Wall clock time and date at job start Tue Mar 31 2020 19:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47425 * 2 1 4 4 C 1.35848 * 126.13198 * 89.97353 * 3 2 1 5 5 N 1.30170 * 109.00578 * 180.02562 * 4 3 2 6 6 C 1.35765 * 108.86456 * 0.02562 * 5 4 3 7 7 C 1.47321 * 126.23547 * 179.97438 * 6 5 4 8 8 O 1.21626 * 119.99767 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99870 * 0.02712 * 7 6 5 10 10 C 1.46502 * 119.99671 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.90669 * 336.24268 * 10 9 7 12 12 C 1.53778 * 113.61780 * 107.50275 * 10 9 7 13 13 C 1.53778 * 87.08449 * 139.97851 * 12 10 9 14 14 H 1.09000 * 113.61263 * 89.11673 * 13 12 10 15 15 N 1.46895 * 113.61384 * 220.01595 * 13 12 10 16 16 C 1.46894 * 111.00604 * 252.49629 * 15 13 12 17 17 C 1.50701 * 109.47623 * 180.02562 * 16 15 13 18 18 O 1.21290 * 119.99812 * 359.97438 * 17 16 15 19 19 N 1.34772 * 119.99781 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99664 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00263 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00086 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99912 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00135 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47180 * 90.00124 * 24 22 20 26 26 H 1.48509 * 109.47235 * 210.00197 * 24 22 20 27 27 H 1.48501 * 109.47102 * 329.99597 * 24 22 20 28 28 C 1.53784 * 87.08081 * 334.56700 * 13 12 10 29 29 C 1.35376 * 126.14040 * 270.32992 * 3 2 1 30 30 H 1.08996 * 109.46719 * 300.00033 * 1 2 3 31 31 H 1.09003 * 109.46706 * 59.99986 * 1 2 3 32 32 H 1.08993 * 109.47245 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47335 * 240.00348 * 2 1 3 34 34 H 1.09007 * 109.47236 * 120.00508 * 2 1 3 35 35 H 1.08006 * 125.49939 * 0.07500 * 4 3 2 36 36 H 0.97000 * 120.00419 * 359.97438 * 9 7 6 37 37 H 1.08999 * 113.61111 * 254.52914 * 12 10 9 38 38 H 1.09004 * 113.61682 * 25.42310 * 12 10 9 39 39 H 1.00901 * 111.00236 * 16.45388 * 15 13 12 40 40 H 1.09001 * 109.46755 * 300.00607 * 16 15 13 41 41 H 1.08999 * 109.46705 * 59.99931 * 16 15 13 42 42 H 0.97001 * 120.00513 * 0.02562 * 19 17 16 43 43 H 0.97001 * 119.99926 * 179.97438 * 23 22 20 44 44 H 1.09004 * 113.61451 * 270.88641 * 28 13 12 45 45 H 1.08994 * 113.61477 * 139.97943 * 28 13 12 46 46 H 1.08002 * 126.56427 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2850 2.1365 1.0972 5 7 2.6993 3.3095 0.7139 6 6 2.7128 3.3484 -0.6432 7 6 3.1166 4.4934 -1.4775 8 8 3.0842 4.4037 -2.6900 9 7 3.5220 5.6403 -0.8972 10 6 3.9230 6.7792 -1.7270 11 1 4.2467 6.4838 -2.7250 12 6 2.9048 7.9315 -1.7254 13 6 4.1069 8.8893 -1.6771 14 1 4.4806 9.1708 -2.6615 15 7 3.9046 10.0432 -0.7908 16 6 3.7077 11.2749 -1.5667 17 6 3.5045 12.4344 -0.6257 18 8 3.5216 12.2525 0.5733 19 7 3.3039 13.6734 -1.1166 20 6 3.1185 14.7281 -0.2605 21 1 3.1337 14.5662 0.8072 22 6 2.9122 16.0056 -0.7665 23 7 2.8942 16.2028 -2.0657 24 14 2.6604 17.4428 0.3999 25 1 3.9746 18.0529 0.7245 26 1 1.7894 18.4577 -0.2459 27 1 2.0166 16.9604 1.6481 28 6 4.8950 7.7415 -1.0240 29 6 2.2786 2.1360 -1.0932 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.1721 1.8154 2.1222 36 1 3.5475 5.7120 0.0698 37 1 2.3257 8.0037 -2.6460 38 1 2.2839 7.9644 -0.8300 39 1 3.1319 9.8848 -0.1615 40 1 4.5861 11.4590 -2.1853 41 1 2.8305 11.1661 -2.2045 42 1 3.2898 13.8188 -2.0755 43 1 2.7497 17.0946 -2.4189 44 1 4.8183 7.7225 0.0632 45 1 5.9225 7.6604 -1.3784 46 1 2.1664 1.8351 -2.1244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566860146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:51 Heat of formation + Delta-G solvation = 9.663372 kcal Electronic energy + Delta-G solvation = -27033.909073 eV Core-core repulsion = 22960.167126 eV Total energy + Delta-G solvation = -4073.741948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.59592 -40.02736 -38.55639 -37.84400 -35.55117 -34.49236 -33.77411 -32.38574 -31.14601 -30.85753 -29.99650 -26.83698 -25.66553 -25.10759 -24.23968 -23.63232 -22.11546 -21.31639 -20.42382 -19.91640 -19.09204 -18.19022 -17.81752 -16.63186 -16.54952 -16.04356 -15.80799 -15.40738 -15.19167 -15.00196 -14.54920 -14.48398 -14.37022 -14.22833 -14.14921 -13.87826 -13.31319 -13.18446 -13.10874 -12.84447 -12.71586 -12.43958 -12.09662 -12.04552 -11.58393 -11.50820 -11.16587 -11.02529 -10.87778 -10.72933 -10.66449 -10.36096 -10.24272 -10.17837 -10.09705 -9.46777 -9.16769 -8.90443 -8.38756 -7.95445 -7.89255 -6.37584 -3.78274 1.25767 2.06052 2.13006 3.15934 3.21193 3.29418 3.35479 3.35810 3.93020 3.96228 4.05170 4.16886 4.21352 4.28191 4.39658 4.47990 4.57544 4.68574 4.78612 4.87671 4.90651 4.92949 4.98385 5.11732 5.24681 5.32618 5.34556 5.54106 5.61216 5.75441 5.77292 5.87014 5.93727 6.02477 6.03196 6.09166 6.12220 6.33941 6.51057 6.58813 7.28468 7.33970 7.59199 7.59299 7.73851 8.10951 8.16065 8.65992 9.22217 9.59158 10.10825 10.80212 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027499 B = 0.001532 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.990301 B =18268.546951 C =18686.358503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.458 5.458 4 C 0.186 3.814 5 N -0.462 5.462 6 C -0.064 4.064 7 C 0.604 3.396 8 O -0.550 6.550 9 N -0.702 5.702 10 C 0.122 3.878 11 H 0.115 0.885 12 C -0.181 4.181 13 C 0.071 3.929 14 H 0.100 0.900 15 N -0.655 5.655 16 C 0.049 3.951 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.132 4.132 29 C 0.034 3.966 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.211 0.789 36 H 0.410 0.590 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.352 0.648 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.678 -34.492 0.519 34.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.140 5.140 4 C -0.098 4.098 5 N -0.181 5.181 6 C -0.193 4.193 7 C 0.390 3.610 8 O -0.427 6.427 9 N -0.351 5.351 10 C 0.016 3.984 11 H 0.133 0.867 12 C -0.222 4.222 13 C -0.040 4.040 14 H 0.118 0.882 15 N -0.286 5.286 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.171 4.171 29 C -0.105 4.105 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.227 0.773 36 H 0.246 0.754 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.172 0.828 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.851 -33.811 0.982 33.876 hybrid contribution -1.352 0.042 -0.420 1.416 sum -3.203 -33.769 0.562 33.925 Atomic orbital electron populations 1.22189 0.93656 1.03545 1.03614 1.21983 0.95973 0.79230 1.05197 1.45564 1.48438 1.13148 1.06839 1.25186 1.03491 0.87411 0.93664 1.70623 1.17865 1.19269 1.10342 1.20609 1.12425 0.95657 0.90581 1.16938 0.76342 0.81344 0.86339 1.90788 1.55341 1.83146 1.13466 1.45773 1.66114 1.12411 1.10829 1.22435 0.96226 0.83465 0.96238 0.86711 1.24242 0.98144 0.96790 1.02983 1.22813 0.95526 0.89207 0.96502 0.88242 1.60008 1.49630 1.00410 1.18546 1.21722 1.00790 0.90321 0.95485 1.19851 0.84248 0.84039 0.89224 1.90519 1.56171 1.84382 1.15731 1.41866 1.62800 1.05862 1.09585 1.19711 1.45748 0.85586 0.91836 0.87938 1.25256 0.97439 0.98864 0.96394 1.69617 1.50051 1.23479 1.11215 0.85858 0.78270 0.80277 0.79871 1.20405 1.20974 1.19454 1.23469 0.98575 0.93631 1.01447 1.22592 1.02787 0.91822 0.93281 0.91527 0.91596 0.90206 0.88622 0.88311 0.77264 0.75447 0.91078 0.89416 0.82788 0.89555 0.93759 0.77450 0.91917 0.88930 0.90617 0.79624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.29 10.24 37.16 0.38 0.09 16 2 C 0.10 0.17 6.84 -4.04 -0.03 0.14 16 3 N -0.46 -2.58 2.73 -118.36 -0.32 -2.90 16 4 C 0.19 1.25 12.55 -89.91 -1.13 0.12 16 5 N -0.46 -4.76 11.01 -11.03 -0.12 -4.88 16 6 C -0.06 -0.71 6.98 -83.09 -0.58 -1.29 16 7 C 0.60 7.84 7.81 -12.57 -0.10 7.75 16 8 O -0.55 -8.50 16.48 5.25 0.09 -8.41 16 9 N -0.70 -8.13 5.35 -54.12 -0.29 -8.42 16 10 C 0.12 1.39 4.24 -67.12 -0.28 1.11 16 11 H 0.12 1.38 7.46 -51.93 -0.39 0.99 16 12 C -0.18 -2.15 7.49 -25.92 -0.19 -2.35 16 13 C 0.07 0.91 4.18 -66.90 -0.28 0.63 16 14 H 0.10 1.18 7.87 -51.93 -0.41 0.77 16 15 N -0.65 -10.79 6.24 -107.14 -0.67 -11.46 16 16 C 0.05 0.89 6.01 -4.98 -0.03 0.86 16 17 C 0.44 10.64 7.82 -10.99 -0.09 10.56 16 18 O -0.58 -16.18 15.78 5.55 0.09 -16.09 16 19 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 20 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 24 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 C -0.13 -1.50 7.63 -25.91 -0.20 -1.70 16 29 C 0.03 0.28 11.26 -16.64 -0.19 0.10 16 30 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.10 0.07 8.14 -51.93 -0.42 -0.36 16 34 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 35 H 0.21 0.60 8.06 -52.48 -0.42 0.17 16 36 H 0.41 4.42 8.44 -40.82 -0.34 4.08 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.08 7.82 -51.93 -0.41 0.67 16 39 H 0.35 6.02 7.90 -39.29 -0.31 5.71 16 40 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.09 1.09 8.12 -51.93 -0.42 0.67 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -36.07 395.39 -9.34 -45.42 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -6.76 Total: 15.41 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -2.95 Total: 7.87 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -0.74 Total: -66.49 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.17 Total: -24.51 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.07 -9.34 -45.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566860146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.079 kcal (2) G-P(sol) polarization free energy of solvation -36.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds