Wall clock time and date at job start Tue Mar 31 2020 19:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47425 * 2 1 4 4 C 1.35848 * 126.13198 * 89.97353 * 3 2 1 5 5 N 1.30170 * 109.00578 * 180.02562 * 4 3 2 6 6 C 1.35765 * 108.86456 * 0.02562 * 5 4 3 7 7 C 1.47321 * 126.23547 * 179.97438 * 6 5 4 8 8 O 1.21626 * 119.99767 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99870 * 0.02712 * 7 6 5 10 10 C 1.46502 * 119.99671 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.90669 * 336.24268 * 10 9 7 12 12 C 1.53778 * 113.61780 * 107.50275 * 10 9 7 13 13 C 1.53778 * 87.08449 * 139.97851 * 12 10 9 14 14 H 1.09000 * 113.61263 * 89.11673 * 13 12 10 15 15 N 1.46895 * 113.61384 * 220.01595 * 13 12 10 16 16 C 1.46894 * 111.00604 * 252.49629 * 15 13 12 17 17 C 1.50701 * 109.47623 * 180.02562 * 16 15 13 18 18 O 1.21290 * 119.99812 * 359.97438 * 17 16 15 19 19 N 1.34772 * 119.99781 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99664 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00263 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00086 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99912 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00135 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47180 * 90.00124 * 24 22 20 26 26 H 1.48509 * 109.47235 * 210.00197 * 24 22 20 27 27 H 1.48501 * 109.47102 * 329.99597 * 24 22 20 28 28 C 1.53784 * 87.08081 * 334.56700 * 13 12 10 29 29 C 1.35376 * 126.14040 * 270.32992 * 3 2 1 30 30 H 1.08996 * 109.46719 * 300.00033 * 1 2 3 31 31 H 1.09003 * 109.46706 * 59.99986 * 1 2 3 32 32 H 1.08993 * 109.47245 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47335 * 240.00348 * 2 1 3 34 34 H 1.09007 * 109.47236 * 120.00508 * 2 1 3 35 35 H 1.08006 * 125.49939 * 0.07500 * 4 3 2 36 36 H 0.97000 * 120.00419 * 359.97438 * 9 7 6 37 37 H 1.08999 * 113.61111 * 254.52914 * 12 10 9 38 38 H 1.09004 * 113.61682 * 25.42310 * 12 10 9 39 39 H 1.00901 * 111.00236 * 16.45388 * 15 13 12 40 40 H 1.09001 * 109.46755 * 300.00607 * 16 15 13 41 41 H 1.08999 * 109.46705 * 59.99931 * 16 15 13 42 42 H 0.97001 * 120.00513 * 0.02562 * 19 17 16 43 43 H 0.97001 * 119.99926 * 179.97438 * 23 22 20 44 44 H 1.09004 * 113.61451 * 270.88641 * 28 13 12 45 45 H 1.08994 * 113.61477 * 139.97943 * 28 13 12 46 46 H 1.08002 * 126.56427 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2850 2.1365 1.0972 5 7 2.6993 3.3095 0.7139 6 6 2.7128 3.3484 -0.6432 7 6 3.1166 4.4934 -1.4775 8 8 3.0842 4.4037 -2.6900 9 7 3.5220 5.6403 -0.8972 10 6 3.9230 6.7792 -1.7270 11 1 4.2467 6.4838 -2.7250 12 6 2.9048 7.9315 -1.7254 13 6 4.1069 8.8893 -1.6771 14 1 4.4806 9.1708 -2.6615 15 7 3.9046 10.0432 -0.7908 16 6 3.7077 11.2749 -1.5667 17 6 3.5045 12.4344 -0.6257 18 8 3.5216 12.2525 0.5733 19 7 3.3039 13.6734 -1.1166 20 6 3.1185 14.7281 -0.2605 21 1 3.1337 14.5662 0.8072 22 6 2.9122 16.0056 -0.7665 23 7 2.8942 16.2028 -2.0657 24 14 2.6604 17.4428 0.3999 25 1 3.9746 18.0529 0.7245 26 1 1.7894 18.4577 -0.2459 27 1 2.0166 16.9604 1.6481 28 6 4.8950 7.7415 -1.0240 29 6 2.2786 2.1360 -1.0932 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.1721 1.8154 2.1222 36 1 3.5475 5.7120 0.0698 37 1 2.3257 8.0037 -2.6460 38 1 2.2839 7.9644 -0.8300 39 1 3.1319 9.8848 -0.1615 40 1 4.5861 11.4590 -2.1853 41 1 2.8305 11.1661 -2.2045 42 1 3.2898 13.8188 -2.0755 43 1 2.7497 17.0946 -2.4189 44 1 4.8183 7.7225 0.0632 45 1 5.9225 7.6604 -1.3784 46 1 2.1664 1.8351 -2.1244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566860146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:50 Heat of formation + Delta-G solvation = -17.177030 kcal Electronic energy + Delta-G solvation = -27035.072961 eV Core-core repulsion = 22960.167126 eV Total energy + Delta-G solvation = -4074.905835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.16021 -41.03141 -40.11064 -39.22520 -36.11539 -35.94731 -35.38667 -33.58532 -33.17168 -31.27508 -30.60980 -28.43561 -26.63086 -26.32495 -25.35383 -24.33239 -23.04310 -21.81662 -21.44791 -21.10777 -20.61047 -19.87579 -18.78241 -17.89025 -17.35102 -17.12932 -16.88812 -16.59951 -16.34775 -16.15056 -15.79220 -15.61616 -15.51726 -15.05688 -14.91494 -14.79634 -14.63628 -14.32791 -14.27771 -13.58559 -13.51579 -13.42712 -13.38174 -13.11358 -12.97950 -12.82366 -12.41515 -12.22102 -12.18239 -12.12605 -11.92157 -11.76138 -11.49854 -11.35515 -11.02069 -10.76455 -10.32530 -10.08519 -10.00674 -9.60690 -9.22473 -8.45808 -5.94717 0.55594 1.38869 1.42333 1.43731 1.55265 1.70346 2.06275 2.27771 2.33284 2.51730 2.98890 3.21460 3.42256 3.45674 3.65198 3.73474 3.79539 3.89955 3.93211 4.01245 4.10171 4.17358 4.34635 4.41651 4.42675 4.50237 4.55447 4.65144 4.71302 4.79282 4.80879 4.84261 5.00913 5.08898 5.12250 5.13541 5.23239 5.41693 5.43750 5.57605 5.93884 6.11411 6.16389 6.40756 6.50833 6.61159 6.86761 7.13336 7.23365 7.57148 8.12523 8.71568 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027499 B = 0.001532 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.990301 B =18268.546951 C =18686.358503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.449 5.449 4 C 0.195 3.805 5 N -0.498 5.498 6 C -0.102 4.102 7 C 0.599 3.401 8 O -0.584 6.584 9 N -0.697 5.697 10 C 0.127 3.873 11 H 0.112 0.888 12 C -0.175 4.175 13 C 0.071 3.929 14 H 0.115 0.885 15 N -0.667 5.667 16 C 0.064 3.936 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.273 1.273 28 C -0.123 4.123 29 C 0.041 3.959 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.248 0.752 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.345 0.655 40 H 0.106 0.894 41 H 0.066 0.934 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.839 -36.122 0.701 36.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.027 4.027 3 N -0.130 5.130 4 C -0.090 4.090 5 N -0.217 5.217 6 C -0.230 4.230 7 C 0.387 3.613 8 O -0.465 6.465 9 N -0.346 5.346 10 C 0.021 3.979 11 H 0.129 0.871 12 C -0.216 4.216 13 C -0.040 4.040 14 H 0.132 0.868 15 N -0.298 5.298 16 C -0.069 4.069 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.162 4.162 29 C -0.100 4.100 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.144 0.856 35 H 0.264 0.736 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.165 0.835 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.009 -35.469 1.151 35.545 hybrid contribution -1.333 0.411 -0.440 1.462 sum -3.342 -35.058 0.711 35.225 Atomic orbital electron populations 1.22171 0.93620 1.04436 1.02461 1.22343 0.95884 0.77157 1.07285 1.45816 1.47209 1.14246 1.05707 1.25921 1.01347 0.86483 0.95215 1.70550 1.19711 1.21468 1.10014 1.20512 1.15171 0.96132 0.91194 1.17295 0.75776 0.82017 0.86219 1.90748 1.57069 1.83846 1.14804 1.45751 1.65684 1.12228 1.10967 1.22335 0.96035 0.83366 0.96119 0.87060 1.24166 0.97941 0.96664 1.02782 1.22934 0.96267 0.88100 0.96687 0.86756 1.60034 1.49486 1.00971 1.19297 1.21601 1.02576 0.88454 0.94227 1.20920 0.82139 0.84855 0.89643 1.90486 1.57467 1.85138 1.17977 1.41934 1.63389 1.06207 1.09495 1.19686 1.48237 0.87277 0.91337 0.90337 1.26043 0.96377 1.00729 0.98071 1.69677 1.49671 1.24436 1.12317 0.84920 0.78520 0.77105 0.77729 1.19619 1.19496 1.19798 1.23392 0.99035 0.92621 1.01124 1.22781 1.01476 0.91331 0.94457 0.92127 0.93270 0.88296 0.87281 0.85574 0.73625 0.75051 0.90969 0.89939 0.83493 0.87559 0.91598 0.76950 0.91301 0.89340 0.89473 0.78583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.22 10.24 71.98 0.74 0.51 16 2 C 0.09 0.06 6.84 86.38 0.59 0.65 16 3 N -0.45 -4.22 2.73 -528.38 -1.44 -5.66 16 4 C 0.19 2.26 12.55 180.10 2.26 4.52 16 5 N -0.50 -10.05 11.01 -188.81 -2.08 -12.13 16 6 C -0.10 -2.29 6.98 40.50 0.28 -2.00 16 7 C 0.60 15.97 7.81 86.63 0.68 16.64 16 8 O -0.58 -18.56 16.48 -4.11 -0.07 -18.63 16 9 N -0.70 -16.42 5.35 -443.38 -2.37 -18.80 16 10 C 0.13 2.86 4.24 45.52 0.19 3.06 16 11 H 0.11 2.65 7.46 -2.39 -0.02 2.63 16 12 C -0.17 -4.07 7.49 31.12 0.23 -3.84 16 13 C 0.07 1.71 4.18 45.44 0.19 1.90 16 14 H 0.11 2.46 7.87 -2.39 -0.02 2.44 16 15 N -0.67 -21.52 6.24 -492.88 -3.08 -24.60 16 16 C 0.06 2.24 6.01 85.56 0.51 2.75 16 17 C 0.44 21.30 7.82 87.66 0.69 21.99 16 18 O -0.62 -35.41 15.78 -3.06 -0.05 -35.46 16 19 N -0.57 -30.05 5.29 -306.99 -1.62 -31.67 16 20 C -0.34 -19.46 9.68 84.04 0.81 -18.64 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 24 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 28 C -0.12 -2.68 7.63 31.12 0.24 -2.44 16 29 C 0.04 0.65 11.26 83.72 0.94 1.60 16 30 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.13 -0.54 8.14 -2.38 -0.02 -0.56 16 35 H 0.25 0.64 8.06 -2.91 -0.02 0.61 16 36 H 0.41 9.11 8.44 -92.71 -0.78 8.33 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 2.02 7.82 -2.38 -0.02 2.00 16 39 H 0.35 11.84 7.90 -89.69 -0.71 11.13 16 40 H 0.11 3.34 8.13 -2.39 -0.02 3.32 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 43 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.09 2.03 8.12 -2.39 -0.02 2.01 16 45 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.20 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -79.75 395.39 -0.76 -80.51 By element: Atomic # 1 Polarization: 45.58 SS G_CDS: -1.19 Total: 44.39 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: 8.82 Total: 26.49 kcal Atomic # 7 Polarization: -132.60 SS G_CDS: -10.31 Total: -142.91 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -0.12 Total: -54.09 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -79.75 -0.76 -80.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566860146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.338 kcal (2) G-P(sol) polarization free energy of solvation -79.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds