N -0.542 5.542 8 Si 0.724 3.276 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.213 1.213 12 C 0.027 3.973 13 C -0.128 4.128 14 C -0.165 4.165 15 C -0.009 4.009 16 N -0.313 5.313 17 C 0.354 3.646 18 O -0.411 6.411 19 C -0.082 4.082 20 N -0.133 5.133 21 C -0.074 4.074 22 C -0.142 4.142 23 C -0.143 4.143 24 C 0.080 3.920 25 F -0.090 7.090 26 C -0.027 4.027 27 C -0.153 4.153 28 H 0.033 0.967 29 H 0.025 0.975 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.020 0.980 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.190 0.810 42 H 0.169 0.831 43 H 0.172 0.828 44 H 0.121 0.879 45 H 0.085 0.915 46 H 0.119 0.881 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.755 1.093 6.575 17.107 hybrid contribution 0.837 1.000 -1.174 1.754 sum 16.592 2.092 5.401 17.574 Atomic orbital electron populations 1.22620 0.99183 0.98407 1.02087 1.20427 0.92702 0.84575 0.96943 1.44083 1.75894 1.09989 1.01548 1.19161 1.23328 1.11252 0.83515 0.91422 1.24828 0.96559 1.00965 0.97485 1.69987 1.20865 1.38630 1.24698 0.86486 0.79710 0.77681 0.83707 1.21296 1.21799 1.21262 1.20745 0.92521 0.95760 0.88255 1.21803 0.98494 0.97492 0.95060 1.21948 0.95536 1.00143 0.98894 1.21687 0.87104 1.02246 0.89865 1.48020 1.16493 1.41354 1.25449 1.17683 0.81690 0.80438 0.84750 1.90804 1.78166 1.39300 1.32869 1.21364 0.98644 0.89489 0.98715 1.67897 1.15675 1.22466 1.07247 1.23045 0.91041 0.99942 0.93410 1.22302 0.99890 0.92291 0.99761 1.21706 0.97369 0.99979 0.95231 1.18607 0.97029 0.82000 0.94324 1.91601 1.93584 1.42221 1.81547 1.22367 0.99986 0.92127 0.88238 1.21850 0.91556 1.03361 0.98520 0.96686 0.97474 0.86987 0.91578 0.97959 0.93869 0.94946 0.93600 0.92304 0.91032 0.91774 0.91391 0.89418 0.81000 0.83114 0.82798 0.87890 0.91492 0.88065 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 9.70 37.15 0.36 -3.42 16 2 C 0.18 4.14 5.61 -4.04 -0.02 4.12 16 3 N -0.59 -13.78 1.72 -173.24 -0.30 -14.08 16 4 C -0.24 -6.19 7.89 -15.06 -0.12 -6.31 16 5 H 0.07 1.72 7.36 -52.49 -0.39 1.34 16 6 C 0.00 -0.03 4.84 -17.43 -0.08 -0.11 16 7 N -0.90 -24.38 8.45 55.49 0.47 -23.91 16 8 Si 0.89 20.91 29.61 -169.99 -5.03 15.88 16 9 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.15 3.04 5.50 -4.04 -0.02 3.02 16 13 C -0.11 -1.77 2.53 -90.58 -0.23 -2.00 16 14 C -0.13 -1.81 5.29 -26.61 -0.14 -1.95 16 15 C 0.11 1.58 6.43 -3.71 -0.02 1.55 16 16 N -0.58 -8.89 2.98 -174.09 -0.52 -9.41 16 17 C 0.57 9.32 7.39 -12.26 -0.09 9.23 16 18 O -0.53 -10.00 15.50 5.33 0.08 -9.92 16 19 C 0.06 0.80 6.10 -82.95 -0.51 0.30 16 20 N -0.42 -5.20 7.07 -9.76 -0.07 -5.27 16 21 C 0.09 0.74 11.18 -17.56 -0.20 0.54 16 22 C -0.12 -0.85 10.11 -39.34 -0.40 -1.25 16 23 C -0.12 -1.01 10.16 -39.23 -0.40 -1.41 16 24 C 0.10 1.31 7.27 -38.82 -0.28 1.03 16 25 F -0.11 -1.61 16.13 2.25 0.04 -1.57 16 26 C 0.09 1.41 5.94 -3.93 -0.02 1.39 16 27 C -0.11 -1.97 4.21 -26.84 -0.11 -2.09 16 28 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 29 H 0.01 0.14 8.06 -51.93 -0.42 -0.28 16 30 H 0.11 2.95 5.54 -51.93 -0.29 2.66 16 31 H 0.07 1.69 6.52 -51.92 -0.34 1.35 16 32 H 0.00 0.05 8.12 -51.93 -0.42 -0.37 16 33 H 0.25 6.73 8.31 -40.82 -0.34 6.40 16 34 H 0.03 0.62 8.03 -51.93 -0.42 0.21 16 35 H 0.05 0.93 7.89 -51.93 -0.41 0.52 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.26 7.01 -51.93 -0.36 0.89 16 41 H 0.17 0.96 8.06 -52.48 -0.42 0.53 16 42 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.15 0.90 8.06 -52.48 -0.42 0.47 16 44 H 0.10 1.52 4.51 -51.93 -0.23 1.28 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.10 2.01 6.54 -51.93 -0.34 1.67 16 47 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 LS Contribution 371.58 15.07 5.60 5.60 Total: -1.00 -30.30 371.58 -8.98 -39.28 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.96 Total: 0.76 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -2.29 Total: 2.64 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.42 Total: -52.67 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.30 -8.98 -39.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505399612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.062 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds