Wall clock time and date at job start Tue Mar 31 2020 20:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47071 * 2 1 4 4 C 1.36939 * 120.00008 * 263.64014 * 3 2 1 5 5 H 1.07999 * 120.00049 * 198.97643 * 4 3 2 6 6 C 1.38813 * 120.00085 * 18.98117 * 4 3 2 7 7 N 1.31623 * 119.99954 * 21.76648 * 6 4 3 8 8 Si 1.86803 * 120.00234 * 201.76957 * 6 4 3 9 9 H 1.48502 * 109.47180 * 59.99687 * 8 6 4 10 10 H 1.48500 * 109.47239 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46682 * 299.99849 * 8 6 4 12 12 C 1.46496 * 119.99937 * 83.64102 * 3 2 1 13 13 C 1.53005 * 109.46976 * 85.62005 * 12 3 2 14 14 C 1.53038 * 109.45791 * 162.96526 * 13 12 3 15 15 C 1.53193 * 109.31123 * 178.62649 * 14 13 12 16 16 N 1.46920 * 108.77792 * 54.63462 * 15 14 13 17 17 C 1.34780 * 120.63314 * 126.36728 * 16 15 14 18 18 O 1.21536 * 119.99402 * 1.70923 * 17 16 15 19 19 C 1.48001 * 120.00003 * 181.42926 * 17 16 15 20 20 N 1.32805 * 119.75064 * 324.76382 * 19 17 16 21 21 C 1.31434 * 121.66260 * 179.97438 * 20 19 17 22 22 C 1.38678 * 120.98370 * 0.02722 * 21 20 19 23 23 C 1.38450 * 119.39332 * 359.97220 * 22 21 20 24 24 C 1.38974 * 118.46774 * 359.75595 * 23 22 21 25 25 F 1.35094 * 120.50425 * 180.26104 * 24 23 22 26 26 C 1.46928 * 118.73973 * 306.64836 * 16 15 14 27 27 C 1.52758 * 109.00857 * 53.30189 * 26 16 15 28 28 H 1.09008 * 109.47002 * 178.66599 * 1 2 3 29 29 H 1.09004 * 109.47129 * 298.66118 * 1 2 3 30 30 H 1.08995 * 109.47573 * 58.66785 * 1 2 3 31 31 H 1.09012 * 109.47141 * 240.00122 * 2 1 3 32 32 H 1.08995 * 109.47684 * 120.00192 * 2 1 3 33 33 H 0.97001 * 120.00001 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47505 * 325.61852 * 12 3 2 35 35 H 1.09003 * 109.47173 * 205.61247 * 12 3 2 36 36 H 1.09000 * 109.45624 * 282.93854 * 13 12 3 37 37 H 1.09006 * 109.49894 * 58.67613 * 14 13 12 38 38 H 1.08998 * 109.52786 * 298.59538 * 14 13 12 39 39 H 1.09006 * 109.58622 * 294.84478 * 15 14 13 40 40 H 1.08998 * 109.70631 * 174.49567 * 15 14 13 41 41 H 1.08003 * 119.50435 * 180.02562 * 21 20 19 42 42 H 1.08000 * 120.30772 * 180.02562 * 22 21 20 43 43 H 1.08004 * 120.76724 * 180.02562 * 23 22 21 44 44 H 1.08995 * 109.58900 * 173.14159 * 26 16 15 45 45 H 1.09004 * 109.58510 * 293.56772 * 26 16 15 46 46 H 1.09006 * 109.56331 * 185.55687 * 27 26 16 47 47 H 1.08997 * 109.36071 * 65.50548 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3703 1.9830 -1.1786 5 1 3.0033 2.8580 -1.1702 6 6 1.9136 1.4683 -2.3842 7 7 0.8397 0.7078 -2.4105 8 14 2.8232 1.8551 -3.9694 9 1 4.2192 1.3580 -3.8729 10 1 2.1390 1.1903 -5.1075 11 1 2.8347 3.3239 -4.1876 12 6 2.1299 2.1186 1.2609 13 6 3.4790 1.8109 1.9139 14 6 3.7839 2.8688 2.9769 15 6 5.1187 2.5384 3.6522 16 7 6.1529 2.4077 2.6169 17 6 7.2932 3.1224 2.6912 18 8 7.4870 3.8606 3.6371 19 6 8.3118 3.0037 1.6242 20 7 8.5100 1.8328 1.0296 21 6 9.4040 1.6850 0.0776 22 6 10.1805 2.7536 -0.3448 23 6 10.0089 3.9937 0.2464 24 6 9.0529 4.1243 1.2466 25 9 8.8476 5.3166 1.8476 26 6 5.9179 1.4878 1.4956 27 6 4.5765 1.8258 0.8475 28 1 -0.3633 -1.0275 -0.0239 29 1 -0.3633 0.4929 0.9018 30 1 -0.3634 0.5343 -0.8777 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 0.5207 0.3479 -3.2529 34 1 1.3248 1.8170 1.9308 35 1 2.0572 3.1883 1.0639 36 1 3.4401 0.8270 2.3813 37 1 2.9898 2.8737 3.7237 38 1 3.8471 3.8501 2.5068 39 1 5.0289 1.5999 4.1995 40 1 5.3901 3.3384 4.3410 41 1 9.5360 0.7168 -0.3825 42 1 10.9117 2.6199 -1.1282 43 1 10.6013 4.8412 -0.0656 44 1 6.7151 1.5965 0.7604 45 1 5.8945 0.4619 1.8634 46 1 4.3466 1.0883 0.0784 47 1 4.6325 2.8167 0.3968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505399612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:31 Heat of formation + Delta-G solvation = -18.909647 kcal Electronic energy + Delta-G solvation = -30045.033190 eV Core-core repulsion = 25950.132262 eV Total energy + Delta-G solvation = -4094.900928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.15274 -41.87019 -40.43007 -39.09824 -37.41483 -34.76663 -33.72940 -32.77587 -32.32465 -31.75083 -30.80134 -28.42984 -26.34102 -25.22647 -24.74507 -24.11271 -23.80994 -22.46251 -21.36703 -20.33694 -18.86997 -18.70158 -18.46719 -18.16531 -17.48433 -16.96168 -16.83091 -16.34027 -16.17174 -15.74054 -15.51650 -15.14520 -15.07811 -14.99995 -14.81946 -14.63947 -14.37017 -14.11593 -14.02353 -13.68151 -13.51583 -13.45911 -13.10318 -12.89492 -12.62758 -12.55304 -12.36980 -12.16340 -12.00718 -11.84725 -11.65996 -11.52745 -11.38876 -11.19303 -11.03029 -10.96257 -10.41000 -10.34734 -10.19130 -9.69279 -8.60451 -7.67385 -5.11729 -0.55542 -0.06381 1.44483 1.49704 1.52120 1.57636 1.80065 2.50227 2.58457 2.80855 3.03640 3.35564 3.48968 3.58263 3.68822 3.86782 3.90538 4.00922 4.14556 4.23857 4.28750 4.42506 4.51800 4.56726 4.60413 4.75212 4.78211 4.83342 4.86890 4.90474 4.95863 5.03744 5.05571 5.10951 5.13060 5.22887 5.32132 5.38564 5.44242 5.50886 5.62255 5.67115 5.71505 5.79228 6.21747 6.31349 6.49352 6.51473 6.90645 7.33810 8.00984 8.44700 9.28499 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.012108 B = 0.003857 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.035229 B = 7258.441953 C = 8742.395590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.184 3.816 3 N -0.604 5.604 4 C -0.239 4.239 5 H 0.062 0.938 6 C -0.048 4.048 7 N -0.917 5.917 8 Si 0.947 3.053 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.287 1.287 12 C 0.154 3.846 13 C -0.096 4.096 14 C -0.116 4.116 15 C 0.112 3.888 16 N -0.584 5.584 17 C 0.561 3.439 18 O -0.570 6.570 19 C 0.023 3.977 20 N -0.444 5.444 21 C 0.083 3.917 22 C -0.097 4.097 23 C -0.110 4.110 24 C 0.076 3.924 25 F -0.132 7.132 26 C 0.106 3.894 27 C -0.104 4.104 28 H 0.028 0.972 29 H 0.015 0.985 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.025 0.975 33 H 0.244 0.756 34 H 0.041 0.959 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.207 0.793 42 H 0.200 0.800 43 H 0.185 0.815 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.472 0.665 5.485 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.059 3.941 3 N -0.326 5.326 4 C -0.370 4.370 5 H 0.080 0.920 6 C -0.243 4.243 7 N -0.564 5.564 8 Si 0.777 3.223 9 H -0.206 1.206 10 H -0.225 1.225 11 H -0.214 1.214 12 C 0.028 3.972 13 C -0.117 4.117 14 C -0.155 4.155 15 C -0.009 4.009 16 N -0.315 5.315 17 C 0.348 3.652 18 O -0.450 6.450 19 C -0.113 4.113 20 N -0.156 5.156 21 C -0.077 4.077 22 C -0.117 4.117 23 C -0.136 4.136 24 C 0.053 3.947 25 F -0.110 7.110 26 C -0.016 4.016 27 C -0.142 4.142 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.223 0.777 42 H 0.217 0.783 43 H 0.202 0.798 44 H 0.126 0.874 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 17.925 0.322 6.178 18.962 hybrid contribution 0.230 1.220 -1.080 1.646 sum 18.155 1.543 5.097 18.920 Atomic orbital electron populations 1.22440 0.99107 0.98871 1.00908 1.20320 0.92670 0.84521 0.96598 1.44215 1.75962 1.10295 1.02097 1.19273 1.22405 1.10769 0.84513 0.92033 1.25406 0.97347 1.01804 0.99775 1.70168 1.21811 1.39878 1.24575 0.85640 0.78858 0.77108 0.80669 1.20567 1.22489 1.21389 1.20861 0.94512 0.94683 0.87145 1.21626 0.96257 0.98659 0.95158 1.21851 0.96600 0.98405 0.98606 1.21756 0.86403 1.03097 0.89673 1.48115 1.16608 1.41169 1.25560 1.18163 0.82290 0.79715 0.85006 1.90759 1.79071 1.40723 1.34438 1.21078 0.99556 0.90961 0.99751 1.67798 1.17457 1.21722 1.08604 1.23782 0.89867 1.02043 0.91988 1.22853 0.99082 0.90578 0.99159 1.22142 0.96008 1.01910 0.93513 1.19026 0.98609 0.81123 0.95936 1.91540 1.93961 1.43259 1.82263 1.22253 0.98614 0.92409 0.88317 1.21651 0.93302 1.01092 0.98149 0.95326 0.96596 0.90099 0.94329 0.95676 0.94651 0.94091 0.94819 0.91307 0.88751 0.93283 0.89433 0.89900 0.77657 0.78303 0.79778 0.87383 0.90381 0.90603 0.94891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.03 9.70 71.98 0.70 -6.33 16 2 C 0.18 8.46 5.61 86.38 0.48 8.94 16 3 N -0.60 -28.03 1.72 -702.01 -1.20 -29.24 16 4 C -0.24 -12.31 7.89 84.03 0.66 -11.65 16 5 H 0.06 3.19 7.36 -2.91 -0.02 3.17 16 6 C -0.05 -2.57 4.84 84.86 0.41 -2.16 16 7 N -0.92 -50.71 8.45 21.65 0.18 -50.53 16 8 Si 0.95 43.38 29.61 68.60 2.03 45.42 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 C 0.15 5.98 5.50 86.38 0.47 6.45 16 13 C -0.10 -3.08 2.53 -10.77 -0.03 -3.10 16 14 C -0.12 -3.20 5.29 30.67 0.16 -3.04 16 15 C 0.11 3.05 6.43 86.36 0.56 3.61 16 16 N -0.58 -17.79 2.98 -822.97 -2.45 -20.24 16 17 C 0.56 18.80 7.39 86.83 0.64 19.45 16 18 O -0.57 -22.16 15.50 -3.83 -0.06 -22.22 16 19 C 0.02 0.66 6.10 41.90 0.26 0.92 16 20 N -0.44 -10.33 7.07 -184.79 -1.31 -11.64 16 21 C 0.08 1.17 11.18 84.86 0.95 2.11 16 22 C -0.10 -0.93 10.11 22.43 0.23 -0.70 16 23 C -0.11 -1.59 10.16 22.50 0.23 -1.36 16 24 C 0.08 1.90 7.27 22.76 0.17 2.07 16 25 F -0.13 -3.94 16.13 44.97 0.73 -3.21 16 26 C 0.11 3.09 5.94 86.22 0.51 3.60 16 27 C -0.10 -3.56 4.21 30.53 0.13 -3.43 16 28 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.01 0.65 8.06 -2.38 -0.02 0.63 16 30 H 0.08 4.30 5.54 -2.39 -0.01 4.29 16 31 H 0.04 1.98 6.52 -2.38 -0.02 1.96 16 32 H 0.03 1.03 8.12 -2.39 -0.02 1.01 16 33 H 0.24 13.35 8.31 -92.71 -0.77 12.58 16 34 H 0.04 1.52 8.03 -2.39 -0.02 1.50 16 35 H 0.03 1.37 7.89 -2.39 -0.02 1.35 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.08 2.37 7.01 -2.39 -0.02 2.35 16 41 H 0.21 1.36 8.06 -2.91 -0.02 1.33 16 42 H 0.20 0.02 8.06 -2.91 -0.02 -0.01 16 43 H 0.18 1.46 8.06 -2.91 -0.02 1.43 16 44 H 0.11 3.12 4.51 -2.39 -0.01 3.11 16 45 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.08 3.02 6.54 -2.38 -0.02 3.00 16 47 H 0.03 1.26 7.72 -2.39 -0.02 1.24 16 Total: -1.00 -68.93 371.58 5.42 -63.51 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.97 Total: 12.78 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 6.53 Total: 15.37 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -4.78 Total: -111.64 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.06 Total: -22.22 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.73 Total: -3.21 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.42 kcal Total: -68.93 5.42 -63.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505399612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.596 kcal (2) G-P(sol) polarization free energy of solvation -68.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds